Wall clock time and date at job start Tue Mar 31 2020 14:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38551 * 120.01447 * 2 1 4 4 C 1.40068 * 117.81700 * 179.97438 * 3 2 1 5 5 C 1.48139 * 121.14718 * 179.97438 * 4 3 2 6 6 O 1.21519 * 120.00206 * 183.62888 * 5 4 3 7 7 N 1.34773 * 119.99987 * 3.63088 * 5 4 3 8 8 C 1.46498 * 120.00390 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47382 * 180.02562 * 8 7 5 10 10 C 1.38297 * 119.92669 * 269.72821 * 9 8 7 11 11 C 1.38103 * 120.07080 * 179.72474 * 10 9 8 12 12 C 1.38882 * 119.92643 * 0.56884 * 11 10 9 13 13 O 1.35746 * 120.07283 * 179.68211 * 12 11 10 14 14 C 1.34828 * 117.00607 * 185.92914 * 13 12 11 15 15 H 1.08006 * 119.99495 * 354.88850 * 14 13 12 16 16 C 1.38647 * 120.00268 * 174.89460 * 14 13 12 17 17 N 1.31557 * 119.99951 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00143 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46731 * 90.00512 * 18 16 14 20 20 H 1.48493 * 109.47285 * 209.99978 * 18 16 14 21 21 H 1.48502 * 109.47043 * 330.00748 * 18 16 14 22 22 C 1.38884 * 119.85913 * 359.70221 * 12 11 10 23 23 C 1.38093 * 119.93353 * 0.02562 * 22 12 11 24 24 C 1.39770 * 117.70971 * 0.02562 * 4 3 2 25 25 C 1.50696 * 120.17290 * 179.97438 * 24 4 3 26 26 N 1.31893 * 119.65485 * 0.28075 * 24 4 3 27 27 N 1.28286 * 122.32796 * 359.41528 * 26 24 4 28 28 H 1.08999 * 109.47533 * 89.99791 * 1 2 3 29 29 H 1.09000 * 109.47091 * 209.99791 * 1 2 3 30 30 H 1.09003 * 109.46882 * 329.99226 * 1 2 3 31 31 H 1.07997 * 121.08802 * 359.96106 * 3 2 1 32 32 H 0.97003 * 119.99612 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.46656 * 300.00012 * 8 7 5 34 34 H 1.08993 * 109.47184 * 59.99766 * 8 7 5 35 35 H 1.08000 * 119.97006 * 359.97125 * 10 9 8 36 36 H 1.07994 * 120.04219 * 180.26778 * 11 10 9 37 37 H 0.97003 * 120.00046 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.02969 * 179.97438 * 22 12 11 39 39 H 1.08000 * 119.96737 * 179.97438 * 23 22 12 40 40 H 1.09004 * 109.47226 * 83.19675 * 25 24 4 41 41 H 1.09006 * 109.47372 * 203.18964 * 25 24 4 42 42 H 1.08992 * 109.47453 * 323.19355 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 0.0006 5 6 4.4140 2.3835 0.0000 6 8 5.6254 2.3138 -0.0661 7 7 3.8113 3.5868 0.0729 8 6 4.6164 4.8107 0.0718 9 6 3.7080 6.0097 0.1614 10 6 3.2327 6.6031 -0.9938 11 6 2.3955 7.6986 -0.9151 12 6 2.0404 8.2115 0.3257 13 8 1.2228 9.2921 0.4064 14 6 1.0166 9.8137 1.6325 15 1 1.4257 9.3233 2.5036 16 6 0.2794 10.9792 1.7752 17 7 0.0787 11.4883 2.9715 18 14 -0.4276 11.8275 0.2685 19 1 -1.7867 11.2960 -0.0065 20 1 -0.5085 13.2894 0.5159 21 1 0.4503 11.5712 -0.9014 22 6 2.5239 7.6167 1.4839 23 6 3.3562 6.5181 1.3985 24 6 4.2017 -0.1154 0.0005 25 6 5.7037 -0.2379 0.0005 26 7 3.4483 -1.1980 -0.0056 27 7 2.1667 -1.1420 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 1.6781 2.1452 -0.0006 32 1 2.8443 3.6424 0.1261 33 1 5.2916 4.8021 0.9275 34 1 5.1974 4.8625 -0.8489 35 1 3.5134 6.2070 -1.9586 36 1 2.0212 8.1589 -1.8174 37 1 -0.4367 12.3039 3.0713 38 1 2.2499 8.0136 2.4503 39 1 3.7329 6.0554 2.2988 40 1 6.0757 -0.1461 1.0210 41 1 5.9891 -1.2089 -0.4042 42 1 6.1327 0.5526 -0.6151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767399448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:12 Heat of formation + Delta-G solvation = -1.250219 kcal Electronic energy + Delta-G solvation = -25931.055985 eV Core-core repulsion = 22069.627046 eV Total energy + Delta-G solvation = -3861.428939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.48294 -41.05055 -40.47944 -38.63251 -36.15950 -35.30472 -34.71870 -34.41762 -31.94327 -31.76264 -30.58167 -27.93744 -27.81592 -26.64344 -25.51181 -23.77533 -23.68402 -22.10075 -21.84817 -19.86066 -19.24090 -18.87501 -18.79020 -16.96476 -16.86011 -16.77185 -16.65020 -16.35510 -15.97002 -15.73186 -15.66365 -15.48073 -15.02528 -14.59575 -14.49042 -14.34281 -14.29323 -14.22448 -14.05482 -13.54465 -13.41589 -13.29191 -13.13861 -13.00316 -12.58287 -12.47394 -12.33393 -12.09756 -11.93959 -11.48996 -11.38308 -11.30170 -10.92688 -10.61847 -10.53702 -10.17476 -9.83383 -9.10560 -8.50966 -6.24100 -0.82007 -0.25936 0.46547 0.55066 1.33200 1.36195 1.52135 1.60031 1.95820 2.27235 2.43222 2.76639 2.84987 3.00418 3.14212 3.18804 3.28436 3.56355 3.64259 3.85529 4.01462 4.06762 4.14303 4.21222 4.43398 4.43908 4.54230 4.67959 4.72037 4.75228 4.77021 4.81360 4.81942 4.95911 5.09241 5.14423 5.22335 5.27684 5.33556 5.39735 5.53819 5.70182 5.78967 5.88362 6.18820 6.34589 6.83355 6.97661 7.54016 7.56375 8.60200 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.002320 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.191049 B =12067.471026 C =12911.223515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.058 3.942 3 C -0.066 4.066 4 C -0.139 4.139 5 C 0.565 3.435 6 O -0.545 6.545 7 N -0.701 5.701 8 C 0.182 3.818 9 C -0.176 4.176 10 C -0.043 4.043 11 C -0.192 4.192 12 C 0.130 3.870 13 O -0.242 6.242 14 C -0.398 4.398 15 H 0.083 0.917 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.261 1.261 22 C -0.239 4.239 23 C -0.048 4.048 24 C 0.105 3.895 25 C -0.106 4.106 26 N -0.271 5.271 27 N -0.255 5.255 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.189 0.811 32 H 0.412 0.588 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.130 0.870 37 H 0.285 0.715 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 -19.620 -8.554 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.088 4.088 3 C -0.096 4.096 4 C -0.153 4.153 5 C 0.351 3.649 6 O -0.424 6.424 7 N -0.353 5.353 8 C 0.060 3.940 9 C -0.177 4.177 10 C -0.061 4.061 11 C -0.211 4.211 12 C 0.080 3.920 13 O -0.149 6.149 14 C -0.475 4.475 15 H 0.101 0.899 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.196 1.196 21 H -0.185 1.185 22 C -0.258 4.258 23 C -0.067 4.067 24 C -0.041 4.041 25 C -0.163 4.163 26 N -0.112 5.112 27 N -0.097 5.097 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.206 0.794 32 H 0.249 0.751 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.148 0.852 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.152 0.848 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.804 -21.020 -8.641 23.229 hybrid contribution -0.802 2.248 0.372 2.416 sum 4.002 -18.772 -8.269 20.899 Atomic orbital electron populations 1.20872 0.84367 1.05562 1.05137 1.23432 1.00948 0.89355 0.95021 1.22965 0.92567 1.01784 0.92271 1.21108 0.95168 0.95040 1.04013 1.17897 0.87003 0.83121 0.76878 1.90728 1.14376 1.86749 1.50568 1.46037 1.11630 1.04645 1.72984 1.20033 0.91334 0.79142 1.03459 1.19500 1.05055 1.00352 0.92816 1.20967 0.93401 0.92740 0.98986 1.20525 1.04912 1.01168 0.94524 1.19770 0.89557 0.87290 0.95348 1.83519 1.58898 1.40767 1.31708 1.20702 1.35227 1.09045 0.82497 0.89904 1.25282 0.96796 0.96163 1.00586 1.69728 1.40544 1.22429 1.23548 0.85227 0.79234 0.77530 0.78828 1.18980 1.19623 1.18474 1.21269 1.05484 1.01103 0.97954 1.20930 0.94174 0.93416 0.98154 1.23352 1.00255 0.88834 0.91631 1.21018 0.85820 1.04796 1.04708 1.73015 0.99534 1.27213 1.11464 1.72739 1.01811 1.26722 1.08436 0.88179 0.89787 0.87630 0.79366 0.75083 0.90545 0.89579 0.82663 0.85210 0.90567 0.87412 0.84757 0.89406 0.89929 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.19 71.24 0.73 -0.15 16 2 C 0.06 0.92 6.86 42.62 0.29 1.22 16 3 C -0.07 -0.90 9.35 22.79 0.21 -0.69 16 4 C -0.14 -2.57 5.92 -19.83 -0.12 -2.69 16 5 C 0.57 10.93 7.77 86.87 0.68 11.60 16 6 O -0.55 -13.30 13.42 -3.77 -0.05 -13.35 16 7 N -0.70 -11.14 5.51 -469.44 -2.59 -13.73 16 8 C 0.18 3.31 5.80 85.63 0.50 3.81 16 9 C -0.18 -4.03 5.25 -19.84 -0.10 -4.14 16 10 C -0.04 -1.01 9.69 22.25 0.22 -0.79 16 11 C -0.19 -6.17 9.99 22.39 0.22 -5.94 16 12 C 0.13 5.39 6.65 22.58 0.15 5.54 16 13 O -0.24 -12.14 8.59 -22.68 -0.19 -12.33 16 14 C -0.40 -22.14 9.95 67.92 0.68 -21.46 16 15 H 0.08 4.82 5.44 -2.91 -0.02 4.80 16 16 C 0.01 0.58 5.49 84.83 0.47 1.05 16 17 N -0.92 -53.14 13.96 21.61 0.30 -52.84 16 18 Si 0.97 43.17 28.62 68.60 1.96 45.14 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 C -0.24 -9.18 9.17 22.39 0.21 -8.97 16 23 C -0.05 -1.36 9.69 22.25 0.22 -1.15 16 24 C 0.10 2.28 6.91 42.92 0.30 2.57 16 25 C -0.11 -2.00 9.11 71.23 0.65 -1.35 16 26 N -0.27 -6.71 11.42 -46.94 -0.54 -7.24 16 27 N -0.25 -5.84 11.40 -47.68 -0.54 -6.38 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 0.46 8.09 -2.39 -0.02 0.45 16 31 H 0.19 1.17 6.63 -2.91 -0.02 1.15 16 32 H 0.41 4.97 6.67 -92.71 -0.62 4.35 16 33 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.11 4.71 5.64 -2.91 -0.02 4.69 16 39 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.10 2.13 5.69 -2.39 -0.01 2.12 16 Total: -1.00 -69.87 361.40 4.09 -65.78 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.46 Total: 16.49 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 5.28 Total: -21.54 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.36 Total: -80.19 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.25 Total: -25.68 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.96 Total: 45.14 kcal Total: -69.87 4.09 -65.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767399448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.528 kcal (2) G-P(sol) polarization free energy of solvation -69.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds