Wall clock time and date at job start Tue Mar 31 2020 16:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46949 * 2 1 4 4 C 1.38136 * 119.97459 * 100.27697 * 3 2 1 5 5 C 1.38838 * 119.95598 * 180.20624 * 4 3 2 6 6 N 1.40025 * 120.04763 * 179.78932 * 5 4 3 7 7 C 1.34773 * 120.00412 * 215.56357 * 6 5 4 8 8 O 1.21289 * 119.99653 * 355.23549 * 7 6 5 9 9 C 1.50697 * 120.00524 * 175.50572 * 7 6 5 10 10 C 1.50691 * 109.47650 * 180.02562 * 9 7 6 11 11 C 1.37638 * 120.12928 * 265.00541 * 10 9 7 12 12 C 1.38619 * 120.24791 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.50153 * 0.02562 * 12 11 10 14 14 C 1.37601 * 120.24792 * 0.02562 * 13 12 11 15 15 C 1.40694 * 120.12688 * 84.72568 * 10 9 7 16 16 C 1.41395 * 120.24578 * 359.97438 * 15 10 9 17 17 H 1.08004 * 119.99813 * 334.48594 * 16 15 10 18 18 C 1.39947 * 120.00542 * 154.47839 * 16 15 10 19 19 N 1.30827 * 119.99672 * 344.96233 * 18 16 15 20 20 Si 1.86797 * 120.00258 * 164.95196 * 18 16 15 21 21 H 1.48499 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47233 * 120.00430 * 20 18 16 23 23 H 1.48499 * 109.47285 * 240.00776 * 20 18 16 24 24 C 1.38869 * 119.90561 * 359.51808 * 5 4 3 25 25 C 1.38094 * 119.95850 * 0.25087 * 24 5 4 26 26 C 1.38453 * 119.98024 * 280.00180 * 3 2 1 27 27 F 1.35094 * 119.95700 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.47025 * 59.99570 * 1 2 3 29 29 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46974 * 299.99869 * 1 2 3 31 31 H 1.08996 * 109.47127 * 240.00521 * 2 1 3 32 32 H 1.08997 * 109.47618 * 119.99972 * 2 1 3 33 33 H 1.07998 * 120.02748 * 359.97438 * 4 3 2 34 34 H 0.97001 * 119.99561 * 35.56778 * 6 5 4 35 35 H 1.09001 * 109.46995 * 300.00674 * 9 7 6 36 36 H 1.09010 * 109.46556 * 59.99852 * 9 7 6 37 37 H 1.08000 * 119.87949 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.74623 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.87522 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.12395 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99849 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.02330 * 180.26699 * 24 5 4 43 43 H 1.08004 * 119.97889 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4636 2.0004 1.1774 5 6 2.9223 3.3108 1.1777 6 7 3.3558 3.9016 2.3709 7 6 3.1261 5.2102 2.5973 8 8 2.6217 5.8957 1.7332 9 6 3.5015 5.8230 3.9219 10 6 3.1421 7.2865 3.9183 11 6 4.0885 8.2294 3.5870 12 6 3.7604 9.5762 3.5823 13 6 2.4783 9.9894 3.9110 14 6 1.5165 9.0643 4.2464 15 6 1.8364 7.6938 4.2477 16 6 0.8542 6.7337 4.5834 17 1 0.9378 5.7230 4.2119 18 6 -0.2263 7.0928 5.3971 19 7 -0.1867 8.2060 6.0833 20 14 -1.7251 5.9831 5.5032 21 1 -1.5225 4.7935 4.6377 22 1 -1.9181 5.5449 6.9089 23 1 -2.9261 6.7283 5.0477 24 6 2.9558 4.0329 -0.0080 25 6 2.5282 3.4483 -1.1837 26 6 2.0665 2.1426 -1.1811 27 9 1.6500 1.5720 -2.3326 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.4406 1.4358 2.0978 34 1 3.8215 3.3690 3.0345 35 1 2.9603 5.3183 4.7222 36 1 4.5740 5.7122 4.0825 37 1 5.0904 7.9189 3.3298 38 1 4.5094 10.3093 3.3215 39 1 2.2337 11.0413 3.9037 40 1 0.5186 9.3884 4.5024 41 1 -0.9354 8.4548 6.6476 42 1 3.3163 5.0510 -0.0106 43 1 2.5537 4.0098 -2.1060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803444938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:07 Heat of formation + Delta-G solvation = -50.087083 kcal Electronic energy + Delta-G solvation = -26860.937346 eV Core-core repulsion = 22977.470720 eV Total energy + Delta-G solvation = -3883.466626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.83033 -40.29349 -38.56478 -37.32033 -34.85019 -33.69093 -33.65295 -31.81312 -30.03577 -29.48407 -28.84737 -26.68881 -25.03801 -24.22526 -22.71465 -21.88512 -20.95006 -20.12815 -19.43206 -17.60867 -17.37058 -17.07410 -16.76877 -15.99000 -15.62096 -15.44934 -14.78071 -14.62936 -14.38989 -14.04416 -13.84293 -13.70794 -13.44682 -13.39068 -13.25390 -12.81426 -12.72224 -12.61384 -12.04924 -11.91845 -11.76439 -11.58858 -11.23677 -11.18672 -11.09879 -11.01852 -10.93625 -10.71457 -10.40392 -9.96146 -9.53022 -9.41215 -9.31510 -9.19777 -8.89847 -7.91824 -7.34640 -7.32993 -6.75283 -4.38127 1.14078 1.22510 2.73686 2.90636 3.05769 3.06112 3.11180 3.24350 3.40001 3.67953 3.91664 4.30347 4.52704 4.63775 4.70533 4.94501 5.16508 5.21731 5.27081 5.35861 5.39191 5.59847 5.71169 5.71433 5.81810 5.88330 5.92824 6.02559 6.06520 6.21488 6.24550 6.31147 6.35382 6.36608 6.48585 6.56887 6.76309 7.04568 7.05851 7.27572 7.39876 7.58139 7.67277 7.89394 8.04080 8.10972 8.28204 8.58322 8.63859 8.88663 8.98488 10.17723 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.003665 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.900092 B = 7636.987461 C = 9123.923887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.099 4.099 4 C -0.124 4.124 5 C 0.155 3.845 6 N -0.687 5.687 7 C 0.514 3.486 8 O -0.498 6.498 9 C -0.068 4.068 10 C -0.186 4.186 11 C -0.080 4.080 12 C -0.239 4.239 13 C -0.106 4.106 14 C -0.159 4.159 15 C 0.129 3.871 16 C -0.455 4.455 17 H 0.073 0.927 18 C 0.077 3.923 19 N -0.794 5.794 20 Si 0.902 3.098 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.099 4.099 25 C -0.131 4.131 26 C 0.072 3.928 27 F -0.143 7.143 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.408 0.592 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.279 0.721 42 H 0.149 0.851 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -13.911 -6.531 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.145 4.145 5 C 0.060 3.940 6 N -0.334 5.334 7 C 0.303 3.697 8 O -0.370 6.370 9 C -0.108 4.108 10 C -0.188 4.188 11 C -0.098 4.098 12 C -0.259 4.259 13 C -0.125 4.125 14 C -0.178 4.178 15 C 0.126 3.874 16 C -0.485 4.485 17 H 0.092 0.908 18 C -0.141 4.141 19 N -0.420 5.420 20 Si 0.727 3.273 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.197 1.197 24 C -0.119 4.119 25 C -0.150 4.150 26 C 0.052 3.948 27 F -0.122 7.122 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.151 0.849 34 H 0.244 0.756 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.090 0.910 42 H 0.167 0.833 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.112 -13.217 -6.949 15.488 hybrid contribution -0.637 -0.693 0.256 0.975 sum 3.475 -13.910 -6.693 15.823 Atomic orbital electron populations 1.21748 0.94461 1.01801 1.02589 1.20444 0.96520 0.91715 1.03058 1.19632 1.01498 0.97115 0.91800 1.20664 1.01201 0.94836 0.97771 1.17831 0.97277 0.92376 0.86529 1.43887 1.59297 1.11671 1.18518 1.21592 0.77142 0.80086 0.90915 1.90684 1.40165 1.60251 1.45852 1.20273 1.01023 0.96184 0.93275 1.18995 0.94622 0.90886 1.14302 1.20298 0.96710 0.93285 0.99545 1.20316 0.96825 0.94707 1.14033 1.20700 0.94077 0.97433 1.00274 1.21369 0.99070 0.93008 1.04376 1.17340 0.90043 0.92556 0.87414 1.19510 1.05066 0.97636 1.26269 0.90841 1.25876 0.99205 0.95357 0.93637 1.69818 1.30685 1.21829 1.19673 0.86351 0.81286 0.81024 0.78654 1.18522 1.19957 1.19663 1.21214 0.99630 1.01352 0.89740 1.21039 1.00955 0.93337 0.99667 1.17457 1.03281 0.92466 0.81627 1.91443 1.88253 1.84904 1.47602 0.92438 0.92255 0.92257 0.90794 0.90607 0.84905 0.75617 0.88182 0.90153 0.89719 0.89635 0.89552 0.86228 0.90979 0.83328 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 37.16 0.37 -1.06 16 2 C -0.08 -0.77 5.79 -27.88 -0.16 -0.93 16 3 C -0.10 -1.19 5.14 -104.58 -0.54 -1.73 16 4 C -0.12 -1.50 9.59 -39.40 -0.38 -1.88 16 5 C 0.16 2.22 6.29 -83.66 -0.53 1.69 16 6 N -0.69 -9.56 5.34 -9.85 -0.05 -9.61 16 7 C 0.51 9.37 7.29 -10.99 -0.08 9.29 16 8 O -0.50 -11.15 13.52 5.55 0.08 -11.08 16 9 C -0.07 -1.24 5.18 -29.04 -0.15 -1.39 16 10 C -0.19 -4.31 4.43 -103.92 -0.46 -4.77 16 11 C -0.08 -1.79 9.66 -39.66 -0.38 -2.17 16 12 C -0.24 -5.46 10.05 -39.29 -0.39 -5.85 16 13 C -0.11 -2.56 10.02 -39.66 -0.40 -2.95 16 14 C -0.16 -4.19 8.69 -38.87 -0.34 -4.53 16 15 C 0.13 3.36 5.58 -106.83 -0.60 2.77 16 16 C -0.46 -11.75 8.16 -37.74 -0.31 -12.05 16 17 H 0.07 1.85 6.64 -52.48 -0.35 1.50 16 18 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 19 N -0.79 -20.23 10.84 55.55 0.60 -19.63 16 20 Si 0.90 18.75 29.59 -169.99 -5.03 13.72 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.10 -1.51 8.69 -39.40 -0.34 -1.85 16 25 C -0.13 -1.78 10.02 -39.54 -0.40 -2.17 16 26 C 0.07 0.95 7.24 -39.41 -0.29 0.66 16 27 F -0.14 -1.89 16.65 2.25 0.04 -1.85 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 32 H 0.08 0.60 8.00 -51.93 -0.42 0.18 16 33 H 0.13 1.28 8.03 -52.49 -0.42 0.86 16 34 H 0.41 4.09 8.82 -40.82 -0.36 3.73 16 35 H 0.10 1.79 7.07 -51.93 -0.37 1.42 16 36 H 0.08 1.19 8.05 -51.92 -0.42 0.77 16 37 H 0.08 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 3.25 6.11 -52.49 -0.32 2.93 16 41 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 42 H 0.15 2.50 6.28 -52.49 -0.33 2.17 16 43 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -30.14 366.05 -9.79 -39.94 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.49 Total: 10.10 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -5.46 Total: -27.10 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: 0.55 Total: -29.24 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.14 -9.79 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803444938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.148 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds