Wall clock time and date at job start Tue Mar 31 2020 14:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38551 * 120.01447 * 2 1 4 4 C 1.40068 * 117.81700 * 179.97438 * 3 2 1 5 5 C 1.48139 * 121.14718 * 179.97438 * 4 3 2 6 6 O 1.21519 * 120.00206 * 183.62888 * 5 4 3 7 7 N 1.34773 * 119.99987 * 3.63088 * 5 4 3 8 8 C 1.46498 * 120.00390 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47382 * 180.02562 * 8 7 5 10 10 C 1.38297 * 119.92669 * 269.72821 * 9 8 7 11 11 C 1.38103 * 120.07080 * 179.72474 * 10 9 8 12 12 C 1.38882 * 119.92643 * 0.56884 * 11 10 9 13 13 O 1.35746 * 120.07283 * 179.68211 * 12 11 10 14 14 C 1.34828 * 117.00607 * 185.92914 * 13 12 11 15 15 H 1.08006 * 119.99495 * 354.88850 * 14 13 12 16 16 C 1.38647 * 120.00268 * 174.89460 * 14 13 12 17 17 N 1.31557 * 119.99951 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00143 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46731 * 90.00512 * 18 16 14 20 20 H 1.48493 * 109.47285 * 209.99978 * 18 16 14 21 21 H 1.48502 * 109.47043 * 330.00748 * 18 16 14 22 22 C 1.38884 * 119.85913 * 359.70221 * 12 11 10 23 23 C 1.38093 * 119.93353 * 0.02562 * 22 12 11 24 24 C 1.39770 * 117.70971 * 0.02562 * 4 3 2 25 25 C 1.50696 * 120.17290 * 179.97438 * 24 4 3 26 26 N 1.31893 * 119.65485 * 0.28075 * 24 4 3 27 27 N 1.28286 * 122.32796 * 359.41528 * 26 24 4 28 28 H 1.08999 * 109.47533 * 89.99791 * 1 2 3 29 29 H 1.09000 * 109.47091 * 209.99791 * 1 2 3 30 30 H 1.09003 * 109.46882 * 329.99226 * 1 2 3 31 31 H 1.07997 * 121.08802 * 359.96106 * 3 2 1 32 32 H 0.97003 * 119.99612 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.46656 * 300.00012 * 8 7 5 34 34 H 1.08993 * 109.47184 * 59.99766 * 8 7 5 35 35 H 1.08000 * 119.97006 * 359.97125 * 10 9 8 36 36 H 1.07994 * 120.04219 * 180.26778 * 11 10 9 37 37 H 0.97003 * 120.00046 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.02969 * 179.97438 * 22 12 11 39 39 H 1.08000 * 119.96737 * 179.97438 * 23 22 12 40 40 H 1.09004 * 109.47226 * 83.19675 * 25 24 4 41 41 H 1.09006 * 109.47372 * 203.18964 * 25 24 4 42 42 H 1.08992 * 109.47453 * 323.19355 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 0.0006 5 6 4.4140 2.3835 0.0000 6 8 5.6254 2.3138 -0.0661 7 7 3.8113 3.5868 0.0729 8 6 4.6164 4.8107 0.0718 9 6 3.7080 6.0097 0.1614 10 6 3.2327 6.6031 -0.9938 11 6 2.3955 7.6986 -0.9151 12 6 2.0404 8.2115 0.3257 13 8 1.2228 9.2921 0.4064 14 6 1.0166 9.8137 1.6325 15 1 1.4257 9.3233 2.5036 16 6 0.2794 10.9792 1.7752 17 7 0.0787 11.4883 2.9715 18 14 -0.4276 11.8275 0.2685 19 1 -1.7867 11.2960 -0.0065 20 1 -0.5085 13.2894 0.5159 21 1 0.4503 11.5712 -0.9014 22 6 2.5239 7.6167 1.4839 23 6 3.3562 6.5181 1.3985 24 6 4.2017 -0.1154 0.0005 25 6 5.7037 -0.2379 0.0005 26 7 3.4483 -1.1980 -0.0056 27 7 2.1667 -1.1420 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 1.6781 2.1452 -0.0006 32 1 2.8443 3.6424 0.1261 33 1 5.2916 4.8021 0.9275 34 1 5.1974 4.8625 -0.8489 35 1 3.5134 6.2070 -1.9586 36 1 2.0212 8.1589 -1.8174 37 1 -0.4367 12.3039 3.0713 38 1 2.2499 8.0136 2.4503 39 1 3.7329 6.0554 2.2988 40 1 6.0757 -0.1461 1.0210 41 1 5.9891 -1.2089 -0.4042 42 1 6.1327 0.5526 -0.6151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767399448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:13 Heat of formation + Delta-G solvation = 18.170235 kcal Electronic energy + Delta-G solvation = -25930.213851 eV Core-core repulsion = 22069.627046 eV Total energy + Delta-G solvation = -3860.586805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68924 -39.84877 -39.26033 -37.19937 -35.23472 -34.46351 -33.87071 -32.56362 -30.80653 -30.46883 -29.69085 -27.13422 -26.50074 -25.38237 -24.44931 -22.93274 -22.29709 -20.98031 -20.75816 -18.23411 -18.06469 -17.99855 -17.38960 -16.11770 -16.02609 -15.90471 -15.35269 -15.15014 -14.84003 -14.47945 -14.22693 -13.98454 -13.90750 -13.71960 -13.62991 -13.46811 -13.03241 -12.97460 -12.83236 -12.67636 -12.38781 -12.35554 -12.14195 -11.59800 -11.33393 -11.07557 -10.95636 -10.86611 -10.62965 -10.59880 -10.29562 -9.84804 -9.71817 -9.57784 -9.27809 -9.03378 -8.49814 -7.59856 -6.57752 -4.25174 -0.03921 0.47645 1.79178 1.91453 2.45128 2.89627 3.12249 3.14809 3.22599 3.28407 3.56699 3.87618 3.99822 4.09576 4.20060 4.30916 4.40835 4.63589 4.72952 4.87286 4.94408 4.99087 5.10713 5.14527 5.19785 5.37117 5.41532 5.43695 5.46189 5.58929 5.66422 5.70384 5.80537 5.92355 6.01634 6.12757 6.22926 6.34462 6.56247 6.77632 7.00139 7.07129 7.19749 7.39212 7.61478 7.82646 7.85537 8.32547 8.76320 9.35834 10.49151 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.002320 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.191049 B =12067.471026 C =12911.223515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.058 3.942 3 C -0.080 4.080 4 C -0.129 4.129 5 C 0.559 3.441 6 O -0.523 6.523 7 N -0.710 5.710 8 C 0.178 3.822 9 C -0.212 4.212 10 C -0.055 4.055 11 C -0.195 4.195 12 C 0.168 3.832 13 O -0.211 6.211 14 C -0.393 4.393 15 H 0.108 0.892 16 C 0.065 3.935 17 N -0.873 5.873 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.224 4.224 23 C -0.051 4.051 24 C 0.117 3.883 25 C -0.111 4.111 26 N -0.243 5.243 27 N -0.225 5.225 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.156 0.844 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.282 0.718 38 H 0.135 0.865 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -18.211 -6.385 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.086 4.086 3 C -0.110 4.110 4 C -0.144 4.144 5 C 0.344 3.656 6 O -0.400 6.400 7 N -0.361 5.361 8 C 0.056 3.944 9 C -0.214 4.214 10 C -0.074 4.074 11 C -0.214 4.214 12 C 0.114 3.886 13 O -0.114 6.114 14 C -0.468 4.468 15 H 0.125 0.875 16 C -0.139 4.139 17 N -0.510 5.510 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.183 1.183 22 C -0.243 4.243 23 C -0.070 4.070 24 C -0.027 4.027 25 C -0.169 4.169 26 N -0.085 5.085 27 N -0.068 5.068 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.173 0.827 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.489 -19.549 -6.458 21.072 hybrid contribution -0.921 2.170 -0.237 2.369 sum 3.569 -17.379 -6.695 18.962 Atomic orbital electron populations 1.20722 0.86804 1.04507 1.03974 1.22886 0.99418 0.89861 0.96473 1.22600 0.93366 1.00627 0.94411 1.21155 0.94321 0.95831 1.03067 1.17903 0.87353 0.82893 0.77454 1.90724 1.13310 1.86461 1.49511 1.46288 1.11190 1.05415 1.73250 1.20091 0.91863 0.79985 1.02436 1.19225 1.07485 1.00870 0.93796 1.20537 0.95417 0.94419 0.97012 1.20218 1.04999 1.00659 0.95561 1.19194 0.88528 0.87419 0.93413 1.83570 1.55980 1.38557 1.33341 1.20791 1.35239 1.08791 0.81992 0.87453 1.24499 0.96115 0.95412 0.97880 1.69639 1.38288 1.21306 1.21739 0.86169 0.79965 0.78254 0.82480 1.19758 1.20634 1.18281 1.21286 1.04132 0.99622 0.99308 1.20702 0.95360 0.94740 0.96152 1.23153 0.99761 0.88460 0.91373 1.21065 0.86396 1.04687 1.04716 1.73074 0.98933 1.26347 1.10161 1.72815 1.01848 1.24980 1.07190 0.89565 0.89671 0.89819 0.82670 0.76301 0.90891 0.90905 0.86733 0.86298 0.90802 0.84734 0.87060 0.89606 0.90609 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.19 36.00 0.37 -0.23 16 2 C 0.06 0.54 6.86 -82.45 -0.57 -0.03 16 3 C -0.08 -0.68 9.35 -38.78 -0.36 -1.05 16 4 C -0.13 -1.36 5.92 -104.57 -0.62 -1.98 16 5 C 0.56 6.32 7.77 -12.20 -0.09 6.23 16 6 O -0.52 -7.06 13.42 5.35 0.07 -6.99 16 7 N -0.71 -7.26 5.51 -62.34 -0.34 -7.60 16 8 C 0.18 2.05 5.80 -5.20 -0.03 2.02 16 9 C -0.21 -2.90 5.25 -104.58 -0.55 -3.45 16 10 C -0.06 -0.78 9.69 -39.61 -0.38 -1.17 16 11 C -0.20 -3.38 9.99 -39.39 -0.39 -3.77 16 12 C 0.17 3.48 6.65 -39.10 -0.26 3.22 16 13 O -0.21 -5.14 8.59 0.06 0.00 -5.14 16 14 C -0.39 -10.38 9.95 30.88 0.31 -10.07 16 15 H 0.11 2.89 5.44 -52.48 -0.29 2.60 16 16 C 0.07 1.74 5.49 -17.52 -0.10 1.64 16 17 N -0.87 -24.03 13.96 55.48 0.77 -23.26 16 18 Si 0.91 20.48 28.62 -169.99 -4.86 15.61 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.26 -5.86 7.11 56.52 0.40 -5.45 16 22 C -0.22 -4.29 9.17 -39.40 -0.36 -4.65 16 23 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 24 C 0.12 1.34 6.91 -82.00 -0.57 0.78 16 25 C -0.11 -1.09 9.11 36.00 0.33 -0.77 16 26 N -0.24 -3.09 11.42 33.81 0.39 -2.70 16 27 N -0.23 -2.70 11.40 33.58 0.38 -2.32 16 28 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.16 0.87 6.63 -52.49 -0.35 0.53 16 32 H 0.40 3.46 6.67 -40.82 -0.27 3.19 16 33 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.14 2.76 5.64 -52.48 -0.30 2.46 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.11 1.19 5.69 -51.93 -0.30 0.90 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -30.13 361.40 -6.66 -36.79 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.85 Total: 4.60 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -3.66 Total: -14.43 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 1.20 Total: -35.88 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.13 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.86 Total: 15.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.13 -6.66 -36.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767399448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.958 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds