Wall clock time and date at job start Tue Mar 31 2020 15:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29945 * 126.28631 * 2 1 4 4 O 1.21302 * 110.24502 * 180.02562 * 3 2 1 5 5 C 1.33633 * 109.81475 * 0.02562 * 4 3 2 6 6 C 1.50709 * 126.55012 * 179.97438 * 5 4 3 7 7 C 1.53947 * 113.74014 * 300.02337 * 6 5 4 8 8 N 1.47586 * 86.23793 * 137.89660 * 7 6 5 9 9 C 1.34777 * 134.48945 * 155.42707 * 8 7 6 10 10 O 1.21276 * 120.00284 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99528 * 180.02562 * 9 8 7 12 12 C 1.50704 * 109.46977 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.12514 * 264.72409 * 12 11 9 14 14 C 1.38618 * 120.24375 * 179.71974 * 13 12 11 15 15 C 1.38660 * 120.50230 * 0.55780 * 14 13 12 16 16 C 1.37595 * 120.24764 * 359.72237 * 15 14 13 17 17 C 1.40697 * 120.12577 * 84.99652 * 12 11 9 18 18 C 1.41399 * 120.24850 * 359.97438 * 17 12 11 19 19 H 1.08000 * 119.99365 * 334.05630 * 18 17 12 20 20 C 1.39943 * 120.00135 * 154.05820 * 18 17 12 21 21 N 1.30826 * 119.99939 * 343.65572 * 20 18 17 22 22 Si 1.86799 * 119.99773 * 163.65634 * 20 18 17 23 23 H 1.48496 * 109.47072 * 60.00068 * 22 20 18 24 24 H 1.48507 * 109.46918 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47227 * 299.99856 * 22 20 18 26 26 C 1.47807 * 90.92503 * 335.46032 * 8 7 6 27 27 N 1.31123 * 106.89807 * 0.22739 * 5 4 3 28 28 H 1.09004 * 109.47561 * 89.96998 * 1 2 3 29 29 H 1.08998 * 109.47031 * 209.97410 * 1 2 3 30 30 H 1.09000 * 109.46721 * 329.96711 * 1 2 3 31 31 H 1.08995 * 113.01431 * 168.36499 * 6 5 4 32 32 H 1.08994 * 113.77023 * 252.25585 * 7 6 5 33 33 H 1.09004 * 113.76773 * 23.54348 * 7 6 5 34 34 H 1.09001 * 109.47258 * 299.99481 * 11 9 8 35 35 H 1.08994 * 109.47540 * 59.99867 * 11 9 8 36 36 H 1.08001 * 119.87906 * 359.97413 * 13 12 11 37 37 H 1.08004 * 119.75122 * 180.30229 * 14 13 12 38 38 H 1.07998 * 119.87541 * 179.74267 * 15 14 13 39 39 H 1.08002 * 120.12629 * 179.97438 * 16 15 14 40 40 H 0.96995 * 119.99784 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.66626 * 270.23411 * 26 8 7 42 42 H 1.08996 * 113.93789 * 138.88130 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5298 -0.6212 -0.0015 6 6 4.7969 -1.4371 -0.0029 7 6 5.6989 -1.1789 -1.2234 8 7 6.8274 -1.2035 -0.2726 9 6 8.1449 -1.4674 -0.3770 10 8 8.6206 -1.7641 -1.4525 11 6 9.0269 -1.3948 0.8428 12 6 10.4445 -1.7320 0.4584 13 6 10.9136 -3.0173 0.6076 14 6 12.2154 -3.3314 0.2495 15 6 13.0626 -2.3548 -0.2515 16 6 12.6168 -1.0620 -0.4038 17 6 11.2953 -0.7328 -0.0489 18 6 10.8259 0.5922 -0.2017 19 1 9.7714 0.7787 -0.3420 20 6 11.7277 1.6619 -0.1711 21 7 12.9326 1.4882 0.3083 22 14 11.2111 3.3377 -0.8148 23 1 10.0454 3.8289 -0.0370 24 1 12.3394 4.2925 -0.6709 25 1 10.8378 3.2241 -2.2476 26 6 5.9303 -0.8232 0.8389 27 7 2.3030 -1.0841 -0.0065 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5144 31 1 4.6234 -2.4940 0.1989 32 1 5.7116 -1.9988 -1.9416 33 1 5.5389 -0.2070 -1.6903 34 1 8.9922 -0.3871 1.2568 35 1 8.6741 -2.1066 1.5891 36 1 10.2639 -3.7849 1.0014 37 1 12.5737 -4.3437 0.3653 38 1 14.0762 -2.6099 -0.5235 39 1 13.2785 -0.3028 -0.7938 40 1 13.5575 2.2297 0.3298 41 1 5.8396 0.2539 0.9790 42 1 6.1264 -1.3580 1.7682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765667235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:33 Heat of formation + Delta-G solvation = 68.516369 kcal Electronic energy + Delta-G solvation = -26700.115053 eV Core-core repulsion = 22841.711420 eV Total energy + Delta-G solvation = -3858.403633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.68295 -41.35263 -39.69966 -38.48472 -37.12729 -35.48832 -34.25006 -33.43438 -31.36836 -30.99233 -30.00038 -28.42196 -27.28756 -26.76278 -25.24704 -24.36861 -22.80901 -22.00839 -21.26726 -19.86111 -19.24062 -19.04028 -18.60058 -17.87575 -17.52100 -17.28421 -16.68328 -16.12329 -16.00254 -15.37543 -15.11487 -14.97976 -14.49213 -14.39028 -14.36542 -14.07212 -13.85023 -13.81183 -13.46018 -13.36023 -13.28526 -13.01930 -12.90574 -12.78960 -12.72430 -12.61505 -12.46628 -12.12832 -12.11782 -12.07136 -11.30502 -11.20549 -11.02170 -10.89998 -10.77056 -9.75725 -9.21159 -9.14710 -8.58914 -6.28422 0.01076 0.99594 1.11873 1.13985 1.35670 1.45381 1.54183 1.55610 1.72665 2.04314 2.19728 2.59654 2.79155 3.03105 3.14859 3.48481 3.80119 3.84128 4.04890 4.15645 4.30458 4.41736 4.43060 4.48609 4.53593 4.58830 4.59166 4.63613 4.68005 4.72742 4.82028 4.86737 4.96085 4.99885 5.10326 5.10619 5.21129 5.38416 5.56539 5.79027 6.05414 6.17964 6.23457 6.43356 6.63762 6.75277 7.00157 7.08712 7.12739 7.31752 8.37433 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.003055 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.990725 B = 9162.824105 C =10679.141977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.164 3.836 3 N -0.409 5.409 4 O 0.070 5.930 5 C 0.203 3.797 6 C -0.013 4.013 7 C 0.113 3.887 8 N -0.656 5.656 9 C 0.544 3.456 10 O -0.572 6.572 11 C -0.061 4.061 12 C -0.190 4.190 13 C -0.089 4.089 14 C -0.243 4.243 15 C -0.117 4.117 16 C -0.195 4.195 17 C 0.095 3.905 18 C -0.482 4.482 19 H 0.070 0.930 20 C 0.037 3.963 21 N -0.826 5.826 22 Si 0.968 3.032 23 H -0.253 1.253 24 H -0.267 1.267 25 H -0.272 1.272 26 C 0.115 3.885 27 N -0.492 5.492 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.170 0.830 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.286 0.714 41 H 0.102 0.898 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.763 -2.473 3.670 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.120 5.120 4 O 0.014 5.986 5 C -0.018 4.018 6 C -0.034 4.034 7 C -0.011 4.011 8 N -0.393 5.393 9 C 0.336 3.664 10 O -0.450 6.450 11 C -0.100 4.100 12 C -0.192 4.192 13 C -0.107 4.107 14 C -0.262 4.262 15 C -0.136 4.136 16 C -0.215 4.215 17 C 0.093 3.907 18 C -0.512 4.512 19 H 0.088 0.912 20 C -0.177 4.177 21 N -0.452 5.452 22 Si 0.789 3.211 23 H -0.177 1.177 24 H -0.191 1.191 25 H -0.197 1.197 26 C -0.008 4.008 27 N -0.226 5.226 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.188 0.812 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.695 -2.031 3.148 22.016 hybrid contribution 0.613 0.929 -0.620 1.274 sum -21.082 -1.102 2.527 21.261 Atomic orbital electron populations 1.20367 0.80355 1.05894 1.05548 1.26667 1.02176 0.82935 0.99078 1.74689 0.89660 1.24767 1.22882 1.85279 1.22380 1.25044 1.65856 1.28610 0.96534 0.81898 0.94777 1.21935 0.82802 1.00050 0.98582 1.23255 0.80810 1.03514 0.93520 1.50036 1.05788 1.69883 1.13580 1.20866 0.80054 0.74652 0.90857 1.90683 1.73453 1.49321 1.31555 1.20209 0.90654 1.04352 0.94800 1.19564 0.95741 0.94609 1.09288 1.20755 0.95536 0.95127 0.99299 1.20742 0.95442 0.98579 1.11444 1.20951 0.98617 0.93729 1.00261 1.21305 0.98044 0.95429 1.06677 1.17747 0.91796 0.93223 0.87976 1.19572 0.94866 0.91199 1.45550 0.91169 1.26636 0.94300 1.04501 0.92303 1.69873 1.06953 1.35001 1.33400 0.85467 0.79377 0.76797 0.79434 1.17654 1.19109 1.19695 1.23569 0.82117 1.02315 0.92786 1.71929 0.99968 1.29792 1.20946 0.87971 0.87626 0.88418 0.81215 0.88579 0.89280 0.88627 0.86570 0.86195 0.86609 0.87763 0.88651 0.90375 0.87986 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.24 0.75 0.11 16 2 C 0.16 3.08 8.22 138.46 1.14 4.22 16 3 N -0.41 -9.14 12.16 -60.35 -0.73 -9.87 16 4 O 0.07 1.47 11.05 74.92 0.83 2.30 16 5 C 0.20 3.60 7.53 88.38 0.67 4.27 16 6 C -0.01 -0.18 4.48 -10.88 -0.05 -0.23 16 7 C 0.11 2.29 8.38 86.48 0.72 3.01 16 8 N -0.66 -16.98 3.62 -833.66 -3.02 -19.99 16 9 C 0.54 20.33 7.69 87.66 0.67 21.01 16 10 O -0.57 -27.65 16.76 -3.02 -0.05 -27.71 16 11 C -0.06 -2.24 4.94 29.10 0.14 -2.10 16 12 C -0.19 -9.03 4.43 -19.40 -0.09 -9.12 16 13 C -0.09 -3.93 9.66 22.22 0.21 -3.72 16 14 C -0.24 -10.97 10.05 22.46 0.23 -10.75 16 15 C -0.12 -5.79 10.02 22.22 0.22 -5.56 16 16 C -0.20 -10.85 8.69 22.73 0.20 -10.65 16 17 C 0.09 5.20 5.56 -21.29 -0.12 5.08 16 18 C -0.48 -26.07 8.14 23.46 0.19 -25.88 16 19 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 20 C 0.04 1.91 5.16 85.26 0.44 2.35 16 21 N -0.83 -44.04 10.97 21.83 0.24 -43.80 16 22 Si 0.97 39.42 29.59 68.60 2.03 41.45 16 23 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 C 0.11 1.78 8.18 86.44 0.71 2.49 16 27 N -0.49 -9.62 11.55 -303.24 -3.50 -13.12 16 28 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.17 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 1.81 8.09 -2.38 -0.02 1.79 16 34 H 0.10 3.55 7.06 -2.39 -0.02 3.53 16 35 H 0.12 3.26 8.05 -2.39 -0.02 3.25 16 36 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.10 5.56 6.22 -2.91 -0.02 5.54 16 40 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 41 H 0.10 1.52 7.87 -2.39 -0.02 1.50 16 42 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -75.34 363.94 2.89 -72.46 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 1.05 Total: 23.76 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 6.04 Total: -25.48 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -7.01 Total: -86.79 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: 0.78 Total: -25.40 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -75.34 2.89 -72.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765667235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.975 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds