Wall clock time and date at job start Tue Mar 31 2020 15:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.83627 * 2 1 4 4 C 1.54717 * 110.95040 * 123.72929 * 2 1 3 5 5 O 1.43760 * 102.77529 * 143.42701 * 4 2 1 6 6 C 1.35864 * 109.29453 * 332.35313 * 5 4 2 7 7 C 1.38874 * 111.31815 * 18.84217 * 6 5 4 8 8 C 1.37661 * 120.87887 * 179.29759 * 7 6 5 9 9 C 1.38642 * 120.31958 * 0.30144 * 8 7 6 10 10 C 1.37781 * 119.97594 * 359.70299 * 9 8 7 11 11 C 1.39531 * 120.18433 * 0.35119 * 10 9 8 12 12 C 1.47521 * 120.05143 * 179.87218 * 11 10 9 13 13 O 1.21623 * 119.99894 * 179.72130 * 12 11 10 14 14 N 1.34773 * 120.00175 * 359.97438 * 12 11 10 15 15 C 1.40546 * 120.00111 * 179.72595 * 14 12 11 16 16 C 1.40654 * 126.08487 * 0.02815 * 15 14 12 17 17 N 1.30899 * 108.38882 * 179.97438 * 16 15 14 18 18 N 1.40065 * 108.41219 * 359.97438 * 17 16 15 19 19 C 1.37319 * 126.06891 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00111 * 179.97438 * 19 18 17 21 21 C 1.38992 * 120.00240 * 359.97416 * 19 18 17 22 22 N 1.31291 * 119.99552 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46983 * 90.00171 * 23 21 19 25 25 H 1.48496 * 109.46959 * 209.99993 * 23 21 19 26 26 H 1.48507 * 109.46827 * 330.00065 * 23 21 19 27 27 C 1.35693 * 126.08086 * 179.71560 * 15 14 12 28 28 H 1.08994 * 109.47169 * 297.72144 * 1 2 3 29 29 H 1.08998 * 109.47301 * 57.72924 * 1 2 3 30 30 H 1.08999 * 109.46917 * 177.72450 * 1 2 3 31 31 H 1.08998 * 109.47367 * 182.27484 * 3 2 1 32 32 H 1.08995 * 109.47212 * 302.28040 * 3 2 1 33 33 H 1.09003 * 109.47407 * 62.27562 * 3 2 1 34 34 H 1.09002 * 110.74565 * 25.10595 * 4 2 1 35 35 H 1.08996 * 110.75261 * 261.75380 * 4 2 1 36 36 H 1.07997 * 119.83977 * 180.32630 * 8 7 6 37 37 H 1.08004 * 120.01479 * 179.97438 * 9 8 7 38 38 H 1.07997 * 119.91060 * 180.12289 * 10 9 8 39 39 H 0.97000 * 120.00112 * 359.73137 * 14 12 11 40 40 H 1.08007 * 125.80812 * 359.93841 * 16 15 14 41 41 H 0.97004 * 119.99645 * 179.97438 * 22 21 19 42 42 H 1.08000 * 126.24978 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0742 1.4299 0.0000 4 6 2.0832 -0.8023 1.2017 5 8 3.2484 -1.4384 0.6499 6 6 3.0734 -1.6148 -0.6858 7 6 2.0722 -0.7874 -1.1775 8 6 1.7418 -0.7955 -2.5138 9 6 2.4030 -1.6391 -3.3932 10 6 3.4002 -2.4701 -2.9315 11 6 3.7425 -2.4709 -1.5788 12 6 4.8088 -3.3640 -1.0871 13 8 5.1099 -3.3602 0.0913 14 7 5.4529 -4.1803 -1.9446 15 6 6.4727 -5.0269 -1.4771 16 6 6.9224 -5.1267 -0.1481 17 7 7.8799 -6.0180 -0.1020 18 7 8.0785 -6.5212 -1.3940 19 6 8.9961 -7.4759 -1.7576 20 1 9.0655 -7.7937 -2.7875 21 6 9.8356 -8.0332 -0.8003 22 7 9.7509 -7.6473 0.4517 23 14 11.0844 -9.3314 -1.2951 24 1 12.3608 -8.6723 -1.6714 25 1 11.3202 -10.2518 -0.1539 26 1 10.5648 -10.1019 -2.4534 27 6 7.1946 -5.8978 -2.2266 28 1 -0.3633 0.4780 0.9097 29 1 -0.3634 0.5487 -0.8689 30 1 -0.3633 -1.0269 -0.0408 31 1 3.1631 1.4043 -0.0408 32 1 1.6905 1.9647 -0.8688 33 1 1.7566 1.9396 0.9097 34 1 1.3592 -1.5455 1.5359 35 1 2.3578 -0.1346 2.0183 36 1 0.9640 -0.1412 -2.8790 37 1 2.1395 -1.6417 -4.4406 38 1 3.9160 -3.1254 -3.6178 39 1 5.2126 -4.1834 -2.8843 40 1 6.5427 -4.5632 0.6915 41 1 10.3366 -8.0365 1.1199 42 1 7.0902 -6.0655 -3.2884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789919564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:15 Heat of formation + Delta-G solvation = 23.792473 kcal Electronic energy + Delta-G solvation = -26866.422179 eV Core-core repulsion = 23006.079173 eV Total energy + Delta-G solvation = -3860.343006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.52445 -41.66848 -40.17783 -38.24642 -36.09338 -35.92566 -34.99483 -32.38458 -31.73191 -30.81230 -29.46697 -28.25247 -27.43817 -26.90612 -25.08379 -23.32153 -22.91760 -22.36505 -21.27472 -20.49299 -19.27848 -18.31002 -18.11051 -17.43117 -17.42213 -17.04593 -16.67407 -16.12877 -15.97758 -15.76593 -15.31577 -15.07875 -14.85413 -14.74514 -14.55981 -14.42819 -13.84219 -13.64992 -13.49903 -13.36782 -13.15489 -12.93659 -12.89184 -12.85910 -12.61802 -12.36631 -12.08495 -11.93791 -11.86871 -11.82609 -11.57145 -11.02660 -10.85322 -10.69400 -10.12391 -9.96796 -9.19773 -8.52771 -8.47488 -6.24973 -0.16009 0.32453 1.26469 1.39434 1.57958 1.64538 1.90375 2.03198 2.26940 2.31583 2.45767 2.86877 2.90230 3.09029 3.23940 3.49939 3.76656 3.91147 3.94871 4.12221 4.25594 4.36505 4.40391 4.46666 4.49295 4.55722 4.60125 4.76256 4.78576 4.93841 4.96480 4.99032 5.03867 5.05599 5.21447 5.25429 5.28811 5.34176 5.39622 5.41993 5.45117 5.67384 5.94937 6.15740 6.29839 6.70907 6.73934 7.37531 7.46231 7.66143 8.52184 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.002456 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.594093 B =11399.232766 C =12087.936866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.046 4.046 3 C -0.131 4.131 4 C 0.038 3.962 5 O -0.317 6.317 6 C 0.135 3.865 7 C -0.177 4.177 8 C -0.036 4.036 9 C -0.144 4.144 10 C -0.055 4.055 11 C -0.178 4.178 12 C 0.535 3.465 13 O -0.572 6.572 14 N -0.611 5.611 15 C -0.044 4.044 16 C -0.063 4.063 17 N -0.309 5.309 18 N -0.166 5.166 19 C -0.353 4.353 20 H 0.144 0.856 21 C -0.010 4.010 22 N -0.826 5.826 23 Si 1.022 2.978 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.242 1.242 27 C -0.079 4.079 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.165 0.835 37 H 0.175 0.825 38 H 0.156 0.844 39 H 0.418 0.582 40 H 0.161 0.839 41 H 0.276 0.724 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.204 15.763 -10.373 27.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.046 4.046 3 C -0.188 4.188 4 C -0.036 4.036 5 O -0.230 6.230 6 C 0.087 3.913 7 C -0.178 4.178 8 C -0.054 4.054 9 C -0.162 4.162 10 C -0.074 4.074 11 C -0.182 4.182 12 C 0.325 3.675 13 O -0.453 6.453 14 N -0.257 5.257 15 C -0.150 4.150 16 C -0.238 4.238 17 N -0.142 5.142 18 N 0.065 4.935 19 C -0.484 4.484 20 H 0.161 0.839 21 C -0.221 4.221 22 N -0.454 5.454 23 Si 0.841 3.159 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.165 1.165 27 C -0.230 4.230 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.183 0.817 37 H 0.192 0.808 38 H 0.174 0.826 39 H 0.256 0.744 40 H 0.178 0.822 41 H 0.086 0.914 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -18.896 15.080 -8.425 25.602 hybrid contribution 0.197 -0.223 -0.197 0.357 sum -18.699 14.856 -8.623 25.391 Atomic orbital electron populations 1.21750 0.90040 1.02664 1.04158 1.20872 0.98524 0.95690 0.89544 1.21787 1.00030 0.92943 1.04082 1.24415 0.85594 0.96181 0.97435 1.86978 1.40487 1.76556 1.19013 1.19874 0.94325 0.92906 0.84162 1.21046 1.00057 0.99672 0.96982 1.20925 0.97968 0.96724 0.89742 1.21418 0.96221 0.96678 1.01861 1.21406 0.96610 0.98103 0.91262 1.19289 1.02177 1.01485 0.95243 1.18727 0.82536 0.80725 0.85529 1.90689 1.66878 1.69102 1.18606 1.42297 1.33742 1.37848 1.11797 1.17347 1.00832 1.03788 0.93009 1.24102 0.99912 1.02378 0.97442 1.78143 1.20184 1.15445 1.00422 1.44868 1.21041 1.23512 1.04102 1.20674 1.13429 1.16314 0.97955 0.83861 1.26960 1.00259 1.00544 0.94325 1.70421 1.34353 1.38056 1.02599 0.84554 0.76556 0.75990 0.78835 1.18836 1.20278 1.16469 1.21996 0.99743 1.03228 0.98003 0.90316 0.89932 0.92695 0.94496 0.90099 0.89999 0.89982 0.86216 0.81714 0.80778 0.82626 0.74375 0.82225 0.91407 0.79020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 8.53 71.98 0.61 -0.66 16 2 C -0.05 -0.75 1.03 -52.03 -0.05 -0.80 16 3 C -0.13 -1.78 8.61 71.98 0.62 -1.16 16 4 C 0.04 0.84 7.10 72.57 0.52 1.35 16 5 O -0.32 -11.01 10.12 -77.11 -0.78 -11.79 16 6 C 0.13 4.18 6.73 23.01 0.15 4.33 16 7 C -0.18 -3.67 5.05 -19.54 -0.10 -3.77 16 8 C -0.04 -0.51 9.91 22.23 0.22 -0.29 16 9 C -0.14 -2.00 10.05 22.26 0.22 -1.78 16 10 C -0.06 -1.14 9.51 22.47 0.21 -0.92 16 11 C -0.18 -5.63 5.89 -19.93 -0.12 -5.74 16 12 C 0.53 22.37 7.73 86.69 0.67 23.04 16 13 O -0.57 -29.85 13.01 10.81 0.14 -29.71 16 14 N -0.61 -23.75 5.41 -306.78 -1.66 -25.41 16 15 C -0.04 -2.17 6.90 37.74 0.26 -1.91 16 16 C -0.06 -3.76 10.85 85.42 0.93 -2.83 16 17 N -0.31 -19.73 10.39 -56.46 -0.59 -20.32 16 18 N -0.17 -9.60 3.74 -189.99 -0.71 -10.31 16 19 C -0.35 -19.14 10.25 84.01 0.86 -18.28 16 20 H 0.14 6.66 7.83 -2.91 -0.02 6.64 16 21 C -0.01 -0.51 5.50 84.95 0.47 -0.04 16 22 N -0.83 -49.33 11.81 21.66 0.26 -49.07 16 23 Si 1.02 39.45 29.55 68.60 2.03 41.47 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 26 H -0.24 -8.37 7.11 99.48 0.71 -7.67 16 27 C -0.08 -3.84 11.49 83.38 0.96 -2.88 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.65 7.92 -2.39 -0.02 1.63 16 35 H 0.12 2.14 7.92 -2.39 -0.02 2.12 16 36 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 37 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.16 2.35 6.37 -2.91 -0.02 2.33 16 39 H 0.42 11.72 6.83 -92.71 -0.63 11.09 16 40 H 0.16 9.80 5.91 -2.91 -0.02 9.78 16 41 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.19 7.16 8.06 -2.91 -0.02 7.14 16 Total: -1.00 -88.64 354.62 5.56 -83.08 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.43 Total: 34.40 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 6.44 Total: -12.35 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -2.70 Total: -105.11 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.64 Total: -41.50 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.47 kcal Total: -88.64 5.56 -83.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789919564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.873 kcal (2) G-P(sol) polarization free energy of solvation -88.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds