Wall clock time and date at job start Tue Mar 31 2020 15:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29945 * 126.28631 * 2 1 4 4 O 1.21302 * 110.24502 * 180.02562 * 3 2 1 5 5 C 1.33633 * 109.81475 * 0.02562 * 4 3 2 6 6 C 1.50709 * 126.55012 * 179.97438 * 5 4 3 7 7 C 1.53947 * 113.74014 * 300.02337 * 6 5 4 8 8 N 1.47586 * 86.23793 * 137.89660 * 7 6 5 9 9 C 1.34777 * 134.48945 * 155.42707 * 8 7 6 10 10 O 1.21276 * 120.00284 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99528 * 180.02562 * 9 8 7 12 12 C 1.50704 * 109.46977 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.12514 * 264.72409 * 12 11 9 14 14 C 1.38618 * 120.24375 * 179.71974 * 13 12 11 15 15 C 1.38660 * 120.50230 * 0.55780 * 14 13 12 16 16 C 1.37595 * 120.24764 * 359.72237 * 15 14 13 17 17 C 1.40697 * 120.12577 * 84.99652 * 12 11 9 18 18 C 1.41399 * 120.24850 * 359.97438 * 17 12 11 19 19 H 1.08000 * 119.99365 * 334.05630 * 18 17 12 20 20 C 1.39943 * 120.00135 * 154.05820 * 18 17 12 21 21 N 1.30826 * 119.99939 * 343.65572 * 20 18 17 22 22 Si 1.86799 * 119.99773 * 163.65634 * 20 18 17 23 23 H 1.48496 * 109.47072 * 60.00068 * 22 20 18 24 24 H 1.48507 * 109.46918 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47227 * 299.99856 * 22 20 18 26 26 C 1.47807 * 90.92503 * 335.46032 * 8 7 6 27 27 N 1.31123 * 106.89807 * 0.22739 * 5 4 3 28 28 H 1.09004 * 109.47561 * 89.96998 * 1 2 3 29 29 H 1.08998 * 109.47031 * 209.97410 * 1 2 3 30 30 H 1.09000 * 109.46721 * 329.96711 * 1 2 3 31 31 H 1.08995 * 113.01431 * 168.36499 * 6 5 4 32 32 H 1.08994 * 113.77023 * 252.25585 * 7 6 5 33 33 H 1.09004 * 113.76773 * 23.54348 * 7 6 5 34 34 H 1.09001 * 109.47258 * 299.99481 * 11 9 8 35 35 H 1.08994 * 109.47540 * 59.99867 * 11 9 8 36 36 H 1.08001 * 119.87906 * 359.97413 * 13 12 11 37 37 H 1.08004 * 119.75122 * 180.30229 * 14 13 12 38 38 H 1.07998 * 119.87541 * 179.74267 * 15 14 13 39 39 H 1.08002 * 120.12629 * 179.97438 * 16 15 14 40 40 H 0.96995 * 119.99784 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.66626 * 270.23411 * 26 8 7 42 42 H 1.08996 * 113.93789 * 138.88130 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5298 -0.6212 -0.0015 6 6 4.7969 -1.4371 -0.0029 7 6 5.6989 -1.1789 -1.2234 8 7 6.8274 -1.2035 -0.2726 9 6 8.1449 -1.4674 -0.3770 10 8 8.6206 -1.7641 -1.4525 11 6 9.0269 -1.3948 0.8428 12 6 10.4445 -1.7320 0.4584 13 6 10.9136 -3.0173 0.6076 14 6 12.2154 -3.3314 0.2495 15 6 13.0626 -2.3548 -0.2515 16 6 12.6168 -1.0620 -0.4038 17 6 11.2953 -0.7328 -0.0489 18 6 10.8259 0.5922 -0.2017 19 1 9.7714 0.7787 -0.3420 20 6 11.7277 1.6619 -0.1711 21 7 12.9326 1.4882 0.3083 22 14 11.2111 3.3377 -0.8148 23 1 10.0454 3.8289 -0.0370 24 1 12.3394 4.2925 -0.6709 25 1 10.8378 3.2241 -2.2476 26 6 5.9303 -0.8232 0.8389 27 7 2.3030 -1.0841 -0.0065 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5144 31 1 4.6234 -2.4940 0.1989 32 1 5.7116 -1.9988 -1.9416 33 1 5.5389 -0.2070 -1.6903 34 1 8.9922 -0.3871 1.2568 35 1 8.6741 -2.1066 1.5891 36 1 10.2639 -3.7849 1.0014 37 1 12.5737 -4.3437 0.3653 38 1 14.0762 -2.6099 -0.5235 39 1 13.2785 -0.3028 -0.7938 40 1 13.5575 2.2297 0.3298 41 1 5.8396 0.2539 0.9790 42 1 6.1264 -1.3580 1.7682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765667235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:34 Heat of formation + Delta-G solvation = 89.623120 kcal Electronic energy + Delta-G solvation = -26699.199796 eV Core-core repulsion = 22841.711420 eV Total energy + Delta-G solvation = -3857.488375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.88289 -40.23494 -38.14339 -36.89513 -36.35294 -33.61219 -33.39781 -31.77708 -30.00794 -29.45505 -29.21951 -27.02028 -26.19593 -25.07103 -24.23424 -23.51251 -20.96979 -20.85541 -19.84460 -18.67708 -18.41814 -17.73867 -17.15137 -16.71874 -16.56740 -15.59597 -15.21785 -14.52566 -14.50763 -14.38967 -13.96057 -13.63691 -13.55503 -13.30223 -13.10722 -12.99365 -12.79343 -12.62404 -12.52859 -12.17240 -11.93746 -11.71049 -11.55231 -11.33907 -11.32361 -11.16422 -11.04560 -10.96821 -10.68441 -10.39885 -10.10700 -9.47936 -9.38388 -9.25440 -9.14459 -8.61296 -7.30877 -7.28788 -6.72847 -4.33757 0.80476 1.88599 2.35878 2.74141 2.88146 3.07155 3.10229 3.12477 3.17557 3.29178 3.39168 3.71855 3.94669 3.95103 4.43402 4.53261 4.67171 4.84555 4.99439 5.02688 5.08375 5.18624 5.23793 5.27318 5.46424 5.55164 5.64725 5.72940 5.76708 5.83638 6.03160 6.23426 6.29637 6.42602 6.52033 6.80428 7.09513 7.30250 7.42993 7.64413 7.84100 7.87446 7.93908 8.07721 8.13967 8.32094 8.64375 8.71727 8.92222 9.02156 10.21373 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.003055 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.990725 B = 9162.824105 C =10679.141977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.384 5.384 4 O 0.083 5.917 5 C 0.197 3.803 6 C -0.038 4.038 7 C 0.120 3.880 8 N -0.655 5.655 9 C 0.543 3.457 10 O -0.510 6.510 11 C -0.063 4.063 12 C -0.185 4.185 13 C -0.080 4.080 14 C -0.240 4.240 15 C -0.106 4.106 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.457 4.457 19 H 0.073 0.927 20 C 0.078 3.922 21 N -0.795 5.795 22 Si 0.902 3.098 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.264 1.264 26 C 0.116 3.884 27 N -0.479 5.479 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.280 0.720 41 H 0.094 0.906 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.182 -1.849 2.500 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.092 5.092 4 O 0.024 5.976 5 C -0.024 4.024 6 C -0.059 4.059 7 C -0.004 4.004 8 N -0.395 5.395 9 C 0.334 3.666 10 O -0.383 6.383 11 C -0.102 4.102 12 C -0.187 4.187 13 C -0.098 4.098 14 C -0.259 4.259 15 C -0.125 4.125 16 C -0.178 4.178 17 C 0.127 3.873 18 C -0.486 4.486 19 H 0.091 0.909 20 C -0.140 4.140 21 N -0.420 5.420 22 Si 0.727 3.273 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.008 4.008 27 N -0.213 5.213 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.072 -1.413 1.933 19.222 hybrid contribution -0.092 0.847 -0.281 0.897 sum -19.164 -0.566 1.652 19.243 Atomic orbital electron populations 1.20143 0.82895 1.04692 1.04342 1.25937 1.00650 0.83517 1.00587 1.74683 0.89340 1.23840 1.21364 1.85306 1.22330 1.24519 1.65428 1.28449 0.96277 0.82186 0.95492 1.22082 0.83959 0.99234 1.00669 1.23049 0.81539 1.03136 0.92662 1.50159 1.06720 1.71840 1.10771 1.21106 0.78514 0.74925 0.92025 1.90712 1.71695 1.46057 1.29809 1.20214 0.92837 1.03408 0.93747 1.19045 0.93768 0.94741 1.11180 1.20297 0.95073 0.94604 0.99822 1.20313 0.95327 0.97533 1.12771 1.20681 0.97328 0.94177 1.00274 1.21297 0.97469 0.94668 1.04407 1.17338 0.91129 0.91959 0.86890 1.19430 0.94733 0.90517 1.43956 0.90885 1.25871 0.94418 1.01138 0.92570 1.69809 1.05969 1.33731 1.32504 0.86459 0.79118 0.81012 0.80712 1.19024 1.20313 1.18867 1.23222 0.83735 1.01206 0.92687 1.71906 0.99624 1.29404 1.20387 0.89302 0.88984 0.89480 0.83495 0.88774 0.89447 0.88464 0.90499 0.89711 0.89628 0.89561 0.86529 0.90886 0.88747 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.01 0.38 -0.01 16 2 C 0.17 1.72 8.22 -156.38 -1.28 0.43 16 3 N -0.38 -4.56 12.16 30.89 0.38 -4.18 16 4 O 0.08 0.93 11.05 18.13 0.20 1.13 16 5 C 0.20 1.97 7.53 -13.06 -0.10 1.87 16 6 C -0.04 -0.33 4.48 -90.83 -0.41 -0.73 16 7 C 0.12 1.32 8.38 -2.97 -0.02 1.29 16 8 N -0.65 -9.07 3.62 -177.43 -0.64 -9.71 16 9 C 0.54 10.35 7.69 -10.99 -0.08 10.26 16 10 O -0.51 -12.14 16.76 5.56 0.09 -12.04 16 11 C -0.06 -1.19 4.94 -29.03 -0.14 -1.34 16 12 C -0.19 -4.41 4.43 -103.91 -0.46 -4.87 16 13 C -0.08 -1.82 9.66 -39.66 -0.38 -2.20 16 14 C -0.24 -5.56 10.05 -39.29 -0.39 -5.95 16 15 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 16 C -0.16 -4.25 8.69 -38.87 -0.34 -4.58 16 17 C 0.13 3.44 5.56 -106.82 -0.59 2.85 16 18 C -0.46 -11.96 8.14 -37.74 -0.31 -12.26 16 19 H 0.07 1.86 6.68 -52.49 -0.35 1.51 16 20 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 21 N -0.79 -20.46 10.97 55.55 0.61 -19.85 16 22 Si 0.90 18.89 29.59 -169.99 -5.03 13.86 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 26 C 0.12 1.08 8.18 -2.85 -0.02 1.05 16 27 N -0.48 -5.23 11.55 -9.88 -0.11 -5.34 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.10 1.84 7.06 -51.93 -0.37 1.47 16 35 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 36 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 40 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 41 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -33.08 363.94 -8.91 -41.99 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.23 Total: 3.98 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -4.65 Total: -15.32 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.23 Total: -39.08 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.29 Total: -10.91 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.08 -8.91 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765667235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.609 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds