Wall clock time and date at job start Tue Mar 31 2020 14:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38616 * 120.45189 * 2 1 4 4 C 1.38582 * 118.40293 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.44631 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.46890 * 95.00540 * 5 4 3 7 7 C 1.34772 * 120.00100 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00307 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99958 * 180.02562 * 7 6 5 10 10 C 1.50702 * 109.46777 * 180.02562 * 9 7 6 11 11 C 1.38319 * 119.96747 * 269.72164 * 10 9 7 12 12 C 1.38280 * 120.14179 * 179.76848 * 11 10 9 13 13 C 1.38124 * 120.06439 * 0.51546 * 12 11 10 14 14 C 1.38859 * 119.93466 * 359.73936 * 13 12 11 15 15 O 1.35749 * 120.07036 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99829 * 354.48882 * 15 14 13 17 17 H 1.07997 * 120.00450 * 5.05492 * 16 15 14 18 18 C 1.38655 * 119.99461 * 185.06135 * 16 15 14 19 19 N 1.31556 * 119.99866 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00346 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46992 * 90.00251 * 20 18 16 22 22 H 1.48498 * 109.47364 * 210.00545 * 20 18 16 23 23 H 1.48496 * 109.47105 * 330.00375 * 20 18 16 24 24 C 1.38078 * 119.96430 * 90.00456 * 10 9 7 25 25 N 1.32342 * 119.10086 * 0.02562 * 4 3 2 26 26 C 1.31780 * 120.82505 * 359.97438 * 25 4 3 27 27 N 1.31808 * 121.75315 * 0.02562 * 26 25 4 28 28 H 1.09000 * 109.46951 * 89.99643 * 1 2 3 29 29 H 1.08999 * 109.47397 * 210.00076 * 1 2 3 30 30 H 1.09001 * 109.46931 * 329.99930 * 1 2 3 31 31 H 1.08004 * 120.79932 * 0.25322 * 3 2 1 32 32 H 1.09006 * 109.47370 * 215.00275 * 5 4 3 33 33 H 1.09002 * 109.47748 * 335.00689 * 5 4 3 34 34 H 0.97002 * 120.00230 * 359.97438 * 6 5 4 35 35 H 1.08999 * 109.47249 * 299.99730 * 9 7 6 36 36 H 1.09000 * 109.47314 * 60.00599 * 9 7 6 37 37 H 1.08007 * 119.93044 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.96973 * 180.25584 * 12 11 10 39 39 H 1.08007 * 120.03320 * 179.77086 * 13 12 11 40 40 H 0.97001 * 120.00475 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.03882 * 359.94781 * 24 10 9 42 42 H 1.08000 * 119.12809 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1949 0.0000 4 6 3.5945 1.1454 0.0005 5 6 4.4040 2.4164 0.0012 6 7 4.7675 2.7632 1.3774 7 6 5.4978 3.8689 1.6233 8 8 5.8545 4.5766 0.7053 9 6 5.8721 4.2253 3.0389 10 6 6.6816 5.4964 3.0395 11 6 8.0600 5.4378 2.9408 12 6 8.8060 6.6021 2.9362 13 6 8.1770 7.8273 3.0410 14 6 6.7937 7.8894 3.1456 15 8 6.1727 9.0921 3.2492 16 6 6.9609 10.1804 3.3597 17 1 8.0334 10.0807 3.2809 18 6 6.3944 11.4276 3.5745 19 7 7.1633 12.4896 3.6818 20 14 4.5393 11.6001 3.7102 21 1 4.1303 11.4451 5.1292 22 1 4.1297 12.9408 3.2205 23 1 3.8833 10.5514 2.8885 24 6 6.0469 6.7182 3.1445 25 7 4.1963 -0.0332 0.0005 26 6 3.4956 -1.1493 0.0005 27 7 2.1776 -1.1408 0.0000 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6901 2.1419 0.0041 32 1 5.3095 2.2708 -0.5880 33 1 3.8139 3.2234 -0.4331 34 1 4.4825 2.1970 2.1116 35 1 4.9669 4.3712 3.6283 36 1 6.4622 3.4181 3.4729 37 1 8.5545 4.4807 2.8630 38 1 9.8818 6.5532 2.8549 39 1 8.7604 8.7362 3.0411 40 1 6.7671 13.3622 3.8317 41 1 4.9709 6.7633 3.2254 42 1 4.0151 -2.0962 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760404206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:37 Heat of formation + Delta-G solvation = -15.106921 kcal Electronic energy + Delta-G solvation = -25537.711840 eV Core-core repulsion = 21675.682029 eV Total energy + Delta-G solvation = -3862.029811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.18993 -41.15371 -40.43012 -38.33815 -36.61273 -35.10028 -34.47372 -33.80376 -33.26797 -31.09390 -30.02050 -28.93643 -27.44104 -26.97110 -25.13777 -23.41894 -22.89973 -22.42232 -21.45838 -19.66430 -19.01146 -18.70438 -18.24119 -17.45538 -16.88662 -16.80917 -16.69579 -16.45510 -16.18037 -15.91282 -15.70728 -15.62513 -15.02597 -14.76078 -14.52957 -14.28502 -14.16076 -14.07514 -13.86789 -13.81662 -13.73830 -13.13056 -13.03313 -12.78426 -12.51441 -12.43572 -12.33671 -11.92129 -11.90223 -11.62346 -11.30660 -11.02113 -10.89384 -10.55057 -10.34210 -10.20144 -9.66025 -9.05656 -8.49307 -6.22171 -0.22893 -0.06831 0.49883 0.71068 1.30574 1.35424 1.52101 1.65525 2.12682 2.28721 2.71712 2.79933 2.91363 3.05732 3.09211 3.16255 3.30022 3.75718 3.87505 4.01678 4.07480 4.10993 4.25392 4.31461 4.42516 4.45549 4.55749 4.62213 4.64455 4.65861 4.72038 4.72502 4.85005 4.97811 5.06865 5.24983 5.29089 5.40402 5.41308 5.65812 5.73535 5.77448 5.92255 5.97264 6.25371 6.47536 6.84802 7.03538 7.23526 7.59621 8.62457 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.002185 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.728222 B =12809.749197 C =14039.141222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.170 3.830 3 C -0.206 4.206 4 C 0.154 3.846 5 C 0.174 3.826 6 N -0.712 5.712 7 C 0.520 3.480 8 O -0.573 6.573 9 C -0.089 4.089 10 C -0.028 4.028 11 C -0.172 4.172 12 C -0.079 4.079 13 C -0.241 4.241 14 C 0.118 3.882 15 O -0.246 6.246 16 C -0.399 4.399 17 H 0.079 0.921 18 C 0.007 3.993 19 N -0.924 5.924 20 Si 0.973 3.027 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.265 1.265 24 C -0.179 4.179 25 N -0.532 5.532 26 C 0.293 3.707 27 N -0.537 5.537 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.172 0.828 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.285 0.715 41 H 0.125 0.875 42 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.122 -30.002 -4.077 32.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.024 3.976 3 C -0.228 4.228 4 C 0.008 3.992 5 C 0.049 3.951 6 N -0.366 5.366 7 C 0.307 3.693 8 O -0.451 6.451 9 C -0.128 4.128 10 C -0.029 4.029 11 C -0.190 4.190 12 C -0.097 4.097 13 C -0.260 4.260 14 C 0.069 3.931 15 O -0.154 6.154 16 C -0.476 4.476 17 H 0.096 0.904 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.795 3.205 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.189 1.189 24 C -0.198 4.198 25 N -0.247 5.247 26 C 0.006 3.994 27 N -0.253 5.253 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.189 0.811 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.252 0.748 35 H 0.148 0.852 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.143 0.857 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.607 -30.079 -4.716 32.954 hybrid contribution -0.370 1.365 0.118 1.419 sum -12.977 -28.715 -4.598 31.845 Atomic orbital electron populations 1.20925 0.85489 1.05245 1.04785 1.22341 0.99234 0.87769 0.88295 1.22926 0.94861 1.01949 1.03040 1.21573 0.92013 0.93293 0.92300 1.20041 0.98732 0.91359 0.84944 1.45688 1.55518 1.26732 1.08658 1.20916 0.76873 0.79728 0.91737 1.90781 1.54703 1.51732 1.47838 1.20690 1.02768 0.95984 0.93335 1.19201 0.93898 0.92911 0.96885 1.21022 0.93269 0.98508 1.06204 1.21108 1.00462 0.91299 0.96826 1.21324 0.94352 0.99358 1.10965 1.19609 0.92185 0.85985 0.95310 1.83502 1.36010 1.12552 1.83314 1.20702 0.91357 0.84486 1.51024 0.90373 1.25315 1.05007 0.93234 0.95516 1.69734 1.37857 0.99635 1.49285 0.85187 0.77831 0.77970 0.79517 1.18684 1.19171 1.18947 1.20288 0.99571 0.89759 1.10224 1.68268 1.42715 0.99205 1.14507 1.25493 0.86769 0.97361 0.89806 1.68369 1.10775 1.31266 1.14864 0.88472 0.89760 0.88040 0.81059 0.90682 0.88934 0.74844 0.85167 0.84094 0.83522 0.84312 0.87583 0.90589 0.85693 0.76324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.22 71.24 0.73 0.15 16 2 C 0.17 1.98 6.82 42.57 0.29 2.27 16 3 C -0.21 -2.27 9.52 22.44 0.21 -2.06 16 4 C 0.15 2.25 6.19 42.56 0.26 2.51 16 5 C 0.17 2.88 6.03 85.63 0.52 3.40 16 6 N -0.71 -11.28 5.55 -466.78 -2.59 -13.87 16 7 C 0.52 12.12 7.82 87.66 0.69 12.81 16 8 O -0.57 -19.91 16.03 -3.03 -0.05 -19.95 16 9 C -0.09 -1.73 5.83 29.10 0.17 -1.56 16 10 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 11 C -0.17 -5.41 9.70 22.30 0.22 -5.19 16 12 C -0.08 -2.91 10.04 22.25 0.22 -2.68 16 13 C -0.24 -11.25 9.17 22.39 0.21 -11.04 16 14 C 0.12 5.82 6.65 22.58 0.15 5.97 16 15 O -0.25 -13.92 8.59 -22.69 -0.19 -14.12 16 16 C -0.40 -24.37 9.95 67.92 0.68 -23.70 16 17 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 18 C 0.01 0.43 5.49 84.83 0.47 0.90 16 19 N -0.92 -56.41 13.96 21.61 0.30 -56.11 16 20 Si 0.97 46.40 28.62 68.60 1.96 48.37 16 21 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 24 C -0.18 -7.17 9.65 22.39 0.22 -6.96 16 25 N -0.53 -8.73 10.38 -188.09 -1.95 -10.68 16 26 C 0.29 4.07 12.29 180.88 2.22 6.29 16 27 N -0.54 -7.92 10.38 -188.07 -1.95 -9.87 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.18 8.10 -2.39 -0.02 0.17 16 31 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.09 1.51 8.06 -2.39 -0.02 1.49 16 34 H 0.42 4.23 8.46 -92.71 -0.78 3.44 16 35 H 0.13 1.86 8.08 -2.39 -0.02 1.84 16 36 H 0.14 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 38 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.11 5.42 5.64 -2.91 -0.02 5.40 16 40 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 41 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.22 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -81.98 369.44 2.96 -79.02 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.28 Total: 17.09 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 7.16 Total: -19.88 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -6.19 Total: -90.53 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.24 Total: -34.07 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.96 Total: 48.37 kcal Total: -81.98 2.96 -79.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760404206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.911 kcal (2) G-P(sol) polarization free energy of solvation -81.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds