Wall clock time and date at job start Tue Mar 31 2020 16:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29414 * 125.69390 * 2 1 4 4 N 1.26398 * 116.47318 * 179.73675 * 3 2 1 5 5 C 1.29419 * 116.47559 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.69386 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.47306 * 89.97340 * 6 5 4 8 8 C 1.42898 * 113.99968 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46802 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00226 * 354.72571 * 9 8 7 11 11 N 1.34780 * 119.99740 * 174.72084 * 9 8 7 12 12 C 1.46502 * 119.99969 * 185.41172 * 11 9 8 13 13 C 1.50692 * 109.47228 * 90.00323 * 12 11 9 14 14 H 1.08005 * 120.00015 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00041 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00417 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99882 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47279 * 89.99616 * 17 15 13 19 19 H 1.48507 * 109.46843 * 209.99877 * 17 15 13 20 20 H 1.48508 * 109.47158 * 329.99353 * 17 15 13 21 21 C 1.46504 * 120.00199 * 5.41405 * 11 9 8 22 22 C 1.53001 * 109.46953 * 96.67967 * 21 11 9 23 23 C 1.53002 * 109.46604 * 174.10445 * 22 21 11 24 24 C 1.52994 * 109.47444 * 294.10560 * 22 21 11 25 25 S 1.71213 * 108.60819 * 0.02562 * 5 4 3 26 26 H 1.08997 * 109.47448 * 90.02353 * 1 2 3 27 27 H 1.09008 * 109.47222 * 210.02414 * 1 2 3 28 28 H 1.09000 * 109.47100 * 330.02021 * 1 2 3 29 29 H 1.09003 * 109.47400 * 209.97782 * 6 5 4 30 30 H 1.08997 * 109.47315 * 329.97450 * 6 5 4 31 31 H 1.08999 * 109.47742 * 300.00350 * 8 7 6 32 32 H 1.09006 * 109.46828 * 60.00532 * 8 7 6 33 33 H 1.09003 * 109.47082 * 210.00156 * 12 11 9 34 34 H 1.09004 * 109.46769 * 329.99857 * 12 11 9 35 35 H 0.96996 * 120.00727 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.46834 * 216.68228 * 21 11 9 37 37 H 1.09000 * 109.46641 * 336.68181 * 21 11 9 38 38 H 1.09000 * 109.47201 * 54.10999 * 22 21 11 39 39 H 1.09000 * 109.46890 * 60.00363 * 23 22 21 40 40 H 1.09007 * 109.46798 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47277 * 300.00241 * 23 22 21 42 42 H 1.08999 * 109.47444 * 304.71310 * 24 22 21 43 43 H 1.09002 * 109.47126 * 64.71222 * 24 22 21 44 44 H 1.08999 * 109.47313 * 184.71318 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0052 5 6 3.8936 -0.3874 0.0105 6 6 5.3232 -0.8641 0.0177 7 8 5.7698 -1.0101 1.3673 8 6 7.1205 -1.4608 1.4869 9 6 7.4832 -1.5793 2.9449 10 8 6.7002 -1.2146 3.7961 11 7 8.6778 -2.0907 3.3027 12 6 8.9839 -2.3162 4.7175 13 6 8.5549 -3.7068 5.1088 14 1 8.0993 -4.3574 4.3769 15 6 8.7430 -4.1481 6.4014 16 7 9.2972 -3.3558 7.2928 17 14 8.2104 -5.8716 6.8866 18 1 9.3332 -6.8177 6.6641 19 1 7.8279 -5.8859 8.3215 20 1 7.0467 -6.2813 6.0600 21 6 9.6702 -2.4210 2.2768 22 6 10.6603 -1.2633 2.1336 23 6 11.7795 -1.6657 1.1712 24 6 9.9326 -0.0347 1.5845 25 16 2.5061 -1.3905 0.0078 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 5.3884 -1.8250 -0.4926 30 1 5.9514 -0.1365 -0.4961 31 1 7.2227 -2.4343 1.0072 32 1 7.7863 -0.7458 1.0035 33 1 10.0565 -2.2080 4.8789 34 1 8.4495 -1.5863 5.3256 35 1 9.4299 -3.6664 8.2020 36 1 10.2066 -3.3241 2.5677 37 1 9.1666 -2.5882 1.3247 38 1 11.0869 -1.0274 3.1086 39 1 11.3530 -1.9017 0.1963 40 1 12.4847 -0.8408 1.0688 41 1 12.2980 -2.5411 1.5624 42 1 9.4356 -0.2944 0.6498 43 1 9.1910 0.3022 2.3088 44 1 10.6526 0.7634 1.4036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795749817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:11 Heat of formation + Delta-G solvation = -20.210592 kcal Electronic energy + Delta-G solvation = -25549.846608 eV Core-core repulsion = 21823.039437 eV Total energy + Delta-G solvation = -3726.807171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48294 -39.50843 -37.67724 -36.26532 -33.75184 -33.55676 -32.31170 -30.75752 -28.83661 -27.22045 -27.05559 -26.30831 -25.34242 -24.45426 -22.61617 -20.35682 -20.10022 -19.56454 -18.54243 -17.20420 -16.62180 -16.53860 -16.07192 -15.84745 -15.53407 -15.10831 -14.62871 -14.54610 -14.18702 -13.97486 -13.58487 -13.42056 -13.35905 -13.16769 -12.86734 -12.56881 -12.39190 -12.26049 -11.92649 -11.79480 -11.63988 -11.31694 -11.00706 -10.93951 -10.77377 -10.67733 -10.56728 -10.47616 -10.42680 -10.14257 -10.00304 -9.87174 -9.76468 -9.62500 -8.88638 -8.44504 -7.67501 -6.05252 -4.10317 0.12365 0.65730 1.12851 2.27378 3.19119 3.28939 3.34907 3.36724 3.41062 3.74603 4.13176 4.37600 4.46267 4.56586 4.74973 4.95854 4.98717 5.00292 5.04247 5.08086 5.19029 5.19769 5.26460 5.28909 5.33203 5.36378 5.50553 5.59350 5.66973 5.79829 5.91379 6.02358 6.13962 6.22713 6.41150 6.50369 6.79127 7.09646 7.44496 7.52381 7.91209 8.21926 8.33814 8.36240 8.88265 9.05712 9.54792 11.02804 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.003155 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.115775 B = 8872.315158 C =10725.787547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.022 4.022 3 N -0.263 5.263 4 N -0.239 5.239 5 C -0.016 4.016 6 C 0.141 3.859 7 O -0.353 6.353 8 C 0.035 3.965 9 C 0.510 3.490 10 O -0.520 6.520 11 N -0.594 5.594 12 C 0.248 3.752 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.114 3.886 22 C -0.118 4.118 23 C -0.142 4.142 24 C -0.150 4.150 25 S 0.197 5.803 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 2.351 -20.598 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.300 4.300 3 N -0.102 5.102 4 N -0.078 5.078 5 C -0.295 4.295 6 C 0.060 3.940 7 O -0.270 6.270 8 C -0.045 4.045 9 C 0.295 3.705 10 O -0.395 6.395 11 N -0.327 5.327 12 C 0.129 3.871 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.011 4.011 22 C -0.137 4.137 23 C -0.200 4.200 24 C -0.208 4.208 25 S 0.440 5.560 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.827 2.935 -19.747 21.444 hybrid contribution 0.056 -0.962 0.172 0.979 sum -7.771 1.973 -19.575 21.153 Atomic orbital electron populations 1.20400 0.83797 1.04952 1.04300 1.29325 1.04493 0.92145 1.04000 1.71481 0.96809 1.26791 1.15089 1.71419 1.06510 1.17051 1.12849 1.28698 1.02293 0.92719 1.05813 1.20647 0.86494 1.00544 0.86289 1.88102 1.28089 1.87981 1.22833 1.22753 0.83786 1.00207 0.97724 1.19758 0.82662 0.79064 0.89019 1.90709 1.49225 1.47682 1.51930 1.48135 1.13199 1.61667 1.09703 1.19281 0.96579 0.97144 0.74063 1.21433 1.40552 0.98922 0.95813 0.92455 1.24930 0.95117 0.97806 0.96201 1.69926 1.43506 1.36006 1.03804 0.86504 0.78897 0.84207 0.77853 1.20637 1.21074 1.19893 1.21589 0.90661 0.97671 0.91164 1.21580 0.96147 0.95787 1.00223 1.21762 0.97948 1.01409 0.98875 1.21990 1.00628 0.97798 1.00338 1.83713 0.97232 1.11199 1.63861 0.89066 0.89524 0.88687 0.90440 0.89546 0.90612 0.89714 0.94800 0.93735 0.92684 0.89863 0.91752 0.90176 0.92920 0.92768 0.92367 0.92997 0.92356 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.48 36.01 0.38 -0.08 16 2 C -0.02 -0.24 7.53 -13.30 -0.10 -0.34 16 3 N -0.26 -3.80 11.66 32.58 0.38 -3.42 16 4 N -0.24 -3.72 11.66 32.58 0.38 -3.34 16 5 C -0.02 -0.22 7.16 -13.30 -0.10 -0.31 16 6 C 0.14 1.66 6.53 36.00 0.24 1.89 16 7 O -0.35 -5.87 9.86 -55.09 -0.54 -6.41 16 8 C 0.03 0.53 4.77 36.01 0.17 0.70 16 9 C 0.51 10.81 6.53 -10.98 -0.07 10.74 16 10 O -0.52 -13.88 16.06 -14.30 -0.23 -14.11 16 11 N -0.59 -12.25 2.26 -175.06 -0.40 -12.65 16 12 C 0.25 6.41 5.22 -5.20 -0.03 6.39 16 13 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 14 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.11 1.73 4.89 -4.04 -0.02 1.71 16 22 C -0.12 -1.55 3.11 -90.62 -0.28 -1.84 16 23 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 24 C -0.15 -1.85 7.59 37.15 0.28 -1.57 16 25 S 0.20 2.01 23.04 -107.50 -2.48 -0.46 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.93 7.37 -51.93 -0.38 0.55 16 32 H 0.09 1.05 4.80 -51.93 -0.25 0.80 16 33 H 0.03 0.88 7.94 -51.93 -0.41 0.47 16 34 H 0.04 1.32 7.35 -51.93 -0.38 0.94 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 36 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 37 H 0.06 0.78 6.10 -51.93 -0.32 0.46 16 38 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.53 6.49 -51.93 -0.34 0.19 16 43 H 0.06 0.87 6.87 -51.93 -0.36 0.52 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -37.09 378.98 -7.69 -44.79 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -6.62 Total: -3.71 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 0.39 Total: 2.68 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 1.10 Total: -45.18 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.77 Total: -20.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.48 Total: -0.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.09 -7.69 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795749817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.575 kcal (2) G-P(sol) polarization free energy of solvation -37.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds