Wall clock time and date at job start Tue Mar 31 2020 14:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38836 * 120.35604 * 2 1 4 4 C 1.38375 * 118.48813 * 180.28789 * 3 2 1 5 5 C 1.38937 * 119.10771 * 359.72902 * 4 3 2 6 6 O 1.35661 * 119.68316 * 179.97438 * 5 4 3 7 7 C 1.35974 * 117.99933 * 175.03479 * 6 5 4 8 8 C 1.38734 * 119.98608 * 254.84737 * 7 6 5 9 9 C 1.38083 * 120.01151 * 179.72538 * 8 7 6 10 10 C 1.38847 * 119.98700 * 0.54898 * 9 8 7 11 11 N 1.40128 * 120.01302 * 179.70714 * 10 9 8 12 12 C 1.34782 * 119.99706 * 215.12128 * 11 10 9 13 13 O 1.21598 * 120.00122 * 355.40828 * 12 11 10 14 14 N 1.34775 * 119.99900 * 175.40873 * 12 11 10 15 15 C 1.46502 * 120.00070 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47252 * 180.02562 * 15 14 12 17 17 H 1.08006 * 119.99885 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99931 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99727 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00037 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46823 * 90.00098 * 20 18 16 22 22 H 1.48495 * 109.47179 * 210.00067 * 20 18 16 23 23 H 1.48494 * 109.47172 * 330.00708 * 20 18 16 24 24 C 1.38843 * 119.97199 * 359.72521 * 10 9 8 25 25 C 1.38084 * 119.98826 * 359.97438 * 24 10 9 26 26 N 1.32270 * 120.62759 * 0.02562 * 5 4 3 27 27 C 1.31954 * 121.64809 * 359.97438 * 26 5 4 28 28 H 1.08999 * 109.47012 * 270.24629 * 1 2 3 29 29 H 1.09000 * 109.47020 * 30.24954 * 1 2 3 30 30 H 1.09001 * 109.46851 * 150.24551 * 1 2 3 31 31 H 1.08002 * 120.75523 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.44135 * 179.75407 * 4 3 2 33 33 H 1.08001 * 119.99774 * 359.97438 * 8 7 6 34 34 H 1.08005 * 120.00723 * 180.29582 * 9 8 7 35 35 H 0.96993 * 120.00436 * 35.12049 * 11 10 9 36 36 H 0.97001 * 119.99916 * 359.97438 * 14 12 11 37 37 H 1.08998 * 109.47156 * 300.00132 * 15 14 12 38 38 H 1.09003 * 109.46728 * 60.00346 * 15 14 12 39 39 H 0.96997 * 119.99628 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.00790 * 179.97438 * 24 10 9 41 41 H 1.08005 * 119.99251 * 179.97438 * 25 24 10 42 42 H 1.08000 * 119.58049 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1980 0.0000 4 6 3.5916 1.1529 -0.0061 5 6 4.2276 -0.0824 -0.0063 6 8 5.5829 -0.1402 -0.0127 7 6 6.1702 -1.3621 0.0912 8 6 6.7629 -1.7473 1.2850 9 6 7.3545 -2.9903 1.3929 10 6 7.3661 -3.8503 0.3029 11 7 7.9717 -5.1094 0.4099 12 6 8.6176 -5.6387 -0.6481 13 8 8.6039 -5.0629 -1.7190 14 7 9.2785 -6.8061 -0.5190 15 6 9.9801 -7.3817 -1.6691 16 6 10.6318 -8.6781 -1.2626 17 1 10.5337 -9.0373 -0.2488 18 6 11.3544 -9.4054 -2.1847 19 7 11.9236 -10.5366 -1.8298 20 14 11.5247 -8.7839 -3.9380 21 1 12.7299 -7.9226 -4.0430 22 1 11.6596 -9.9387 -4.8617 23 1 10.3201 -7.9960 -4.3031 24 6 6.7778 -3.4620 -0.8933 25 6 6.1811 -2.2212 -0.9981 26 7 3.5241 -1.2024 -0.0012 27 6 2.2046 -1.1913 0.0047 28 1 -0.3633 0.0044 1.0276 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3633 -0.8922 -0.5100 31 1 1.6869 2.1436 0.0004 32 1 4.1689 2.0657 -0.0103 33 1 6.7581 -1.0764 2.1313 34 1 7.8117 -3.2919 2.3238 35 1 7.9261 -5.6001 1.2454 36 1 9.2897 -7.2652 0.3354 37 1 9.2677 -7.5698 -2.4724 38 1 10.7427 -6.6842 -2.0157 39 1 12.4316 -11.0483 -2.4786 40 1 6.7869 -4.1303 -1.7416 41 1 5.7238 -1.9189 -1.9287 42 1 1.6636 -2.1260 0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785816680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:08 Heat of formation + Delta-G solvation = -15.100288 kcal Electronic energy + Delta-G solvation = -25666.839053 eV Core-core repulsion = 21804.809530 eV Total energy + Delta-G solvation = -3862.029523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12266 -41.52361 -40.21215 -38.68875 -36.26223 -35.56021 -34.41772 -34.14856 -32.80710 -32.06383 -30.62357 -29.17383 -27.62466 -25.26154 -24.42834 -24.10001 -23.43746 -22.63519 -21.91472 -20.05166 -19.94816 -18.87701 -18.36612 -18.32113 -17.19182 -16.71767 -16.61675 -16.31056 -16.08112 -15.91718 -15.54897 -15.30413 -15.21508 -15.02029 -14.58293 -14.42037 -14.39327 -14.15298 -14.06417 -13.74985 -13.54533 -13.16000 -13.04710 -12.95982 -12.72151 -12.63008 -12.09172 -11.93588 -11.66815 -11.44450 -11.11373 -10.92294 -10.83597 -10.57194 -10.05266 -10.00577 -9.41182 -9.00961 -8.40249 -6.47185 -0.00175 0.14615 0.29996 0.34135 1.33291 1.35474 1.48248 1.63663 1.87835 2.14688 2.28194 2.73439 2.85421 2.95509 3.30411 3.34350 3.83989 3.88645 3.92423 4.02518 4.03677 4.16882 4.30035 4.42355 4.49412 4.63466 4.72647 4.84865 4.87713 4.89533 4.96022 5.02756 5.03079 5.20023 5.21804 5.28658 5.34599 5.36312 5.37145 5.47978 5.60718 5.85763 5.92118 6.21236 6.43368 6.54661 6.89884 7.05202 7.18607 7.50259 8.74270 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026694 B = 0.001991 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.677429 B =14059.418992 C =14303.163198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.168 4.168 3 C -0.042 4.042 4 C -0.184 4.184 5 C 0.278 3.722 6 O -0.258 6.258 7 C 0.065 3.935 8 C -0.097 4.097 9 C -0.123 4.123 10 C 0.161 3.839 11 N -0.672 5.672 12 C 0.695 3.305 13 O -0.622 6.622 14 N -0.712 5.712 15 C 0.250 3.750 16 C -0.546 4.546 17 H 0.062 0.938 18 C 0.028 3.972 19 N -0.930 5.930 20 Si 0.936 3.064 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.126 4.126 25 C -0.100 4.100 26 N -0.550 5.550 27 C 0.118 3.882 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.176 0.824 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.425 0.575 36 H 0.409 0.591 37 H 0.014 0.986 38 H 0.012 0.988 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.181 25.126 9.166 35.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.170 4.170 3 C -0.067 4.067 4 C -0.204 4.204 5 C 0.102 3.898 6 O -0.165 6.165 7 C 0.022 3.978 8 C -0.115 4.115 9 C -0.144 4.144 10 C 0.066 3.934 11 N -0.322 5.322 12 C 0.395 3.605 13 O -0.503 6.503 14 N -0.365 5.365 15 C 0.126 3.874 16 C -0.584 4.584 17 H 0.080 0.920 18 C -0.173 4.173 19 N -0.568 5.568 20 Si 0.760 3.240 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.185 1.185 24 C -0.147 4.147 25 C -0.119 4.119 26 N -0.272 5.272 27 C -0.038 4.038 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.193 0.807 32 H 0.176 0.824 33 H 0.174 0.826 34 H 0.184 0.816 35 H 0.264 0.736 36 H 0.244 0.756 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -22.364 24.788 8.113 34.357 hybrid contribution 0.204 -0.277 -0.344 0.486 sum -22.159 24.511 7.769 33.944 Atomic orbital electron populations 1.20713 0.87662 1.04137 1.03443 1.21178 0.99379 0.93375 1.03108 1.21746 0.91961 0.99865 0.93121 1.21364 0.95754 0.96237 1.07043 1.20371 0.83280 0.91086 0.95063 1.84599 1.16376 1.28287 1.87214 1.18561 0.99447 0.85461 0.94346 1.21119 0.98351 0.95991 0.96078 1.20969 1.02145 0.92019 0.99229 1.17769 0.94701 0.85478 0.95484 1.42425 1.55721 1.18724 1.15282 1.16163 0.78906 0.81410 0.84001 1.90861 1.68118 1.63385 1.27929 1.45107 1.53962 1.21732 1.15726 1.19018 0.91123 0.92185 0.85069 1.21256 1.33119 1.05135 0.98902 0.92027 1.25557 0.94220 0.94622 1.02861 1.69973 1.34554 1.15296 1.36995 0.85878 0.79766 0.78579 0.79800 1.19046 1.19823 1.18461 1.21097 0.97981 0.97137 0.98443 1.21073 0.99083 0.93201 0.98529 1.67319 1.10879 1.30637 1.18382 1.22756 0.87489 0.99457 0.94064 0.90016 0.89909 0.90699 0.80659 0.82388 0.82599 0.81553 0.73596 0.75558 0.96832 0.96993 0.91819 0.86167 0.86242 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.03 71.24 0.71 0.15 16 2 C -0.17 -2.03 5.90 -19.77 -0.12 -2.14 16 3 C -0.04 -0.46 9.85 22.45 0.22 -0.24 16 4 C -0.18 -2.93 10.04 22.47 0.23 -2.70 16 5 C 0.28 6.41 7.39 84.79 0.63 7.04 16 6 O -0.26 -6.67 9.96 -34.05 -0.34 -7.01 16 7 C 0.06 1.75 5.21 22.51 0.12 1.86 16 8 C -0.10 -2.17 9.98 22.35 0.22 -1.95 16 9 C -0.12 -2.71 9.96 22.38 0.22 -2.48 16 10 C 0.16 4.64 6.30 38.11 0.24 4.88 16 11 N -0.67 -19.14 5.35 -317.05 -1.70 -20.84 16 12 C 0.69 26.87 8.41 179.05 1.51 28.37 16 13 O -0.62 -29.07 13.78 -4.02 -0.06 -29.12 16 14 N -0.71 -28.41 5.55 -482.29 -2.68 -31.08 16 15 C 0.25 12.27 4.50 85.63 0.38 12.65 16 16 C -0.55 -29.94 9.83 25.60 0.25 -29.69 16 17 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 18 C 0.03 1.57 5.47 84.66 0.46 2.04 16 19 N -0.93 -55.27 13.96 21.45 0.30 -54.97 16 20 Si 0.94 44.15 27.47 68.60 1.88 46.03 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.26 -12.21 6.54 99.48 0.65 -11.56 16 24 C -0.13 -4.15 8.69 22.38 0.19 -3.95 16 25 C -0.10 -3.00 9.44 22.35 0.21 -2.79 16 26 N -0.55 -13.15 8.99 -308.93 -2.78 -15.93 16 27 C 0.12 2.04 10.85 84.63 0.92 2.96 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.08 0.24 8.10 -2.39 -0.02 0.22 16 30 H 0.07 0.36 8.09 -2.39 -0.02 0.34 16 31 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.43 8.62 8.84 -92.71 -0.82 7.80 16 36 H 0.41 13.88 8.34 -92.71 -0.77 13.11 16 37 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 38 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 39 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.12 4.61 6.22 -2.91 -0.02 4.59 16 41 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 42 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -75.28 364.67 0.47 -74.81 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.57 Total: 24.10 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 6.40 Total: 14.01 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -6.85 Total: -122.82 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.39 Total: -36.13 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -75.28 0.47 -74.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785816680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.713 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds