Wall clock time and date at job start Tue Mar 31 2020 15:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40422 * 126.06755 * 2 1 4 4 N 1.40087 * 125.97518 * 0.04538 * 3 2 1 5 5 C 1.34775 * 119.99600 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00578 * 0.02562 * 5 4 3 7 7 C 1.47510 * 119.99811 * 179.97438 * 5 4 3 8 8 C 1.39686 * 120.19545 * 359.97438 * 7 5 4 9 9 C 1.37829 * 119.91371 * 180.27768 * 8 7 5 10 10 C 1.38576 * 120.32756 * 359.49313 * 9 8 7 11 11 C 1.38025 * 120.40231 * 0.51280 * 10 9 8 12 12 C 1.38834 * 120.07156 * 359.74623 * 11 10 9 13 13 O 1.35530 * 120.15894 * 180.02562 * 12 11 10 14 14 C 1.34810 * 116.99810 * 354.39550 * 13 12 11 15 15 H 1.08002 * 120.00265 * 5.06657 * 14 13 12 16 16 C 1.38697 * 119.99865 * 185.06599 * 14 13 12 17 17 N 1.31521 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00316 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46809 * 90.00220 * 18 16 14 20 20 H 1.48495 * 109.47584 * 210.00025 * 18 16 14 21 21 H 1.48504 * 109.47141 * 330.00476 * 18 16 14 22 22 N 1.31235 * 108.04836 * 180.29999 * 3 2 1 23 23 N 1.40071 * 108.16820 * 359.59320 * 22 3 2 24 24 H 0.97001 * 125.97639 * 180.16702 * 23 22 3 25 25 C 1.34979 * 108.04891 * 0.41578 * 23 22 3 26 26 C 1.50702 * 126.06611 * 179.71360 * 25 23 22 27 27 C 1.53003 * 117.49916 * 8.79190 * 26 25 23 28 28 C 1.52992 * 117.50005 * 300.13333 * 26 25 23 29 29 H 1.08998 * 109.47299 * 89.96748 * 1 2 3 30 30 H 1.08994 * 109.46909 * 209.96902 * 1 2 3 31 31 H 1.08995 * 109.46935 * 329.96747 * 1 2 3 32 32 H 0.96996 * 120.00068 * 359.97438 * 4 3 2 33 33 H 1.07991 * 120.03838 * 0.02562 * 8 7 5 34 34 H 1.08003 * 119.83320 * 179.75236 * 9 8 7 35 35 H 1.08000 * 119.79733 * 180.26179 * 10 9 8 36 36 H 1.07998 * 119.96753 * 179.76789 * 11 10 9 37 37 H 0.96997 * 120.00584 * 179.97438 * 17 16 14 38 38 H 1.08998 * 115.54798 * 154.45455 * 26 25 23 39 39 H 1.09004 * 117.49646 * 0.02562 * 27 26 25 40 40 H 1.09000 * 117.49782 * 145.01581 * 27 26 25 41 41 H 1.09006 * 117.49709 * 214.98037 * 28 26 25 42 42 H 1.08998 * 117.50375 * 359.97373 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3337 1.1351 0.0000 4 7 1.9018 2.4677 0.0009 5 6 2.8045 3.4685 0.0013 6 8 3.9938 3.2148 0.0004 7 6 2.3497 4.8718 0.0017 8 6 0.9846 5.1679 0.0011 9 6 0.5662 6.4812 -0.0044 10 6 1.4934 7.5110 0.0013 11 6 2.8455 7.2336 0.0019 12 6 3.2855 5.9168 0.0020 13 8 4.6127 5.6424 0.0030 14 6 5.4542 6.6892 -0.1134 15 1 5.0652 7.6967 -0.1196 16 6 6.8195 6.4723 -0.2251 17 7 7.2932 5.2454 -0.2181 18 14 7.9855 7.9227 -0.3872 19 1 8.4176 8.3636 0.9634 20 1 9.1742 7.5162 -1.1789 21 1 7.2917 9.0413 -1.0747 22 7 3.5817 0.7291 -0.0065 23 7 3.5854 -0.6716 -0.0014 24 1 4.3718 -1.2394 -0.0021 25 6 2.3031 -1.0932 -0.0009 26 6 1.8407 -2.5275 -0.0022 27 6 2.9007 -3.6116 0.2033 28 6 2.2716 -3.4076 -1.1771 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3633 -0.8902 0.5133 31 1 -0.3633 0.8897 0.5143 32 1 0.9532 2.6701 0.0012 33 1 0.2581 4.3689 0.0007 34 1 -0.4896 6.7087 -0.0089 35 1 1.1560 8.5370 0.0013 36 1 3.5620 8.0417 0.0026 37 1 8.2480 5.0936 -0.2966 38 1 0.8524 -2.7032 0.4224 39 1 3.9324 -3.2873 0.3398 40 1 2.6094 -4.5006 0.7627 41 1 1.5666 -4.1626 -1.5254 42 1 2.8890 -2.9492 -1.9495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783652871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:38 Heat of formation + Delta-G solvation = 76.778704 kcal Electronic energy + Delta-G solvation = -26861.357402 eV Core-core repulsion = 23003.312051 eV Total energy + Delta-G solvation = -3858.045351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34223 -39.55024 -38.13002 -37.11388 -36.33279 -34.22666 -32.34337 -32.15127 -30.88108 -29.43467 -28.91140 -26.54246 -25.41248 -24.02196 -23.11339 -22.74888 -21.75065 -20.76640 -19.82930 -18.96349 -18.03829 -17.71933 -17.13310 -16.23852 -15.80172 -15.59915 -15.08539 -14.64692 -14.33961 -14.26930 -14.06629 -13.96502 -13.71495 -13.25738 -13.23724 -12.78365 -12.72017 -12.55649 -12.48557 -11.94726 -11.73684 -11.70482 -11.41146 -11.20388 -11.12720 -10.90107 -10.81579 -10.79859 -10.45472 -10.35301 -10.20510 -9.55181 -8.87012 -8.84163 -8.34781 -8.26792 -7.90893 -7.30980 -6.42581 -4.03096 1.66798 1.94842 2.31854 2.81213 2.90740 3.12643 3.14001 3.18706 3.57947 3.60763 3.89054 3.94495 4.27981 4.45695 4.61466 4.65913 4.89234 4.98323 5.06785 5.17363 5.25928 5.26238 5.44559 5.46075 5.53860 5.57156 5.69280 5.71227 5.72186 5.82777 5.85525 6.05510 6.10888 6.19075 6.36687 6.55867 6.66452 6.89540 7.04665 7.17345 7.23391 7.28584 7.42802 7.66905 7.68687 7.94364 8.28590 8.95742 9.04781 9.67556 10.70572 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.003325 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.655754 B = 8418.881213 C =10384.799098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.255 4.255 3 C 0.313 3.687 4 N -0.648 5.648 5 C 0.543 3.457 6 O -0.451 6.451 7 C -0.225 4.225 8 C -0.038 4.038 9 C -0.229 4.229 10 C -0.050 4.050 11 C -0.236 4.236 12 C 0.190 3.810 13 O -0.122 6.122 14 C -0.404 4.404 15 H 0.095 0.905 16 C 0.045 3.955 17 N -0.828 5.828 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 N -0.260 5.260 23 N -0.477 5.477 24 H 0.436 0.564 25 C 0.124 3.876 26 C -0.092 4.092 27 C -0.178 4.178 28 C -0.166 4.166 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.410 0.590 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.272 0.728 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.362 -12.395 -0.065 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.268 4.268 3 C 0.055 3.945 4 N -0.301 5.301 5 C 0.332 3.668 6 O -0.318 6.318 7 C -0.230 4.230 8 C -0.057 4.057 9 C -0.249 4.249 10 C -0.068 4.068 11 C -0.255 4.255 12 C 0.130 3.870 13 O -0.020 6.020 14 C -0.480 4.480 15 H 0.112 0.888 16 C -0.164 4.164 17 N -0.459 5.459 18 Si 0.765 3.235 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.190 1.190 22 N -0.090 5.090 23 N -0.186 5.186 24 H 0.280 0.720 25 C -0.005 4.005 26 C -0.112 4.112 27 C -0.215 4.215 28 C -0.203 4.203 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.808 -12.430 -0.070 17.145 hybrid contribution -0.382 0.416 -0.042 0.566 sum -12.190 -12.014 -0.112 17.115 Atomic orbital electron populations 1.19996 0.89285 1.01882 1.01398 1.19308 0.96589 0.89629 1.21305 1.19158 0.91122 0.85487 0.98709 1.43112 1.10573 1.01002 1.75436 1.18485 0.86001 0.84693 0.77646 1.91050 1.14707 1.83007 1.43044 1.18669 0.92587 0.90385 1.21397 1.20760 0.92873 0.96445 0.95619 1.20454 0.98500 0.92479 1.13425 1.20907 0.92697 0.98256 0.94968 1.21152 0.96192 0.96361 1.11801 1.19235 0.85414 0.91582 0.90816 1.84173 1.09945 1.34708 1.73187 1.21500 0.87284 0.86343 1.52842 0.88795 1.25405 0.96709 0.98084 0.96165 1.70141 1.14283 1.19538 1.41967 0.85726 0.79358 0.79660 0.78749 1.19735 1.20132 1.19033 1.78285 1.16540 0.86391 1.27754 1.46148 1.05976 1.05651 1.60845 0.72028 1.19686 0.85298 0.93815 1.01666 1.20591 1.00153 0.85647 1.04765 1.23031 0.98002 1.00273 1.00199 1.23082 1.03698 1.01921 0.91623 0.92150 0.92040 0.92265 0.75263 0.87023 0.87133 0.87104 0.84996 0.91825 0.85275 0.88890 0.87692 0.87781 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.00 36.01 0.36 -0.31 16 2 C -0.25 -3.60 6.12 -104.87 -0.64 -4.24 16 3 C 0.31 5.82 7.78 -154.44 -1.20 4.62 16 4 N -0.65 -11.83 5.40 -12.08 -0.07 -11.90 16 5 C 0.54 12.69 7.73 -12.48 -0.10 12.59 16 6 O -0.45 -13.07 13.88 -16.59 -0.23 -13.30 16 7 C -0.23 -4.99 5.89 -104.81 -0.62 -5.61 16 8 C -0.04 -0.65 9.54 -39.19 -0.37 -1.03 16 9 C -0.23 -3.72 10.02 -39.61 -0.40 -4.12 16 10 C -0.05 -0.87 10.03 -39.53 -0.40 -1.27 16 11 C -0.24 -5.08 9.16 -39.44 -0.36 -5.44 16 12 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 13 O -0.12 -3.67 7.84 -21.07 -0.17 -3.84 16 14 C -0.40 -11.58 9.49 30.90 0.29 -11.28 16 15 H 0.09 2.43 5.21 -52.49 -0.27 2.15 16 16 C 0.04 1.26 5.49 -17.52 -0.10 1.17 16 17 N -0.83 -25.49 13.67 55.48 0.76 -24.73 16 18 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 N -0.26 -5.44 10.92 31.43 0.34 -5.10 16 23 N -0.48 -7.26 7.23 33.47 0.24 -7.01 16 24 H 0.44 5.37 7.96 -182.62 -1.45 3.92 16 25 C 0.12 1.60 6.71 -82.28 -0.55 1.05 16 26 C -0.09 -0.79 5.94 -91.77 -0.55 -1.33 16 27 C -0.18 -1.24 10.14 -26.69 -0.27 -1.51 16 28 C -0.17 -1.19 10.24 -26.70 -0.27 -1.46 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.49 7.32 -51.93 -0.38 0.11 16 31 H 0.06 0.54 7.70 -51.93 -0.40 0.14 16 32 H 0.41 5.70 6.24 -40.82 -0.25 5.45 16 33 H 0.11 1.44 6.40 -52.49 -0.34 1.10 16 34 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 37 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.13 0.89 7.41 -51.93 -0.38 0.51 16 39 H 0.09 0.66 7.16 -51.93 -0.37 0.29 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -38.19 358.77 -9.98 -48.17 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.82 Total: 10.18 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -5.43 Total: -13.66 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 1.28 Total: -48.75 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.40 Total: -17.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.19 -9.98 -48.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783652871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.947 kcal (2) G-P(sol) polarization free energy of solvation -38.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds