Wall clock time and date at job start Tue Mar 31 2020 14:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38616 * 120.45189 * 2 1 4 4 C 1.38582 * 118.40293 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.44631 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.46890 * 95.00540 * 5 4 3 7 7 C 1.34772 * 120.00100 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00307 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99958 * 180.02562 * 7 6 5 10 10 C 1.50702 * 109.46777 * 180.02562 * 9 7 6 11 11 C 1.38319 * 119.96747 * 269.72164 * 10 9 7 12 12 C 1.38280 * 120.14179 * 179.76848 * 11 10 9 13 13 C 1.38124 * 120.06439 * 0.51546 * 12 11 10 14 14 C 1.38859 * 119.93466 * 359.73936 * 13 12 11 15 15 O 1.35749 * 120.07036 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99829 * 354.48882 * 15 14 13 17 17 H 1.07997 * 120.00450 * 5.05492 * 16 15 14 18 18 C 1.38655 * 119.99461 * 185.06135 * 16 15 14 19 19 N 1.31556 * 119.99866 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00346 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46992 * 90.00251 * 20 18 16 22 22 H 1.48498 * 109.47364 * 210.00545 * 20 18 16 23 23 H 1.48496 * 109.47105 * 330.00375 * 20 18 16 24 24 C 1.38078 * 119.96430 * 90.00456 * 10 9 7 25 25 N 1.32342 * 119.10086 * 0.02562 * 4 3 2 26 26 C 1.31780 * 120.82505 * 359.97438 * 25 4 3 27 27 N 1.31808 * 121.75315 * 0.02562 * 26 25 4 28 28 H 1.09000 * 109.46951 * 89.99643 * 1 2 3 29 29 H 1.08999 * 109.47397 * 210.00076 * 1 2 3 30 30 H 1.09001 * 109.46931 * 329.99930 * 1 2 3 31 31 H 1.08004 * 120.79932 * 0.25322 * 3 2 1 32 32 H 1.09006 * 109.47370 * 215.00275 * 5 4 3 33 33 H 1.09002 * 109.47748 * 335.00689 * 5 4 3 34 34 H 0.97002 * 120.00230 * 359.97438 * 6 5 4 35 35 H 1.08999 * 109.47249 * 299.99730 * 9 7 6 36 36 H 1.09000 * 109.47314 * 60.00599 * 9 7 6 37 37 H 1.08007 * 119.93044 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.96973 * 180.25584 * 12 11 10 39 39 H 1.08007 * 120.03320 * 179.77086 * 13 12 11 40 40 H 0.97001 * 120.00475 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.03882 * 359.94781 * 24 10 9 42 42 H 1.08000 * 119.12809 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1949 0.0000 4 6 3.5945 1.1454 0.0005 5 6 4.4040 2.4164 0.0012 6 7 4.7675 2.7632 1.3774 7 6 5.4978 3.8689 1.6233 8 8 5.8545 4.5766 0.7053 9 6 5.8721 4.2253 3.0389 10 6 6.6816 5.4964 3.0395 11 6 8.0600 5.4378 2.9408 12 6 8.8060 6.6021 2.9362 13 6 8.1770 7.8273 3.0410 14 6 6.7937 7.8894 3.1456 15 8 6.1727 9.0921 3.2492 16 6 6.9609 10.1804 3.3597 17 1 8.0334 10.0807 3.2809 18 6 6.3944 11.4276 3.5745 19 7 7.1633 12.4896 3.6818 20 14 4.5393 11.6001 3.7102 21 1 4.1303 11.4451 5.1292 22 1 4.1297 12.9408 3.2205 23 1 3.8833 10.5514 2.8885 24 6 6.0469 6.7182 3.1445 25 7 4.1963 -0.0332 0.0005 26 6 3.4956 -1.1493 0.0005 27 7 2.1776 -1.1408 0.0000 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6901 2.1419 0.0041 32 1 5.3095 2.2708 -0.5880 33 1 3.8139 3.2234 -0.4331 34 1 4.4825 2.1970 2.1116 35 1 4.9669 4.3712 3.6283 36 1 6.4622 3.4181 3.4729 37 1 8.5545 4.4807 2.8630 38 1 9.8818 6.5532 2.8549 39 1 8.7604 8.7362 3.0411 40 1 6.7671 13.3622 3.8317 41 1 4.9709 6.7633 3.2254 42 1 4.0151 -2.0962 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760404206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:38 Heat of formation + Delta-G solvation = 8.616198 kcal Electronic energy + Delta-G solvation = -25536.683129 eV Core-core repulsion = 21675.682029 eV Total energy + Delta-G solvation = -3861.001099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.62634 -39.88835 -38.91038 -36.71220 -35.79425 -34.48046 -32.98813 -32.39394 -32.05567 -29.56210 -29.30262 -27.98455 -26.32440 -25.10830 -24.58037 -22.22782 -21.75854 -21.17051 -20.21211 -18.18473 -17.75092 -17.55571 -17.03731 -16.59895 -16.01220 -15.96631 -15.58194 -15.30856 -15.13503 -14.68178 -14.06222 -13.94168 -13.76170 -13.63923 -13.58410 -13.43992 -13.25371 -13.11488 -12.78313 -12.54181 -12.37053 -12.14993 -11.66065 -11.37188 -11.28347 -11.02149 -10.82085 -10.77839 -10.69316 -10.14485 -10.13225 -9.83934 -9.72612 -9.35426 -9.31677 -8.83726 -8.11589 -7.32071 -6.37429 -4.04028 0.34150 0.46299 2.03788 2.32468 2.65875 2.94437 3.24188 3.27177 3.35037 3.42915 3.52215 3.52773 3.82145 4.26982 4.42152 4.46092 4.50059 4.73515 4.75916 4.90391 4.92383 4.97341 5.08267 5.12025 5.20050 5.29923 5.32087 5.38077 5.42783 5.58085 5.71312 5.87715 5.87979 6.12122 6.15513 6.28751 6.51107 6.56171 6.82336 7.13304 7.24662 7.27750 7.35858 7.58356 7.64492 7.84952 8.08366 8.17622 8.98080 9.61303 10.70430 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.002185 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.728222 B =12809.749197 C =14039.141222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.176 3.824 3 C -0.209 4.209 4 C 0.162 3.838 5 C 0.170 3.830 6 N -0.733 5.733 7 C 0.517 3.483 8 O -0.514 6.514 9 C -0.092 4.092 10 C -0.036 4.036 11 C -0.187 4.187 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.160 3.840 15 O -0.219 6.219 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.174 4.174 25 N -0.511 5.511 26 C 0.300 3.700 27 N -0.521 5.521 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.400 0.600 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.279 0.721 41 H 0.114 0.886 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.109 -26.523 -4.538 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.030 3.970 3 C -0.232 4.232 4 C 0.016 3.984 5 C 0.046 3.954 6 N -0.388 5.388 7 C 0.303 3.697 8 O -0.388 6.388 9 C -0.132 4.132 10 C -0.037 4.037 11 C -0.206 4.206 12 C -0.094 4.094 13 C -0.236 4.236 14 C 0.108 3.892 15 O -0.125 6.125 16 C -0.463 4.463 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.194 4.194 25 N -0.226 5.226 26 C 0.012 3.988 27 N -0.236 5.236 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.169 0.831 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.132 0.868 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.589 -26.517 -5.199 29.023 hybrid contribution -1.092 0.661 0.320 1.315 sum -11.680 -25.857 -4.879 28.789 Atomic orbital electron populations 1.20828 0.87509 1.04360 1.03945 1.21826 0.97856 0.88064 0.89247 1.22733 0.95510 1.01013 1.03938 1.21693 0.91473 0.93885 0.91340 1.20102 0.99171 0.90621 0.85481 1.45908 1.57156 1.27847 1.07843 1.20794 0.77220 0.79649 0.92001 1.90781 1.52087 1.49680 1.46222 1.20576 1.01513 0.97695 0.93385 1.18637 0.93209 0.91849 0.99963 1.20432 0.92968 0.97503 1.09736 1.20743 0.98709 0.92142 0.97824 1.21303 0.94565 0.98595 1.09144 1.19011 0.91016 0.85871 0.93295 1.83565 1.36104 1.12089 1.80720 1.20762 0.92025 0.83098 1.50458 0.87655 1.24459 1.00111 0.93770 0.95738 1.69647 1.35890 0.99019 1.47410 0.86183 0.83863 0.77726 0.79142 1.19946 1.20836 1.18384 1.19935 0.98895 0.89811 1.10739 1.68286 1.42023 0.98668 1.13582 1.25037 0.86631 0.96856 0.90276 1.68299 1.10492 1.30484 1.14302 0.89433 0.89736 0.89825 0.83097 0.89109 0.89225 0.76655 0.88174 0.88150 0.87677 0.87147 0.84982 0.91132 0.86834 0.78441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.22 36.01 0.37 -0.07 16 2 C 0.18 1.23 6.82 -82.24 -0.56 0.67 16 3 C -0.21 -1.43 9.52 -39.32 -0.37 -1.80 16 4 C 0.16 1.35 6.19 -82.25 -0.51 0.84 16 5 C 0.17 1.57 6.03 -5.19 -0.03 1.54 16 6 N -0.73 -6.97 5.55 -61.47 -0.34 -7.31 16 7 C 0.52 6.86 7.82 -10.99 -0.09 6.77 16 8 O -0.51 -9.36 16.03 5.56 0.09 -9.27 16 9 C -0.09 -1.11 5.83 -29.03 -0.17 -1.28 16 10 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 11 C -0.19 -3.27 9.70 -39.54 -0.38 -3.65 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.22 -4.86 9.17 -39.39 -0.36 -5.22 16 14 C 0.16 3.82 6.65 -39.10 -0.26 3.56 16 15 O -0.22 -5.93 8.59 0.06 0.00 -5.93 16 16 C -0.39 -11.14 9.95 30.89 0.31 -10.83 16 17 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.79 13.96 55.48 0.77 -25.01 16 20 Si 0.91 21.96 28.62 -169.99 -4.86 17.10 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.17 -3.56 9.65 -39.39 -0.38 -3.94 16 25 N -0.51 -4.65 10.38 -10.80 -0.11 -4.76 16 26 C 0.30 2.34 12.29 -92.15 -1.13 1.21 16 27 N -0.52 -4.33 10.38 -10.80 -0.11 -4.44 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.21 8.10 -51.93 -0.42 -0.21 16 31 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.80 8.06 -51.93 -0.42 0.38 16 34 H 0.40 2.85 8.46 -40.82 -0.35 2.50 16 35 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 3.08 5.64 -52.48 -0.30 2.79 16 40 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -35.21 369.44 -8.64 -43.85 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.12 Total: 3.67 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -4.52 Total: -13.46 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.21 Total: -41.52 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.09 Total: -15.20 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.86 Total: 17.10 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.21 -8.64 -43.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760404206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.471 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds