Wall clock time and date at job start Tue Mar 31 2020 14:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38836 * 120.35604 * 2 1 4 4 C 1.38375 * 118.48813 * 180.28789 * 3 2 1 5 5 C 1.38937 * 119.10771 * 359.72902 * 4 3 2 6 6 O 1.35661 * 119.68316 * 179.97438 * 5 4 3 7 7 C 1.35974 * 117.99933 * 175.03479 * 6 5 4 8 8 C 1.38734 * 119.98608 * 254.84737 * 7 6 5 9 9 C 1.38083 * 120.01151 * 179.72538 * 8 7 6 10 10 C 1.38847 * 119.98700 * 0.54898 * 9 8 7 11 11 N 1.40128 * 120.01302 * 179.70714 * 10 9 8 12 12 C 1.34782 * 119.99706 * 215.12128 * 11 10 9 13 13 O 1.21598 * 120.00122 * 355.40828 * 12 11 10 14 14 N 1.34775 * 119.99900 * 175.40873 * 12 11 10 15 15 C 1.46502 * 120.00070 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47252 * 180.02562 * 15 14 12 17 17 H 1.08006 * 119.99885 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99931 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99727 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00037 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46823 * 90.00098 * 20 18 16 22 22 H 1.48495 * 109.47179 * 210.00067 * 20 18 16 23 23 H 1.48494 * 109.47172 * 330.00708 * 20 18 16 24 24 C 1.38843 * 119.97199 * 359.72521 * 10 9 8 25 25 C 1.38084 * 119.98826 * 359.97438 * 24 10 9 26 26 N 1.32270 * 120.62759 * 0.02562 * 5 4 3 27 27 C 1.31954 * 121.64809 * 359.97438 * 26 5 4 28 28 H 1.08999 * 109.47012 * 270.24629 * 1 2 3 29 29 H 1.09000 * 109.47020 * 30.24954 * 1 2 3 30 30 H 1.09001 * 109.46851 * 150.24551 * 1 2 3 31 31 H 1.08002 * 120.75523 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.44135 * 179.75407 * 4 3 2 33 33 H 1.08001 * 119.99774 * 359.97438 * 8 7 6 34 34 H 1.08005 * 120.00723 * 180.29582 * 9 8 7 35 35 H 0.96993 * 120.00436 * 35.12049 * 11 10 9 36 36 H 0.97001 * 119.99916 * 359.97438 * 14 12 11 37 37 H 1.08998 * 109.47156 * 300.00132 * 15 14 12 38 38 H 1.09003 * 109.46728 * 60.00346 * 15 14 12 39 39 H 0.96997 * 119.99628 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.00790 * 179.97438 * 24 10 9 41 41 H 1.08005 * 119.99251 * 179.97438 * 25 24 10 42 42 H 1.08000 * 119.58049 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1980 0.0000 4 6 3.5916 1.1529 -0.0061 5 6 4.2276 -0.0824 -0.0063 6 8 5.5829 -0.1402 -0.0127 7 6 6.1702 -1.3621 0.0912 8 6 6.7629 -1.7473 1.2850 9 6 7.3545 -2.9903 1.3929 10 6 7.3661 -3.8503 0.3029 11 7 7.9717 -5.1094 0.4099 12 6 8.6176 -5.6387 -0.6481 13 8 8.6039 -5.0629 -1.7190 14 7 9.2785 -6.8061 -0.5190 15 6 9.9801 -7.3817 -1.6691 16 6 10.6318 -8.6781 -1.2626 17 1 10.5337 -9.0373 -0.2488 18 6 11.3544 -9.4054 -2.1847 19 7 11.9236 -10.5366 -1.8298 20 14 11.5247 -8.7839 -3.9380 21 1 12.7299 -7.9226 -4.0430 22 1 11.6596 -9.9387 -4.8617 23 1 10.3201 -7.9960 -4.3031 24 6 6.7778 -3.4620 -0.8933 25 6 6.1811 -2.2212 -0.9981 26 7 3.5241 -1.2024 -0.0012 27 6 2.2046 -1.1913 0.0047 28 1 -0.3633 0.0044 1.0276 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3633 -0.8922 -0.5100 31 1 1.6869 2.1436 0.0004 32 1 4.1689 2.0657 -0.0103 33 1 6.7581 -1.0764 2.1313 34 1 7.8117 -3.2919 2.3238 35 1 7.9261 -5.6001 1.2454 36 1 9.2897 -7.2652 0.3354 37 1 9.2677 -7.5698 -2.4724 38 1 10.7427 -6.6842 -2.0157 39 1 12.4316 -11.0483 -2.4786 40 1 6.7869 -4.1303 -1.7416 41 1 5.7238 -1.9189 -1.9287 42 1 1.6636 -2.1260 0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785816680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:09 Heat of formation + Delta-G solvation = 8.871470 kcal Electronic energy + Delta-G solvation = -25665.799559 eV Core-core repulsion = 21804.809530 eV Total energy + Delta-G solvation = -3860.990030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26438 -40.26215 -39.22717 -37.58472 -34.54741 -34.17681 -33.52697 -32.41485 -32.12664 -30.99846 -29.22360 -27.66373 -26.92049 -24.38374 -23.13761 -23.03016 -22.30194 -21.51483 -20.42341 -19.09017 -18.45669 -17.66320 -17.47688 -16.49942 -16.08722 -15.65313 -15.47487 -15.09429 -14.83691 -14.73087 -14.55932 -14.22379 -14.11413 -13.65058 -13.51728 -13.43141 -13.22152 -12.92216 -12.81852 -12.61363 -12.40180 -12.21114 -12.15919 -12.03546 -11.08748 -10.99950 -10.80926 -10.21091 -10.11538 -9.99532 -9.87412 -9.64618 -9.50466 -8.94064 -8.81510 -8.70381 -8.33104 -7.83521 -6.23860 -4.26506 0.79204 0.90522 1.10652 1.39435 2.85263 3.00977 3.26289 3.33554 3.41116 3.41682 3.54550 3.92935 4.03672 4.31553 4.40187 4.54542 4.59880 4.72285 4.77542 4.90064 4.92807 5.10550 5.11618 5.17053 5.30432 5.39942 5.41769 5.51741 5.58294 5.59041 5.87735 5.90897 5.98857 6.23001 6.33854 6.42156 6.53817 6.67988 6.95566 7.04607 7.12992 7.27199 7.32491 7.44301 7.63197 8.20820 8.54054 8.74292 9.00390 9.35900 10.87938 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026694 B = 0.001991 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.677429 B =14059.418992 C =14303.163198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.179 4.179 3 C -0.045 4.045 4 C -0.184 4.184 5 C 0.312 3.688 6 O -0.246 6.246 7 C 0.062 3.938 8 C -0.097 4.097 9 C -0.142 4.142 10 C 0.184 3.816 11 N -0.694 5.694 12 C 0.693 3.307 13 O -0.585 6.585 14 N -0.714 5.714 15 C 0.237 3.763 16 C -0.545 4.545 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.109 4.109 25 C -0.089 4.089 26 N -0.520 5.520 27 C 0.140 3.860 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.406 0.594 36 H 0.395 0.605 37 H 0.026 0.974 38 H 0.021 0.979 39 H 0.268 0.732 40 H 0.149 0.851 41 H 0.125 0.875 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.445 22.783 8.007 32.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C -0.070 4.070 4 C -0.205 4.205 5 C 0.135 3.865 6 O -0.152 6.152 7 C 0.020 3.980 8 C -0.116 4.116 9 C -0.164 4.164 10 C 0.088 3.912 11 N -0.341 5.341 12 C 0.393 3.607 13 O -0.463 6.463 14 N -0.366 5.366 15 C 0.115 3.885 16 C -0.583 4.583 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.129 4.129 25 C -0.108 4.108 26 N -0.241 5.241 27 C -0.016 4.016 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.241 0.759 36 H 0.228 0.772 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.166 0.834 41 H 0.143 0.857 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.583 22.433 6.889 31.215 hybrid contribution -0.145 0.333 -0.071 0.370 sum -20.728 22.766 6.818 31.535 Atomic orbital electron populations 1.20634 0.89989 1.03051 1.02438 1.20810 0.97782 0.93998 1.05530 1.21292 0.92677 0.98448 0.94587 1.21061 0.94730 0.96760 1.07906 1.20090 0.83921 0.89950 0.92529 1.84654 1.15174 1.28906 1.86472 1.18390 0.99923 0.85458 0.94277 1.20770 0.99389 0.95619 0.95855 1.20665 1.03718 0.92916 0.99054 1.17608 0.93624 0.85102 0.94879 1.42795 1.56949 1.18614 1.15786 1.16118 0.79017 0.81979 0.83563 1.90876 1.66899 1.62492 1.26025 1.45447 1.53807 1.21164 1.16177 1.19437 0.91579 0.93510 0.84002 1.21065 1.33367 1.04239 0.99612 0.90220 1.24778 0.94385 0.94461 0.98946 1.69876 1.33452 1.14050 1.35463 0.86811 0.79760 0.78826 0.84274 1.19807 1.20875 1.18432 1.21270 0.96343 0.96830 0.98482 1.21118 0.98579 0.93171 0.97946 1.67420 1.09427 1.29855 1.17437 1.22385 0.88111 0.97830 0.93313 0.91144 0.91464 0.91241 0.84178 0.83978 0.85336 0.85054 0.75883 0.77158 0.95627 0.96082 0.92207 0.83357 0.85750 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.44 10.03 36.01 0.36 -0.08 16 2 C -0.18 -1.28 5.90 -104.47 -0.62 -1.89 16 3 C -0.04 -0.31 9.85 -39.31 -0.39 -0.69 16 4 C -0.18 -1.61 10.04 -39.27 -0.39 -2.01 16 5 C 0.31 3.65 7.39 -17.10 -0.13 3.52 16 6 O -0.25 -3.20 9.96 -3.11 -0.03 -3.23 16 7 C 0.06 0.85 5.21 -39.21 -0.20 0.64 16 8 C -0.10 -1.18 9.98 -39.45 -0.39 -1.57 16 9 C -0.14 -1.72 9.96 -39.41 -0.39 -2.12 16 10 C 0.18 2.70 6.30 -83.61 -0.53 2.17 16 11 N -0.69 -10.16 5.35 -14.19 -0.08 -10.23 16 12 C 0.69 13.36 8.41 -86.92 -0.73 12.63 16 13 O -0.58 -13.33 13.78 5.28 0.07 -13.26 16 14 N -0.71 -14.26 5.55 -66.41 -0.37 -14.62 16 15 C 0.24 5.77 4.50 -5.20 -0.02 5.75 16 16 C -0.54 -14.78 9.83 -34.44 -0.34 -15.12 16 17 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 20 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.92 16 24 C -0.11 -1.72 8.69 -39.41 -0.34 -2.06 16 25 C -0.09 -1.28 9.44 -39.45 -0.37 -1.66 16 26 N -0.52 -6.22 8.99 -13.32 -0.12 -6.34 16 27 C 0.14 1.27 10.85 -17.57 -0.19 1.08 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.22 8.10 -51.93 -0.42 -0.20 16 30 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 35 H 0.41 4.48 8.84 -40.82 -0.36 4.12 16 36 H 0.39 6.80 8.34 -40.82 -0.34 6.46 16 37 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 38 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.15 2.64 6.22 -52.49 -0.33 2.32 16 41 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -33.90 364.67 -8.87 -42.77 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.17 Total: 7.55 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -4.78 Total: 0.69 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.21 Total: -56.68 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.04 Total: -16.49 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.90 -8.87 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785816680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.644 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds