Wall clock time and date at job start Tue Mar 31 2020 14:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38346 * 120.45362 * 2 1 4 4 C 1.38839 * 118.50519 * 180.02562 * 3 2 1 5 5 C 1.38067 * 119.32963 * 359.97438 * 4 3 2 6 6 N 1.31947 * 120.85347 * 359.74199 * 5 4 3 7 7 C 1.32416 * 121.62169 * 0.52778 * 6 5 4 8 8 N 1.39006 * 119.70470 * 179.75210 * 7 6 5 9 9 N 1.40096 * 119.99927 * 359.72546 * 8 7 6 10 10 C 1.34780 * 119.99985 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00129 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99933 * 180.02562 * 10 9 8 13 13 C 1.50701 * 109.47242 * 179.97438 * 12 10 9 14 14 C 1.38299 * 119.93217 * 269.72899 * 13 12 10 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46896 * 90.00233 * 22 20 18 24 24 H 1.48505 * 109.47024 * 209.99798 * 22 20 18 25 25 H 1.48496 * 109.47185 * 330.00029 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47440 * 269.97883 * 1 2 3 29 29 H 1.09009 * 109.47050 * 29.97804 * 1 2 3 30 30 H 1.08999 * 109.47020 * 149.97471 * 1 2 3 31 31 H 1.07992 * 120.74547 * 0.04231 * 3 2 1 32 32 H 1.08000 * 120.33441 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.57226 * 179.97438 * 5 4 3 34 34 H 0.97007 * 119.99918 * 179.72735 * 8 7 6 35 35 H 0.97002 * 120.00124 * 359.97438 * 9 8 7 36 36 H 1.09002 * 109.47056 * 59.99417 * 12 10 9 37 37 H 1.09001 * 109.46884 * 299.99904 * 12 10 9 38 38 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 39 39 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 40 40 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 42 42 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1454 -0.0005 5 6 4.2307 -0.0806 -0.0005 6 7 3.5361 -1.2024 0.0051 7 6 2.2120 -1.1991 0.0005 8 7 1.5201 -2.4048 0.0015 9 7 2.2239 -3.6162 0.0016 10 6 1.5531 -4.7852 0.0020 11 8 0.3403 -4.7885 0.0029 12 6 2.3101 -6.0883 0.0026 13 6 1.3339 -7.2364 0.0037 14 6 0.8916 -7.7650 1.2027 15 6 -0.0072 -8.8134 1.2070 16 6 -0.4580 -9.3445 0.0055 17 8 -1.3368 -10.3793 0.0066 18 6 -1.8213 -10.7720 -1.1888 19 1 -1.4466 -10.3235 -2.0970 20 6 -2.8006 -11.7514 -1.2520 21 7 -3.2567 -12.2980 -0.1456 22 14 -3.4724 -12.2950 -2.9081 23 1 -2.6594 -13.4249 -3.4253 24 1 -4.8831 -12.7315 -2.7509 25 1 -3.4088 -11.1608 -3.8645 26 6 -0.0077 -8.8152 -1.1968 27 6 0.8869 -7.7632 -1.1945 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8903 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6879 2.1389 0.0007 32 1 4.1725 2.0584 -0.0010 33 1 5.3099 -0.1219 -0.0014 34 1 0.5501 -2.4074 0.0022 35 1 3.1939 -3.6136 0.0005 36 1 2.9370 -6.1439 0.8926 37 1 2.9370 -6.1447 -0.8873 38 1 1.2466 -7.3548 2.1366 39 1 -0.3556 -9.2229 2.1436 40 1 -3.9421 -12.9829 -0.1899 41 1 -0.3561 -9.2264 -2.1327 42 1 1.2378 -7.3514 -2.1292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791221380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:04 Heat of formation + Delta-G solvation = 36.570546 kcal Electronic energy + Delta-G solvation = -25612.933742 eV Core-core repulsion = 21753.144834 eV Total energy + Delta-G solvation = -3859.788908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.78714 -39.74771 -38.79113 -36.69870 -35.94527 -34.05976 -32.74934 -32.36274 -31.35009 -30.13678 -29.41944 -27.47249 -26.47870 -25.09145 -23.23627 -22.51380 -21.95612 -21.37313 -20.29155 -18.61804 -17.96711 -17.89692 -16.92358 -16.55344 -15.84027 -15.57983 -15.50184 -14.95311 -14.68127 -14.46952 -14.36482 -14.25613 -13.86737 -13.57172 -13.37762 -13.35833 -13.19235 -12.89073 -12.70166 -12.61351 -12.09601 -11.92217 -11.75884 -11.49022 -11.25800 -10.85943 -10.76563 -10.60199 -10.41328 -10.04952 -10.01758 -9.80259 -9.50087 -9.30460 -8.80473 -8.13138 -7.63851 -7.15574 -6.42705 -4.01179 0.89363 1.08277 1.72525 2.27445 2.37929 2.64719 3.14185 3.15609 3.20433 3.54335 3.62055 3.98888 4.35968 4.42501 4.54201 4.68432 4.71813 4.84347 5.07191 5.11295 5.14431 5.23886 5.24764 5.29615 5.33368 5.38117 5.64391 5.66540 5.74247 5.75008 5.86378 5.96483 6.20852 6.24160 6.43770 6.57450 6.72808 6.93447 7.03369 7.08158 7.25766 7.38213 7.40410 7.47217 7.80345 7.85633 8.02571 8.31617 9.02975 9.73345 10.75337 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.001971 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.689345 B =14200.415654 C =14628.101519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.197 4.197 3 C -0.030 4.030 4 C -0.234 4.234 5 C 0.148 3.852 6 N -0.548 5.548 7 C 0.406 3.594 8 N -0.519 5.519 9 N -0.526 5.526 10 C 0.507 3.493 11 O -0.524 6.524 12 C -0.066 4.066 13 C -0.173 4.173 14 C -0.057 4.057 15 C -0.192 4.192 16 C 0.158 3.842 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.233 4.233 27 C -0.054 4.054 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.156 0.844 34 H 0.440 0.560 35 H 0.429 0.571 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.270 0.730 41 H 0.127 0.873 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.264 24.996 -0.249 28.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.206 4.206 3 C -0.056 4.056 4 C -0.257 4.257 5 C -0.010 4.010 6 N -0.266 5.266 7 C 0.169 3.831 8 N -0.248 5.248 9 N -0.275 5.275 10 C 0.294 3.706 11 O -0.397 6.397 12 C -0.108 4.108 13 C -0.174 4.174 14 C -0.076 4.076 15 C -0.211 4.211 16 C 0.104 3.896 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.252 4.252 27 C -0.073 4.073 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.174 0.826 34 H 0.286 0.714 35 H 0.270 0.730 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.591 23.642 0.004 27.270 hybrid contribution -0.625 0.675 -0.900 1.287 sum 12.966 24.317 -0.896 27.572 Atomic orbital electron populations 1.20633 0.90223 1.03027 1.02640 1.19997 0.97183 0.91783 1.11612 1.21205 0.93986 0.97101 0.93330 1.21805 0.95063 0.99356 1.09481 1.22362 0.99606 0.86787 0.92226 1.67039 1.05626 1.32481 1.21451 1.18041 0.88792 0.84087 0.92160 1.43383 1.06709 0.94018 1.80705 1.45133 1.08706 0.96137 1.77484 1.21487 0.89102 0.83740 0.76314 1.90760 1.13778 1.86772 1.48428 1.20311 0.97437 0.88510 1.04498 1.18561 1.05116 0.99925 0.93817 1.20408 0.95820 0.95060 0.96299 1.20155 1.03805 1.00899 0.96242 1.19391 0.89602 0.87326 0.93287 1.83977 1.50630 1.40468 1.32995 1.21331 1.20738 1.21506 0.83131 0.89057 1.25293 0.95869 0.96136 0.99272 1.70041 1.27467 1.25313 1.26940 0.85712 0.78371 0.79175 0.80173 1.19886 1.20263 1.19202 1.21102 1.04006 1.01690 0.98421 1.20519 0.95611 0.94977 0.96161 0.90932 0.90847 0.91823 0.84774 0.85036 0.82634 0.71361 0.72964 0.88404 0.88451 0.87294 0.86499 0.92045 0.85551 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.59 36.00 0.35 -0.40 16 2 C -0.20 -1.71 5.92 -104.26 -0.62 -2.33 16 3 C -0.03 -0.21 9.85 -39.32 -0.39 -0.60 16 4 C -0.23 -1.54 10.10 -39.42 -0.40 -1.94 16 5 C 0.15 1.14 11.17 -17.56 -0.20 0.94 16 6 N -0.55 -5.59 9.37 -12.44 -0.12 -5.70 16 7 C 0.41 4.29 7.58 -155.02 -1.17 3.11 16 8 N -0.52 -5.95 6.33 31.12 0.20 -5.76 16 9 N -0.53 -6.03 6.29 31.22 0.20 -5.83 16 10 C 0.51 7.07 7.94 -10.98 -0.09 6.98 16 11 O -0.52 -9.67 15.87 5.56 0.09 -9.58 16 12 C -0.07 -0.81 5.83 -29.03 -0.17 -0.98 16 13 C -0.17 -2.98 4.38 -104.57 -0.46 -3.44 16 14 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 15 C -0.19 -4.19 9.99 -39.40 -0.39 -4.59 16 16 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 17 O -0.18 -5.18 9.76 0.05 0.00 -5.18 16 18 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 22 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 C -0.23 -5.23 9.17 -39.40 -0.36 -5.59 16 27 C -0.05 -1.03 9.69 -39.61 -0.38 -1.41 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.39 8.10 -51.92 -0.42 -0.03 16 30 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 31 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.44 5.10 5.98 -182.59 -1.09 4.01 16 35 H 0.43 4.07 7.95 -182.60 -1.45 2.62 16 36 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -35.26 365.09 -9.93 -45.19 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.81 Total: 8.28 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -4.73 Total: -17.87 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 1.04 Total: -42.19 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.09 Total: -14.75 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.26 -9.93 -45.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791221380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.765 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds