Wall clock time and date at job start Tue Mar 31 2020 16:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47174 * 2 1 4 4 C 1.38541 * 120.01543 * 125.28095 * 3 2 1 5 5 C 1.40090 * 117.81735 * 180.21814 * 4 3 2 6 6 C 1.48098 * 121.14768 * 179.78712 * 5 4 3 7 7 O 1.21530 * 119.99480 * 182.74505 * 6 5 4 8 8 N 1.34774 * 119.99865 * 2.74227 * 6 5 4 9 9 C 1.39842 * 119.99457 * 174.19577 * 8 6 5 10 10 C 1.38987 * 120.03343 * 147.79202 * 9 8 6 11 11 C 1.38152 * 120.05985 * 179.97438 * 10 9 8 12 12 C 1.38173 * 120.14487 * 359.72300 * 11 10 9 13 13 C 1.38912 * 120.07188 * 0.55185 * 12 11 10 14 14 O 1.35753 * 120.03351 * 179.71956 * 13 12 11 15 15 C 1.34835 * 116.99623 * 353.90063 * 14 13 12 16 16 H 1.08000 * 119.99942 * 5.08438 * 15 14 13 17 17 C 1.38647 * 119.99560 * 185.08363 * 15 14 13 18 18 N 1.31555 * 120.00421 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99900 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46926 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47444 * 119.99774 * 19 17 15 22 22 H 1.48504 * 109.47089 * 240.00162 * 19 17 15 23 23 C 1.38738 * 120.04184 * 327.76598 * 9 8 6 24 24 C 1.39788 * 117.70230 * 359.51708 * 5 4 3 25 25 C 1.50697 * 120.17342 * 180.27051 * 24 5 4 26 26 N 1.31893 * 119.65113 * 0.24780 * 24 5 4 27 27 N 1.28277 * 122.33480 * 359.97438 * 26 24 5 28 28 H 1.08997 * 109.46947 * 299.99582 * 1 2 3 29 29 H 1.08994 * 109.47185 * 59.99989 * 1 2 3 30 30 H 1.09004 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.46959 * 240.00141 * 2 1 3 32 32 H 1.08995 * 109.47664 * 120.00241 * 2 1 3 33 33 H 1.07999 * 121.08841 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00460 * 354.20433 * 8 6 5 35 35 H 1.07994 * 119.96829 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.92620 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.96261 * 180.27480 * 12 11 10 38 38 H 0.97004 * 120.00335 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.06449 * 0.04680 * 23 9 8 40 40 H 1.09000 * 109.47117 * 82.45207 * 25 24 5 41 41 H 1.08996 * 109.47192 * 202.44847 * 25 24 5 42 42 H 1.09001 * 109.47206 * 322.45182 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9166 1.8432 0.9793 5 6 3.3503 3.1746 0.9381 6 6 4.2915 3.7053 1.9510 7 8 4.6153 4.8764 1.9249 8 7 4.7889 2.8896 2.9015 9 6 5.7686 3.3583 3.7824 10 6 5.8207 2.8767 5.0851 11 6 6.7887 3.3391 5.9556 12 6 7.7113 4.2768 5.5329 13 6 7.6611 4.7662 4.2339 14 8 8.5644 5.6917 3.8211 15 6 9.4029 6.1870 4.7536 16 1 9.3924 5.7865 5.7566 17 6 10.2786 7.2104 4.4249 18 7 10.2917 7.6980 3.2031 19 14 11.4398 7.8972 5.7170 20 1 11.2285 7.1833 7.0019 21 1 12.8437 7.7093 5.2709 22 1 11.1699 9.3452 5.9055 23 6 6.6901 4.3041 3.3568 24 6 2.8686 3.9834 -0.0953 25 6 3.3037 5.4227 -0.1962 26 7 2.0317 3.4801 -0.9817 27 7 1.6350 2.2610 -0.9358 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.2572 1.1693 1.7514 34 1 4.4674 1.9774 2.9746 35 1 5.1038 2.1405 5.4172 36 1 6.8269 2.9637 6.9676 37 1 8.4695 4.6329 6.2146 38 1 10.9041 8.4143 2.9732 39 1 6.6515 4.6801 2.3451 40 1 4.2714 5.4756 -0.6951 41 1 2.5677 5.9853 -0.7705 42 1 3.3867 5.8482 0.8039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758950382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:10 Heat of formation + Delta-G solvation = 0.429119 kcal Electronic energy + Delta-G solvation = -26430.628607 eV Core-core repulsion = 22569.272489 eV Total energy + Delta-G solvation = -3861.356117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67227 -41.42623 -40.31858 -38.32370 -36.39435 -35.74031 -34.74321 -34.25916 -32.60483 -31.20239 -30.17804 -28.87617 -27.41674 -26.99306 -24.56379 -24.41288 -23.46555 -22.84447 -21.66542 -20.12825 -19.32662 -18.73036 -18.55267 -17.05184 -16.99686 -16.84993 -16.74267 -16.54559 -16.09635 -15.86221 -15.71128 -15.47990 -15.20349 -14.97544 -14.48567 -14.40773 -14.22496 -13.97158 -13.63024 -13.44843 -13.27319 -13.18208 -12.89695 -12.73925 -12.72929 -12.37399 -12.15378 -12.08760 -11.86154 -11.56942 -11.46029 -11.39499 -11.15871 -10.78619 -10.66513 -10.53512 -9.36770 -8.90183 -8.46773 -6.16137 -0.92102 -0.31395 0.41676 0.69782 1.34898 1.43136 1.53816 1.55337 1.65507 2.17969 2.35985 2.76643 2.82731 2.99192 3.16979 3.17443 3.34890 3.55430 3.65626 3.94717 4.05015 4.12985 4.34866 4.37021 4.39273 4.39458 4.53288 4.55899 4.60034 4.65603 4.72672 4.87081 4.95642 5.04226 5.08611 5.11147 5.18874 5.24203 5.35155 5.39382 5.44813 5.63177 5.73578 6.02773 6.15787 6.24109 6.90214 6.97406 7.49461 7.79369 8.77022 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002586 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.981359 B =10824.984184 C =11902.105443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C 0.061 3.939 4 C -0.054 4.054 5 C -0.139 4.139 6 C 0.556 3.444 7 O -0.528 6.528 8 N -0.640 5.640 9 C 0.184 3.816 10 C -0.199 4.199 11 C -0.048 4.048 12 C -0.253 4.253 13 C 0.127 3.873 14 O -0.235 6.235 15 C -0.411 4.411 16 H 0.107 0.893 17 C -0.028 4.028 18 N -0.924 5.924 19 Si 1.022 2.978 20 H -0.246 1.246 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.211 4.211 24 C 0.108 3.892 25 C -0.109 4.109 26 N -0.266 5.266 27 N -0.243 5.243 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.204 0.796 34 H 0.431 0.569 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.123 0.877 38 H 0.272 0.728 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.186 -19.431 0.992 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.085 4.085 4 C -0.084 4.084 5 C -0.153 4.153 6 C 0.344 3.656 7 O -0.404 6.404 8 N -0.287 5.287 9 C 0.090 3.910 10 C -0.219 4.219 11 C -0.066 4.066 12 C -0.273 4.273 13 C 0.076 3.924 14 O -0.141 6.141 15 C -0.487 4.487 16 H 0.125 0.875 17 C -0.225 4.225 18 N -0.562 5.562 19 Si 0.841 3.159 20 H -0.169 1.169 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.233 4.233 24 C -0.037 4.037 25 C -0.167 4.167 26 N -0.108 5.108 27 N -0.085 5.085 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.140 0.860 33 H 0.220 0.780 34 H 0.272 0.728 35 H 0.186 0.814 36 H 0.178 0.822 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.770 -18.110 -0.791 25.384 hybrid contribution 1.544 0.541 1.074 1.957 sum -16.226 -17.568 0.283 23.917 Atomic orbital electron populations 1.21715 0.93750 1.03248 1.01796 1.20688 0.97178 0.86447 1.06160 1.23508 0.93908 0.99942 0.91104 1.23056 0.92789 0.93667 0.98838 1.20856 1.00550 0.96485 0.97457 1.18300 0.80536 0.85612 0.81183 1.90861 1.58905 1.17602 1.73068 1.42994 1.38298 1.16480 1.30936 1.17207 0.87906 0.95693 0.90229 1.20897 1.03721 1.06967 0.90327 1.21055 0.91961 0.93324 1.00272 1.21360 1.05205 1.04809 0.95878 1.19646 0.89181 0.89742 0.93848 1.83957 1.41766 1.50234 1.38169 1.21933 1.15283 1.18416 0.93075 0.87533 1.26683 0.99839 0.95903 1.00030 1.70222 1.38185 1.26941 1.20870 0.84485 0.76469 0.78104 0.76847 1.16912 1.19365 1.19639 1.20056 0.97632 1.05640 0.99935 1.23191 0.91617 0.98950 0.89898 1.20970 1.01940 0.88545 1.05251 1.73085 1.09877 1.06389 1.21429 1.72678 1.17849 0.97503 1.20443 0.93016 0.93430 0.89708 0.88394 0.86011 0.77956 0.72768 0.81375 0.82154 0.85964 0.91933 0.88156 0.90132 0.89409 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.78 71.98 0.70 -0.59 16 2 C -0.07 -0.50 6.35 29.85 0.19 -0.31 16 3 C 0.06 0.96 6.25 42.62 0.27 1.23 16 4 C -0.05 -0.75 9.30 22.79 0.21 -0.54 16 5 C -0.14 -3.21 5.92 -19.84 -0.12 -3.33 16 6 C 0.56 15.85 7.51 86.86 0.65 16.50 16 7 O -0.53 -20.47 11.06 -3.81 -0.04 -20.51 16 8 N -0.64 -14.83 5.30 -305.93 -1.62 -16.45 16 9 C 0.18 5.92 6.29 38.16 0.24 6.16 16 10 C -0.20 -5.16 9.96 22.43 0.22 -4.94 16 11 C -0.05 -1.42 10.03 22.23 0.22 -1.20 16 12 C -0.25 -10.53 9.16 22.42 0.21 -10.32 16 13 C 0.13 6.44 6.64 22.56 0.15 6.59 16 14 O -0.23 -14.59 9.76 -22.83 -0.22 -14.81 16 15 C -0.41 -24.22 9.49 67.92 0.64 -23.58 16 16 H 0.11 5.65 5.20 -2.91 -0.02 5.64 16 17 C -0.03 -1.60 5.49 84.83 0.47 -1.13 16 18 N -0.92 -58.39 13.67 21.61 0.30 -58.09 16 19 Si 1.02 43.28 29.55 68.60 2.03 45.31 16 20 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 C -0.21 -9.53 8.60 22.52 0.19 -9.33 16 24 C 0.11 2.95 6.91 42.92 0.30 3.24 16 25 C -0.11 -3.06 9.07 71.24 0.65 -2.41 16 26 N -0.27 -7.42 11.42 -46.93 -0.54 -7.96 16 27 N -0.24 -5.79 11.04 -47.69 -0.53 -6.32 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.62 7.96 -2.39 -0.02 0.60 16 30 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.12 0.06 7.92 -2.39 -0.02 0.04 16 33 H 0.20 0.63 6.56 -2.91 -0.02 0.61 16 34 H 0.43 5.03 7.01 -92.71 -0.65 4.38 16 35 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 36 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16 38 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.10 5.07 6.34 -2.91 -0.02 5.05 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.09 2.99 5.76 -2.39 -0.01 2.98 16 Total: -1.00 -85.92 357.41 5.00 -80.91 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.44 Total: 21.88 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 5.19 Total: -23.96 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -2.39 Total: -88.82 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.26 Total: -35.32 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -85.92 5.00 -80.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758950382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.343 kcal (2) G-P(sol) polarization free energy of solvation -85.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds