Wall clock time and date at job start Tue Mar 31 2020 16:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29414 * 125.69390 * 2 1 4 4 N 1.26398 * 116.47318 * 179.73675 * 3 2 1 5 5 C 1.29419 * 116.47559 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.69386 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.47306 * 89.97340 * 6 5 4 8 8 C 1.42898 * 113.99968 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46802 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00226 * 354.72571 * 9 8 7 11 11 N 1.34780 * 119.99740 * 174.72084 * 9 8 7 12 12 C 1.46502 * 119.99969 * 185.41172 * 11 9 8 13 13 C 1.50692 * 109.47228 * 90.00323 * 12 11 9 14 14 H 1.08005 * 120.00015 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00041 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00417 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99882 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47279 * 89.99616 * 17 15 13 19 19 H 1.48507 * 109.46843 * 209.99877 * 17 15 13 20 20 H 1.48508 * 109.47158 * 329.99353 * 17 15 13 21 21 C 1.46504 * 120.00199 * 5.41405 * 11 9 8 22 22 C 1.53001 * 109.46953 * 96.67967 * 21 11 9 23 23 C 1.53002 * 109.46604 * 174.10445 * 22 21 11 24 24 C 1.52994 * 109.47444 * 294.10560 * 22 21 11 25 25 S 1.71213 * 108.60819 * 0.02562 * 5 4 3 26 26 H 1.08997 * 109.47448 * 90.02353 * 1 2 3 27 27 H 1.09008 * 109.47222 * 210.02414 * 1 2 3 28 28 H 1.09000 * 109.47100 * 330.02021 * 1 2 3 29 29 H 1.09003 * 109.47400 * 209.97782 * 6 5 4 30 30 H 1.08997 * 109.47315 * 329.97450 * 6 5 4 31 31 H 1.08999 * 109.47742 * 300.00350 * 8 7 6 32 32 H 1.09006 * 109.46828 * 60.00532 * 8 7 6 33 33 H 1.09003 * 109.47082 * 210.00156 * 12 11 9 34 34 H 1.09004 * 109.46769 * 329.99857 * 12 11 9 35 35 H 0.96996 * 120.00727 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.46834 * 216.68228 * 21 11 9 37 37 H 1.09000 * 109.46641 * 336.68181 * 21 11 9 38 38 H 1.09000 * 109.47201 * 54.10999 * 22 21 11 39 39 H 1.09000 * 109.46890 * 60.00363 * 23 22 21 40 40 H 1.09007 * 109.46798 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47277 * 300.00241 * 23 22 21 42 42 H 1.08999 * 109.47444 * 304.71310 * 24 22 21 43 43 H 1.09002 * 109.47126 * 64.71222 * 24 22 21 44 44 H 1.08999 * 109.47313 * 184.71318 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0052 5 6 3.8936 -0.3874 0.0105 6 6 5.3232 -0.8641 0.0177 7 8 5.7698 -1.0101 1.3673 8 6 7.1205 -1.4608 1.4869 9 6 7.4832 -1.5793 2.9449 10 8 6.7002 -1.2146 3.7961 11 7 8.6778 -2.0907 3.3027 12 6 8.9839 -2.3162 4.7175 13 6 8.5549 -3.7068 5.1088 14 1 8.0993 -4.3574 4.3769 15 6 8.7430 -4.1481 6.4014 16 7 9.2972 -3.3558 7.2928 17 14 8.2104 -5.8716 6.8866 18 1 9.3332 -6.8177 6.6641 19 1 7.8279 -5.8859 8.3215 20 1 7.0467 -6.2813 6.0600 21 6 9.6702 -2.4210 2.2768 22 6 10.6603 -1.2633 2.1336 23 6 11.7795 -1.6657 1.1712 24 6 9.9326 -0.0347 1.5845 25 16 2.5061 -1.3905 0.0078 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 5.3884 -1.8250 -0.4926 30 1 5.9514 -0.1365 -0.4961 31 1 7.2227 -2.4343 1.0072 32 1 7.7863 -0.7458 1.0035 33 1 10.0565 -2.2080 4.8789 34 1 8.4495 -1.5863 5.3256 35 1 9.4299 -3.6664 8.2020 36 1 10.2066 -3.3241 2.5677 37 1 9.1666 -2.5882 1.3247 38 1 11.0869 -1.0274 3.1086 39 1 11.3530 -1.9017 0.1963 40 1 12.4847 -0.8408 1.0688 41 1 12.2980 -2.5411 1.5624 42 1 9.4356 -0.2944 0.6498 43 1 9.1910 0.3022 2.3088 44 1 10.6526 0.7634 1.4036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795749817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:10 Heat of formation + Delta-G solvation = -46.287157 kcal Electronic energy + Delta-G solvation = -25550.977372 eV Core-core repulsion = 21823.039437 eV Total energy + Delta-G solvation = -3727.937936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41093 -41.03519 -38.86144 -37.70394 -35.48826 -34.42972 -34.14677 -31.66970 -30.36066 -28.67072 -27.96347 -27.33462 -26.80963 -25.33096 -24.53433 -21.49722 -21.02169 -20.45066 -20.04682 -18.62132 -18.45575 -17.84546 -17.33304 -17.09898 -16.65301 -16.54237 -16.01769 -15.84392 -15.53071 -15.04552 -14.55412 -14.53360 -14.41579 -14.22380 -13.96701 -13.79697 -13.52398 -13.37774 -13.32735 -13.05112 -12.92380 -12.77434 -12.62247 -12.53598 -12.29240 -12.13770 -11.83047 -11.62766 -11.57319 -11.52627 -11.34237 -10.92514 -10.80160 -10.67003 -10.64702 -10.56146 -9.43441 -8.22788 -6.38225 -0.72993 -0.14694 0.26275 1.31418 1.36390 1.39994 1.49984 1.72921 1.99699 2.38071 2.72752 3.06789 3.15725 3.50594 3.65114 3.81288 3.88350 4.02690 4.08302 4.11747 4.18301 4.27536 4.30621 4.40854 4.52407 4.60236 4.69945 4.72454 4.81937 4.93125 4.99220 5.04327 5.05392 5.08886 5.22105 5.31048 5.41275 5.50838 5.57724 5.78216 5.91853 6.05056 6.69065 6.75287 7.26846 7.42888 7.44066 8.84617 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.003155 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.115775 B = 8872.315158 C =10725.787547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.021 4.021 3 N -0.306 5.306 4 N -0.278 5.278 5 C -0.044 4.044 6 C 0.136 3.864 7 O -0.394 6.394 8 C 0.050 3.950 9 C 0.497 3.503 10 O -0.592 6.592 11 N -0.595 5.595 12 C 0.264 3.736 13 C -0.543 4.543 14 H 0.058 0.942 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.970 3.030 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.106 3.894 22 C -0.115 4.115 23 C -0.134 4.134 24 C -0.148 4.148 25 S 0.248 5.752 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.023 0.977 34 H -0.009 1.009 35 H 0.267 0.733 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.021 0.979 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 0.106 -23.898 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.299 4.299 3 N -0.145 5.145 4 N -0.118 5.118 5 C -0.323 4.323 6 C 0.056 3.944 7 O -0.313 6.313 8 C -0.028 4.028 9 C 0.286 3.714 10 O -0.473 6.473 11 N -0.326 5.326 12 C 0.143 3.857 13 C -0.582 4.582 14 H 0.076 0.924 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.794 3.206 18 H -0.186 1.186 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.016 4.016 22 C -0.134 4.134 23 C -0.192 4.192 24 C -0.205 4.205 25 S 0.492 5.508 26 H 0.134 0.866 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.041 0.959 34 H 0.009 0.991 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.041 0.959 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.151 0.682 -23.113 24.517 hybrid contribution 0.114 -0.236 1.191 1.220 sum -8.037 0.446 -21.921 23.353 Atomic orbital electron populations 1.20682 0.80807 1.06034 1.06173 1.30055 1.06323 0.91903 1.01596 1.71430 0.96995 1.28602 1.17449 1.71361 1.07448 1.18814 1.14178 1.29054 1.04100 0.93014 1.06131 1.21020 0.85908 1.03140 0.84282 1.88038 1.28538 1.88501 1.26198 1.22666 0.84208 1.03266 0.92687 1.20943 0.81597 0.77306 0.91587 1.90665 1.51308 1.50698 1.54596 1.48099 1.14633 1.61234 1.08670 1.18677 0.94831 0.95035 0.77136 1.21725 1.40569 0.99584 0.96287 0.92370 1.25908 0.94954 1.02331 0.96139 1.70064 1.44517 1.38186 1.04244 0.85381 0.78969 0.78987 0.77275 1.18558 1.20917 1.19488 1.21984 0.90217 0.98153 0.91229 1.21522 0.96706 0.95538 0.99655 1.21708 0.96827 1.01634 0.99015 1.21979 1.00228 0.97705 1.00588 1.83422 0.95208 1.09581 1.62607 0.86605 0.87311 0.88660 0.86377 0.87850 0.86491 0.86585 0.95885 0.99095 0.92441 0.90618 0.87221 0.93749 0.90179 0.91784 0.92659 0.89765 0.95929 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.48 71.24 0.75 -0.05 16 2 C -0.02 -0.43 7.53 88.47 0.67 0.24 16 3 N -0.31 -8.88 11.66 -50.85 -0.59 -9.47 16 4 N -0.28 -8.71 11.66 -50.85 -0.59 -9.30 16 5 C -0.04 -1.12 7.16 88.46 0.63 -0.48 16 6 C 0.14 2.86 6.53 71.23 0.47 3.32 16 7 O -0.39 -12.62 9.86 -129.99 -1.28 -13.90 16 8 C 0.05 1.41 4.77 71.24 0.34 1.75 16 9 C 0.50 21.47 6.53 87.66 0.57 22.04 16 10 O -0.59 -33.48 16.06 15.96 0.26 -33.23 16 11 N -0.59 -25.12 2.26 -826.15 -1.87 -26.99 16 12 C 0.26 14.53 5.22 85.63 0.45 14.98 16 13 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 14 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 15 C 0.01 0.32 5.46 84.66 0.46 0.78 16 16 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 17 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 C 0.11 3.07 4.89 86.38 0.42 3.49 16 22 C -0.11 -2.89 3.11 -10.79 -0.03 -2.92 16 23 C -0.13 -2.34 9.19 71.98 0.66 -1.67 16 24 C -0.15 -3.37 7.59 71.98 0.55 -2.82 16 25 S 0.25 4.61 23.04 -56.49 -1.30 3.31 16 26 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.12 2.30 7.37 -2.39 -0.02 2.28 16 32 H 0.12 2.47 4.80 -2.38 -0.01 2.46 16 33 H 0.02 1.29 7.94 -2.39 -0.02 1.27 16 34 H -0.01 -0.59 7.35 -2.39 -0.02 -0.61 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.08 2.32 8.12 -2.39 -0.02 2.30 16 37 H 0.11 2.18 6.10 -2.39 -0.01 2.16 16 38 H 0.04 1.42 8.01 -2.39 -0.02 1.40 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.35 6.49 -2.39 -0.02 1.34 16 43 H 0.02 0.66 6.87 -2.39 -0.02 0.65 16 44 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -89.62 378.98 4.10 -85.52 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.00 Total: 6.57 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 6.17 Total: 7.48 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -2.77 Total: -102.67 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -1.03 Total: -47.13 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.30 Total: 3.31 kcal Total: -89.62 4.10 -85.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795749817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.228 kcal (2) G-P(sol) polarization free energy of solvation -89.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds