Wall clock time and date at job start Tue Mar 31 2020 15:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.83627 * 2 1 4 4 C 1.54717 * 110.95040 * 123.72929 * 2 1 3 5 5 O 1.43760 * 102.77529 * 143.42701 * 4 2 1 6 6 C 1.35864 * 109.29453 * 332.35313 * 5 4 2 7 7 C 1.38874 * 111.31815 * 18.84217 * 6 5 4 8 8 C 1.37661 * 120.87887 * 179.29759 * 7 6 5 9 9 C 1.38642 * 120.31958 * 0.30144 * 8 7 6 10 10 C 1.37781 * 119.97594 * 359.70299 * 9 8 7 11 11 C 1.39531 * 120.18433 * 0.35119 * 10 9 8 12 12 C 1.47521 * 120.05143 * 179.87218 * 11 10 9 13 13 O 1.21623 * 119.99894 * 179.72130 * 12 11 10 14 14 N 1.34773 * 120.00175 * 359.97438 * 12 11 10 15 15 C 1.40546 * 120.00111 * 179.72595 * 14 12 11 16 16 C 1.40654 * 126.08487 * 0.02815 * 15 14 12 17 17 N 1.30899 * 108.38882 * 179.97438 * 16 15 14 18 18 N 1.40065 * 108.41219 * 359.97438 * 17 16 15 19 19 C 1.37319 * 126.06891 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00111 * 179.97438 * 19 18 17 21 21 C 1.38992 * 120.00240 * 359.97416 * 19 18 17 22 22 N 1.31291 * 119.99552 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46983 * 90.00171 * 23 21 19 25 25 H 1.48496 * 109.46959 * 209.99993 * 23 21 19 26 26 H 1.48507 * 109.46827 * 330.00065 * 23 21 19 27 27 C 1.35693 * 126.08086 * 179.71560 * 15 14 12 28 28 H 1.08994 * 109.47169 * 297.72144 * 1 2 3 29 29 H 1.08998 * 109.47301 * 57.72924 * 1 2 3 30 30 H 1.08999 * 109.46917 * 177.72450 * 1 2 3 31 31 H 1.08998 * 109.47367 * 182.27484 * 3 2 1 32 32 H 1.08995 * 109.47212 * 302.28040 * 3 2 1 33 33 H 1.09003 * 109.47407 * 62.27562 * 3 2 1 34 34 H 1.09002 * 110.74565 * 25.10595 * 4 2 1 35 35 H 1.08996 * 110.75261 * 261.75380 * 4 2 1 36 36 H 1.07997 * 119.83977 * 180.32630 * 8 7 6 37 37 H 1.08004 * 120.01479 * 179.97438 * 9 8 7 38 38 H 1.07997 * 119.91060 * 180.12289 * 10 9 8 39 39 H 0.97000 * 120.00112 * 359.73137 * 14 12 11 40 40 H 1.08007 * 125.80812 * 359.93841 * 16 15 14 41 41 H 0.97004 * 119.99645 * 179.97438 * 22 21 19 42 42 H 1.08000 * 126.24978 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0742 1.4299 0.0000 4 6 2.0832 -0.8023 1.2017 5 8 3.2484 -1.4384 0.6499 6 6 3.0734 -1.6148 -0.6858 7 6 2.0722 -0.7874 -1.1775 8 6 1.7418 -0.7955 -2.5138 9 6 2.4030 -1.6391 -3.3932 10 6 3.4002 -2.4701 -2.9315 11 6 3.7425 -2.4709 -1.5788 12 6 4.8088 -3.3640 -1.0871 13 8 5.1099 -3.3602 0.0913 14 7 5.4529 -4.1803 -1.9446 15 6 6.4727 -5.0269 -1.4771 16 6 6.9224 -5.1267 -0.1481 17 7 7.8799 -6.0180 -0.1020 18 7 8.0785 -6.5212 -1.3940 19 6 8.9961 -7.4759 -1.7576 20 1 9.0655 -7.7937 -2.7875 21 6 9.8356 -8.0332 -0.8003 22 7 9.7509 -7.6473 0.4517 23 14 11.0844 -9.3314 -1.2951 24 1 12.3608 -8.6723 -1.6714 25 1 11.3202 -10.2518 -0.1539 26 1 10.5648 -10.1019 -2.4534 27 6 7.1946 -5.8978 -2.2266 28 1 -0.3633 0.4780 0.9097 29 1 -0.3634 0.5487 -0.8689 30 1 -0.3633 -1.0269 -0.0408 31 1 3.1631 1.4043 -0.0408 32 1 1.6905 1.9647 -0.8688 33 1 1.7566 1.9396 0.9097 34 1 1.3592 -1.5455 1.5359 35 1 2.3578 -0.1346 2.0183 36 1 0.9640 -0.1412 -2.8790 37 1 2.1395 -1.6417 -4.4406 38 1 3.9160 -3.1254 -3.6178 39 1 5.2126 -4.1834 -2.8843 40 1 6.5427 -4.5632 0.6915 41 1 10.3366 -8.0365 1.1199 42 1 7.0902 -6.0655 -3.2884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789919564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:16 Heat of formation + Delta-G solvation = 47.928940 kcal Electronic energy + Delta-G solvation = -26865.375543 eV Core-core repulsion = 23006.079173 eV Total energy + Delta-G solvation = -3859.296371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.59102 -39.80238 -38.56253 -37.22151 -35.26639 -34.13662 -33.12027 -30.89487 -30.08303 -29.93054 -27.72633 -27.60371 -26.68397 -25.01797 -23.87940 -22.35031 -21.36532 -20.76491 -19.51633 -19.20515 -17.55722 -17.26435 -16.89717 -16.36233 -16.06933 -15.44739 -15.26749 -14.91435 -14.55746 -14.32680 -14.11442 -13.92243 -13.54676 -13.43442 -13.16676 -13.15238 -12.83411 -12.80570 -12.42850 -12.23713 -11.81852 -11.74024 -11.63662 -11.34951 -11.24978 -11.22728 -11.07724 -10.89699 -10.78238 -10.50547 -10.08573 -9.11414 -9.09266 -9.04346 -8.74400 -8.26659 -7.99333 -6.61888 -6.51020 -4.17213 0.83330 1.19694 2.92639 3.06108 3.07587 3.12863 3.21539 3.60195 3.62783 3.90893 3.96124 3.98537 4.24846 4.53827 4.56993 4.63679 4.75895 4.79557 4.98813 5.06882 5.06950 5.14897 5.21352 5.24997 5.33017 5.34116 5.46262 5.51158 5.54796 5.70311 5.83377 5.91919 6.05943 6.16746 6.24171 6.30401 6.43760 6.53981 6.96108 7.03291 7.08410 7.20555 7.30968 7.91410 8.26464 8.34870 8.70161 8.95883 9.43679 9.73284 10.45063 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.002456 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.594093 B =11399.232766 C =12087.936866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C -0.134 4.134 4 C 0.051 3.949 5 O -0.271 6.271 6 C 0.170 3.830 7 C -0.177 4.177 8 C -0.048 4.048 9 C -0.158 4.158 10 C -0.057 4.057 11 C -0.143 4.143 12 C 0.539 3.461 13 O -0.520 6.520 14 N -0.621 5.621 15 C -0.056 4.056 16 C -0.032 4.032 17 N -0.260 5.260 18 N -0.143 5.143 19 C -0.323 4.323 20 H 0.116 0.884 21 C 0.045 3.955 22 N -0.770 5.770 23 Si 0.934 3.066 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.264 1.264 27 C -0.085 4.085 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.394 0.606 40 H 0.177 0.823 41 H 0.274 0.726 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 14.747 -6.346 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 C -0.192 4.192 4 C -0.024 4.024 5 O -0.182 6.182 6 C 0.122 3.878 7 C -0.178 4.178 8 C -0.067 4.067 9 C -0.176 4.176 10 C -0.076 4.076 11 C -0.147 4.147 12 C 0.326 3.674 13 O -0.397 6.397 14 N -0.264 5.264 15 C -0.162 4.162 16 C -0.208 4.208 17 N -0.091 5.091 18 N 0.089 4.911 19 C -0.455 4.455 20 H 0.133 0.867 21 C -0.172 4.172 22 N -0.397 5.397 23 Si 0.758 3.242 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.236 4.236 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.228 0.772 40 H 0.193 0.807 41 H 0.085 0.915 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.583 14.030 -4.338 22.151 hybrid contribution -0.334 -0.066 -1.422 1.462 sum -16.917 13.964 -5.760 22.679 Atomic orbital electron populations 1.21754 0.92425 1.02543 1.02417 1.20826 0.96888 0.95884 0.91738 1.21789 1.01697 0.93384 1.02283 1.24092 0.86601 0.95652 0.96084 1.87047 1.37874 1.75560 1.17719 1.19436 0.92651 0.91467 0.84290 1.20677 1.01316 1.00412 0.95411 1.20367 0.98143 0.97268 0.90908 1.20910 0.98165 0.98635 0.99907 1.21113 0.95968 0.97426 0.93050 1.19389 1.01891 1.00396 0.92999 1.17856 0.82341 0.81037 0.86186 1.90722 1.65181 1.67589 1.16164 1.42406 1.34862 1.38634 1.10490 1.17255 1.00550 1.03957 0.94418 1.24142 0.98987 1.01748 0.95890 1.78247 1.18701 1.13956 0.98227 1.44542 1.19761 1.22557 1.04255 1.19855 1.13177 1.16124 0.96346 0.86662 1.25643 0.98326 0.98389 0.94798 1.70224 1.32685 1.35921 1.00840 0.85834 0.79959 0.79577 0.78797 1.19619 1.20117 1.18835 1.21244 1.01388 1.04653 0.96295 0.91834 0.91865 0.92011 0.91914 0.91914 0.91766 0.90246 0.87450 0.85746 0.85002 0.84773 0.77189 0.80660 0.91504 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.53 37.16 0.32 -0.56 16 2 C -0.05 -0.48 1.03 -154.28 -0.16 -0.63 16 3 C -0.13 -1.04 8.61 37.16 0.32 -0.73 16 4 C 0.05 0.54 7.10 38.06 0.27 0.81 16 5 O -0.27 -4.35 10.12 -34.91 -0.35 -4.70 16 6 C 0.17 2.56 6.73 -38.44 -0.26 2.30 16 7 C -0.18 -2.00 5.05 -104.12 -0.53 -2.53 16 8 C -0.05 -0.45 9.91 -39.64 -0.39 -0.84 16 9 C -0.16 -1.47 10.05 -39.60 -0.40 -1.86 16 10 C -0.06 -0.65 9.51 -39.27 -0.37 -1.03 16 11 C -0.14 -2.23 5.89 -104.72 -0.62 -2.84 16 12 C 0.54 10.73 7.73 -12.48 -0.10 10.63 16 13 O -0.52 -12.46 13.01 -10.34 -0.13 -12.60 16 14 N -0.62 -11.92 5.41 -10.94 -0.06 -11.98 16 15 C -0.06 -1.36 6.90 -83.86 -0.58 -1.94 16 16 C -0.03 -0.89 10.85 -17.04 -0.18 -1.07 16 17 N -0.26 -7.82 10.39 30.80 0.32 -7.50 16 18 N -0.14 -4.04 3.74 -11.40 -0.04 -4.08 16 19 C -0.32 -8.71 10.25 -14.81 -0.15 -8.87 16 20 H 0.12 2.77 7.83 -52.48 -0.41 2.36 16 21 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -22.00 11.81 55.50 0.66 -21.34 16 23 Si 0.93 19.26 29.55 -169.99 -5.02 14.24 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 27 C -0.08 -2.06 11.49 -16.38 -0.19 -2.25 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.11 0.91 7.92 -51.93 -0.41 0.50 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.13 1.23 6.37 -52.49 -0.33 0.90 16 39 H 0.39 5.80 6.83 -40.82 -0.28 5.52 16 40 H 0.18 4.87 5.91 -52.48 -0.31 4.56 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.15 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -36.26 354.62 -7.50 -43.77 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.10 Total: 9.16 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -3.11 Total: -10.30 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.87 Total: -44.91 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.49 Total: -17.30 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.26 -7.50 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789919564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.695 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds