Wall clock time and date at job start Tue Mar 31 2020 14:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38346 * 120.45362 * 2 1 4 4 C 1.38839 * 118.50519 * 180.02562 * 3 2 1 5 5 C 1.38067 * 119.32963 * 359.97438 * 4 3 2 6 6 N 1.31947 * 120.85347 * 359.74199 * 5 4 3 7 7 C 1.32416 * 121.62169 * 0.52778 * 6 5 4 8 8 N 1.39006 * 119.70470 * 179.75210 * 7 6 5 9 9 N 1.40096 * 119.99927 * 359.72546 * 8 7 6 10 10 C 1.34780 * 119.99985 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00129 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99933 * 180.02562 * 10 9 8 13 13 C 1.50701 * 109.47242 * 179.97438 * 12 10 9 14 14 C 1.38299 * 119.93217 * 269.72899 * 13 12 10 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46896 * 90.00233 * 22 20 18 24 24 H 1.48505 * 109.47024 * 209.99798 * 22 20 18 25 25 H 1.48496 * 109.47185 * 330.00029 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47440 * 269.97883 * 1 2 3 29 29 H 1.09009 * 109.47050 * 29.97804 * 1 2 3 30 30 H 1.08999 * 109.47020 * 149.97471 * 1 2 3 31 31 H 1.07992 * 120.74547 * 0.04231 * 3 2 1 32 32 H 1.08000 * 120.33441 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.57226 * 179.97438 * 5 4 3 34 34 H 0.97007 * 119.99918 * 179.72735 * 8 7 6 35 35 H 0.97002 * 120.00124 * 359.97438 * 9 8 7 36 36 H 1.09002 * 109.47056 * 59.99417 * 12 10 9 37 37 H 1.09001 * 109.46884 * 299.99904 * 12 10 9 38 38 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 39 39 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 40 40 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 42 42 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1454 -0.0005 5 6 4.2307 -0.0806 -0.0005 6 7 3.5361 -1.2024 0.0051 7 6 2.2120 -1.1991 0.0005 8 7 1.5201 -2.4048 0.0015 9 7 2.2239 -3.6162 0.0016 10 6 1.5531 -4.7852 0.0020 11 8 0.3403 -4.7885 0.0029 12 6 2.3101 -6.0883 0.0026 13 6 1.3339 -7.2364 0.0037 14 6 0.8916 -7.7650 1.2027 15 6 -0.0072 -8.8134 1.2070 16 6 -0.4580 -9.3445 0.0055 17 8 -1.3368 -10.3793 0.0066 18 6 -1.8213 -10.7720 -1.1888 19 1 -1.4466 -10.3235 -2.0970 20 6 -2.8006 -11.7514 -1.2520 21 7 -3.2567 -12.2980 -0.1456 22 14 -3.4724 -12.2950 -2.9081 23 1 -2.6594 -13.4249 -3.4253 24 1 -4.8831 -12.7315 -2.7509 25 1 -3.4088 -11.1608 -3.8645 26 6 -0.0077 -8.8152 -1.1968 27 6 0.8869 -7.7632 -1.1945 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8903 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6879 2.1389 0.0007 32 1 4.1725 2.0584 -0.0010 33 1 5.3099 -0.1219 -0.0014 34 1 0.5501 -2.4074 0.0022 35 1 3.1939 -3.6136 0.0005 36 1 2.9370 -6.1439 0.8926 37 1 2.9370 -6.1447 -0.8873 38 1 1.2466 -7.3548 2.1366 39 1 -0.3556 -9.2229 2.1436 40 1 -3.9421 -12.9829 -0.1899 41 1 -0.3561 -9.2264 -2.1327 42 1 1.2378 -7.3514 -2.1292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791221380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:03 Heat of formation + Delta-G solvation = 13.372313 kcal Electronic energy + Delta-G solvation = -25613.939693 eV Core-core repulsion = 21753.144834 eV Total energy + Delta-G solvation = -3860.794858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52142 -40.96625 -40.33076 -38.29755 -36.95374 -34.68531 -34.40787 -33.57270 -32.61972 -31.78044 -30.29111 -28.22195 -27.85588 -26.89639 -23.98662 -23.63885 -23.15950 -22.61065 -21.55193 -19.85906 -19.43840 -18.80567 -18.78358 -17.37547 -16.74560 -16.62603 -16.34237 -16.14113 -16.11283 -15.92730 -15.52806 -15.49815 -15.15131 -14.97782 -14.82577 -14.41528 -14.16259 -13.86725 -13.77400 -13.61153 -13.40580 -13.02178 -12.97958 -12.65636 -12.49936 -12.43903 -12.31791 -12.25532 -12.13252 -11.18790 -11.16524 -10.78691 -10.67386 -10.46375 -10.24080 -9.76425 -8.91932 -8.47782 -8.40848 -6.15907 0.31095 0.48058 0.57438 0.61734 1.06051 1.33442 1.43471 1.51468 1.60749 2.17141 2.74626 2.91673 2.94015 3.16861 3.51794 3.71990 3.83173 3.87580 4.04809 4.05684 4.16914 4.20085 4.23498 4.46896 4.47992 4.59699 4.67884 4.69250 4.73055 4.80219 4.85970 5.08151 5.14308 5.14944 5.21606 5.29929 5.41859 5.52290 5.57341 5.71519 5.76720 5.89417 6.02539 6.21004 6.23102 6.56126 6.96724 7.08441 7.38373 7.77969 8.75587 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.001971 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.689345 B =14200.415654 C =14628.101519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.207 4.207 3 C -0.035 4.035 4 C -0.225 4.225 5 C 0.132 3.868 6 N -0.565 5.565 7 C 0.379 3.621 8 N -0.532 5.532 9 N -0.510 5.510 10 C 0.509 3.491 11 O -0.579 6.579 12 C -0.064 4.064 13 C -0.146 4.146 14 C -0.055 4.055 15 C -0.207 4.207 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.245 4.245 27 C -0.058 4.058 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.182 0.818 34 H 0.436 0.564 35 H 0.439 0.561 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.273 0.727 41 H 0.117 0.883 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.212 28.617 -1.311 33.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.215 4.215 3 C -0.060 4.060 4 C -0.247 4.247 5 C -0.025 4.025 6 N -0.284 5.284 7 C 0.145 3.855 8 N -0.263 5.263 9 N -0.257 5.257 10 C 0.297 3.703 11 O -0.457 6.457 12 C -0.104 4.104 13 C -0.147 4.147 14 C -0.073 4.073 15 C -0.226 4.226 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.264 4.264 27 C -0.076 4.076 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.199 0.801 34 H 0.282 0.718 35 H 0.283 0.717 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 16.652 27.355 -1.053 32.042 hybrid contribution -1.200 0.003 -0.464 1.286 sum 15.452 27.357 -1.517 31.456 Atomic orbital electron populations 1.20653 0.89534 1.03349 1.02891 1.20264 0.97950 0.91853 1.11424 1.21616 0.94474 0.97573 0.92377 1.22201 0.95180 1.00136 1.07182 1.22914 1.00879 0.86690 0.91999 1.67015 1.05589 1.33893 1.21859 1.18291 0.89323 0.84172 0.93746 1.43473 1.06641 0.94113 1.82067 1.44894 1.09107 0.96019 1.75690 1.21573 0.88344 0.84690 0.75734 1.90763 1.15981 1.87498 1.51418 1.20431 0.96379 0.85258 1.08372 1.19152 1.03372 0.99668 0.92545 1.20887 0.94263 0.93423 0.98722 1.20441 1.04827 1.02057 0.95274 1.19951 0.90346 0.87985 0.95403 1.83938 1.53282 1.43221 1.33548 1.21817 1.21419 1.22128 0.83626 0.88239 1.26620 0.95853 0.95889 1.03846 1.70189 1.29038 1.26894 1.29791 0.84576 0.77707 0.79127 0.74707 1.18495 1.19530 1.17896 1.21225 1.05061 1.02883 0.97223 1.20946 0.94396 0.93630 0.98597 0.90705 0.89124 0.92876 0.82126 0.82142 0.80113 0.71845 0.71715 0.84479 0.84722 0.83444 0.86966 0.91837 0.86476 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.59 71.23 0.68 -0.68 16 2 C -0.21 -3.21 5.92 -19.63 -0.12 -3.33 16 3 C -0.03 -0.38 9.85 22.44 0.22 -0.16 16 4 C -0.22 -2.17 10.10 22.37 0.23 -1.94 16 5 C 0.13 1.64 11.17 84.63 0.95 2.59 16 6 N -0.56 -10.27 9.37 -193.26 -1.81 -12.08 16 7 C 0.38 7.43 7.58 133.05 1.01 8.44 16 8 N -0.53 -11.60 6.33 -55.44 -0.35 -11.95 16 9 N -0.51 -10.44 6.29 -173.53 -1.09 -11.54 16 10 C 0.51 12.78 7.94 87.66 0.70 13.48 16 11 O -0.58 -20.67 15.87 -3.04 -0.05 -20.71 16 12 C -0.06 -1.27 5.83 29.10 0.17 -1.10 16 13 C -0.15 -4.62 4.38 -19.83 -0.09 -4.71 16 14 C -0.06 -1.93 9.69 22.25 0.22 -1.71 16 15 C -0.21 -9.31 9.99 22.39 0.22 -9.09 16 16 C 0.11 5.95 6.65 22.58 0.15 6.10 16 17 O -0.23 -14.64 9.76 -22.74 -0.22 -14.86 16 18 C -0.41 -25.03 9.49 67.92 0.64 -24.39 16 19 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 20 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 21 N -0.92 -58.06 13.67 21.61 0.30 -57.76 16 22 Si 1.02 44.24 29.55 68.60 2.03 46.27 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 C -0.24 -11.26 9.17 22.39 0.21 -11.06 16 27 C -0.06 -2.08 9.69 22.25 0.22 -1.87 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.79 8.10 -2.38 -0.02 0.77 16 30 H 0.05 0.78 6.57 -2.39 -0.02 0.77 16 31 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 32 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.44 10.04 5.98 -213.31 -1.28 8.76 16 35 H 0.44 6.96 7.95 -213.32 -1.70 5.27 16 36 H 0.14 1.78 8.08 -2.39 -0.02 1.76 16 37 H 0.13 1.81 8.08 -2.39 -0.02 1.79 16 38 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 42 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -84.58 365.09 2.78 -81.80 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -1.89 Total: 31.24 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 5.87 Total: -30.40 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -2.96 Total: -93.33 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.27 Total: -35.58 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -84.58 2.78 -81.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791221380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.176 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds