Wall clock time and date at job start Tue Mar 31 2020 15:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40422 * 126.06755 * 2 1 4 4 N 1.40087 * 125.97518 * 0.04538 * 3 2 1 5 5 C 1.34775 * 119.99600 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00578 * 0.02562 * 5 4 3 7 7 C 1.47510 * 119.99811 * 179.97438 * 5 4 3 8 8 C 1.39686 * 120.19545 * 359.97438 * 7 5 4 9 9 C 1.37829 * 119.91371 * 180.27768 * 8 7 5 10 10 C 1.38576 * 120.32756 * 359.49313 * 9 8 7 11 11 C 1.38025 * 120.40231 * 0.51280 * 10 9 8 12 12 C 1.38834 * 120.07156 * 359.74623 * 11 10 9 13 13 O 1.35530 * 120.15894 * 180.02562 * 12 11 10 14 14 C 1.34810 * 116.99810 * 354.39550 * 13 12 11 15 15 H 1.08002 * 120.00265 * 5.06657 * 14 13 12 16 16 C 1.38697 * 119.99865 * 185.06599 * 14 13 12 17 17 N 1.31521 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00316 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46809 * 90.00220 * 18 16 14 20 20 H 1.48495 * 109.47584 * 210.00025 * 18 16 14 21 21 H 1.48504 * 109.47141 * 330.00476 * 18 16 14 22 22 N 1.31235 * 108.04836 * 180.29999 * 3 2 1 23 23 N 1.40071 * 108.16820 * 359.59320 * 22 3 2 24 24 H 0.97001 * 125.97639 * 180.16702 * 23 22 3 25 25 C 1.34979 * 108.04891 * 0.41578 * 23 22 3 26 26 C 1.50702 * 126.06611 * 179.71360 * 25 23 22 27 27 C 1.53003 * 117.49916 * 8.79190 * 26 25 23 28 28 C 1.52992 * 117.50005 * 300.13333 * 26 25 23 29 29 H 1.08998 * 109.47299 * 89.96748 * 1 2 3 30 30 H 1.08994 * 109.46909 * 209.96902 * 1 2 3 31 31 H 1.08995 * 109.46935 * 329.96747 * 1 2 3 32 32 H 0.96996 * 120.00068 * 359.97438 * 4 3 2 33 33 H 1.07991 * 120.03838 * 0.02562 * 8 7 5 34 34 H 1.08003 * 119.83320 * 179.75236 * 9 8 7 35 35 H 1.08000 * 119.79733 * 180.26179 * 10 9 8 36 36 H 1.07998 * 119.96753 * 179.76789 * 11 10 9 37 37 H 0.96997 * 120.00584 * 179.97438 * 17 16 14 38 38 H 1.08998 * 115.54798 * 154.45455 * 26 25 23 39 39 H 1.09004 * 117.49646 * 0.02562 * 27 26 25 40 40 H 1.09000 * 117.49782 * 145.01581 * 27 26 25 41 41 H 1.09006 * 117.49709 * 214.98037 * 28 26 25 42 42 H 1.08998 * 117.50375 * 359.97373 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3337 1.1351 0.0000 4 7 1.9018 2.4677 0.0009 5 6 2.8045 3.4685 0.0013 6 8 3.9938 3.2148 0.0004 7 6 2.3497 4.8718 0.0017 8 6 0.9846 5.1679 0.0011 9 6 0.5662 6.4812 -0.0044 10 6 1.4934 7.5110 0.0013 11 6 2.8455 7.2336 0.0019 12 6 3.2855 5.9168 0.0020 13 8 4.6127 5.6424 0.0030 14 6 5.4542 6.6892 -0.1134 15 1 5.0652 7.6967 -0.1196 16 6 6.8195 6.4723 -0.2251 17 7 7.2932 5.2454 -0.2181 18 14 7.9855 7.9227 -0.3872 19 1 8.4176 8.3636 0.9634 20 1 9.1742 7.5162 -1.1789 21 1 7.2917 9.0413 -1.0747 22 7 3.5817 0.7291 -0.0065 23 7 3.5854 -0.6716 -0.0014 24 1 4.3718 -1.2394 -0.0021 25 6 2.3031 -1.0932 -0.0009 26 6 1.8407 -2.5275 -0.0022 27 6 2.9007 -3.6116 0.2033 28 6 2.2716 -3.4076 -1.1771 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3633 -0.8902 0.5133 31 1 -0.3633 0.8897 0.5143 32 1 0.9532 2.6701 0.0012 33 1 0.2581 4.3689 0.0007 34 1 -0.4896 6.7087 -0.0089 35 1 1.1560 8.5370 0.0013 36 1 3.5620 8.0417 0.0026 37 1 8.2480 5.0936 -0.2966 38 1 0.8524 -2.7032 0.4224 39 1 3.9324 -3.2873 0.3398 40 1 2.6094 -4.5006 0.7627 41 1 1.5666 -4.1626 -1.5254 42 1 2.8890 -2.9492 -1.9495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783652871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:37 Heat of formation + Delta-G solvation = 50.090299 kcal Electronic energy + Delta-G solvation = -26862.514698 eV Core-core repulsion = 23003.312051 eV Total energy + Delta-G solvation = -3859.202647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.57073 -41.24510 -39.82230 -38.08162 -37.89988 -35.81562 -34.34802 -33.26221 -32.36302 -30.82970 -30.57145 -27.48630 -27.40025 -25.52517 -24.22230 -23.38335 -23.25633 -22.21113 -21.26071 -20.25044 -19.84426 -19.28052 -18.29782 -17.76313 -17.26348 -16.63537 -16.44933 -16.31145 -16.03999 -15.83255 -15.69789 -15.34767 -15.04340 -14.81019 -14.47027 -14.27920 -14.09321 -13.56543 -13.53880 -13.36636 -13.04528 -12.71608 -12.56661 -12.51095 -12.47451 -12.36106 -12.30343 -12.14268 -11.62479 -11.50480 -11.42705 -11.32501 -10.85292 -10.62066 -9.90920 -9.60224 -9.15455 -9.03145 -8.45736 -6.17685 0.05282 0.71844 0.85956 1.29981 1.42246 1.49844 1.53027 1.54428 2.14118 2.28350 2.33025 2.86940 2.95337 3.21207 3.43175 3.48452 3.71161 3.80236 4.01998 4.03505 4.07578 4.20435 4.29814 4.37712 4.49962 4.63500 4.65958 4.74023 4.88105 4.96190 5.00361 5.00904 5.05482 5.09483 5.12616 5.18801 5.27264 5.37948 5.46404 5.58660 5.68913 5.82316 5.92946 6.14496 6.19617 6.46103 6.90147 6.93180 7.39106 7.78384 8.74479 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.003325 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.655754 B = 8418.881213 C =10384.799098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.259 4.259 3 C 0.286 3.714 4 N -0.626 5.626 5 C 0.537 3.463 6 O -0.522 6.522 7 C -0.243 4.243 8 C -0.029 4.029 9 C -0.196 4.196 10 C -0.036 4.036 11 C -0.256 4.256 12 C 0.150 3.850 13 O -0.191 6.191 14 C -0.427 4.427 15 H 0.110 0.890 16 C -0.025 4.025 17 N -0.906 5.906 18 Si 1.024 2.976 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.245 1.245 22 N -0.340 5.340 23 N -0.475 5.475 24 H 0.442 0.558 25 C 0.136 3.864 26 C -0.102 4.102 27 C -0.172 4.172 28 C -0.157 4.157 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.431 0.569 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.270 0.730 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.888 -12.403 -0.057 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.272 4.272 3 C 0.029 3.971 4 N -0.280 5.280 5 C 0.327 3.673 6 O -0.394 6.394 7 C -0.248 4.248 8 C -0.047 4.047 9 C -0.214 4.214 10 C -0.054 4.054 11 C -0.275 4.275 12 C 0.094 3.906 13 O -0.093 6.093 14 C -0.503 4.503 15 H 0.127 0.873 16 C -0.224 4.224 17 N -0.541 5.541 18 Si 0.842 3.158 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.168 1.168 22 N -0.170 5.170 23 N -0.186 5.186 24 H 0.288 0.712 25 C 0.007 3.993 26 C -0.122 4.122 27 C -0.210 4.210 28 C -0.194 4.194 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.272 0.728 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.175 0.825 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.175 0.825 39 H 0.103 0.897 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.482 -12.433 -0.059 21.452 hybrid contribution 0.817 0.291 -0.034 0.868 sum -16.665 -12.142 -0.093 20.619 Atomic orbital electron populations 1.20144 0.85790 1.03708 1.02742 1.19807 0.98790 0.87797 1.20803 1.19590 0.91737 0.86198 0.99571 1.42714 1.10796 1.00491 1.74033 1.18897 0.85682 0.86166 0.76551 1.91029 1.17846 1.84166 1.46381 1.19100 0.94637 0.89283 1.21767 1.21340 0.91019 0.99024 0.93333 1.21208 1.01078 0.91125 1.08029 1.21481 0.90733 1.01293 0.91936 1.21302 0.98468 0.94616 1.13151 1.20077 0.84844 0.94200 0.91431 1.84187 1.12024 1.35628 1.77469 1.22064 0.88052 0.87077 1.53093 0.87322 1.26824 0.98544 1.01436 0.95557 1.70357 1.14357 1.22795 1.46638 0.84544 0.76377 0.75668 0.79233 1.18589 1.19871 1.16833 1.78143 1.19114 0.89528 1.30180 1.46090 1.07616 1.04080 1.60836 0.71212 1.20472 0.83836 0.96089 0.98923 1.20801 1.01734 0.82982 1.06642 1.23167 0.97255 1.00211 1.00326 1.23151 1.03688 1.01525 0.91076 0.90909 0.89408 0.91304 0.72761 0.81974 0.81318 0.82536 0.85771 0.92148 0.82539 0.89722 0.85290 0.85156 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.00 71.24 0.71 -0.36 16 2 C -0.26 -7.04 6.12 -20.03 -0.12 -7.17 16 3 C 0.29 10.99 7.78 133.35 1.04 12.03 16 4 N -0.63 -23.22 5.40 -310.40 -1.68 -24.90 16 5 C 0.54 26.60 7.73 86.69 0.67 27.27 16 6 O -0.52 -33.34 13.88 16.84 0.23 -33.11 16 7 C -0.24 -10.95 5.89 -19.99 -0.12 -11.06 16 8 C -0.03 -0.87 9.54 22.52 0.21 -0.66 16 9 C -0.20 -5.12 10.02 22.25 0.22 -4.90 16 10 C -0.04 -1.12 10.03 22.30 0.22 -0.90 16 11 C -0.26 -11.05 9.16 22.36 0.20 -10.85 16 12 C 0.15 7.93 6.66 22.91 0.15 8.08 16 13 O -0.19 -12.54 7.84 0.77 0.01 -12.53 16 14 C -0.43 -26.52 9.49 67.93 0.64 -25.87 16 15 H 0.11 6.00 5.21 -2.91 -0.02 5.99 16 16 C -0.02 -1.50 5.49 84.85 0.47 -1.04 16 17 N -0.91 -61.50 13.67 21.62 0.30 -61.21 16 18 Si 1.02 45.52 29.55 68.60 2.03 47.55 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 22 N -0.34 -15.33 10.92 -54.48 -0.59 -15.93 16 23 N -0.48 -15.29 7.23 -48.03 -0.35 -15.64 16 24 H 0.44 11.89 7.96 -213.34 -1.70 10.19 16 25 C 0.14 3.40 6.71 41.38 0.28 3.68 16 26 C -0.10 -1.47 5.94 -11.54 -0.07 -1.54 16 27 C -0.17 -2.00 10.14 30.62 0.31 -1.69 16 28 C -0.16 -1.85 10.24 30.61 0.31 -1.54 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.98 7.32 -2.39 -0.02 0.96 16 31 H 0.07 0.98 7.70 -2.39 -0.02 0.96 16 32 H 0.43 11.14 6.24 -92.71 -0.58 10.56 16 33 H 0.16 3.21 6.40 -2.92 -0.02 3.19 16 34 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 35 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 37 H 0.27 16.80 8.31 -92.71 -0.77 16.03 16 38 H 0.16 1.45 7.41 -2.39 -0.02 1.43 16 39 H 0.08 1.13 7.16 -2.39 -0.02 1.12 16 40 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -100.71 358.77 3.92 -96.80 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -1.17 Total: 35.47 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.14 Total: -16.51 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -2.32 Total: -117.67 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: 0.24 Total: -45.64 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -100.71 3.92 -96.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783652871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.886 kcal (2) G-P(sol) polarization free energy of solvation -100.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds