Wall clock time and date at job start Tue Mar 31 2020 16:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46949 * 2 1 4 4 C 1.38136 * 119.97459 * 100.27697 * 3 2 1 5 5 C 1.38838 * 119.95598 * 180.20624 * 4 3 2 6 6 N 1.40025 * 120.04763 * 179.78932 * 5 4 3 7 7 C 1.34773 * 120.00412 * 215.56357 * 6 5 4 8 8 O 1.21289 * 119.99653 * 355.23549 * 7 6 5 9 9 C 1.50697 * 120.00524 * 175.50572 * 7 6 5 10 10 C 1.50691 * 109.47650 * 180.02562 * 9 7 6 11 11 C 1.37638 * 120.12928 * 265.00541 * 10 9 7 12 12 C 1.38619 * 120.24791 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.50153 * 0.02562 * 12 11 10 14 14 C 1.37601 * 120.24792 * 0.02562 * 13 12 11 15 15 C 1.40694 * 120.12688 * 84.72568 * 10 9 7 16 16 C 1.41395 * 120.24578 * 359.97438 * 15 10 9 17 17 H 1.08004 * 119.99813 * 334.48594 * 16 15 10 18 18 C 1.39947 * 120.00542 * 154.47839 * 16 15 10 19 19 N 1.30827 * 119.99672 * 344.96233 * 18 16 15 20 20 Si 1.86797 * 120.00258 * 164.95196 * 18 16 15 21 21 H 1.48499 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47233 * 120.00430 * 20 18 16 23 23 H 1.48499 * 109.47285 * 240.00776 * 20 18 16 24 24 C 1.38869 * 119.90561 * 359.51808 * 5 4 3 25 25 C 1.38094 * 119.95850 * 0.25087 * 24 5 4 26 26 C 1.38453 * 119.98024 * 280.00180 * 3 2 1 27 27 F 1.35094 * 119.95700 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.47025 * 59.99570 * 1 2 3 29 29 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46974 * 299.99869 * 1 2 3 31 31 H 1.08996 * 109.47127 * 240.00521 * 2 1 3 32 32 H 1.08997 * 109.47618 * 119.99972 * 2 1 3 33 33 H 1.07998 * 120.02748 * 359.97438 * 4 3 2 34 34 H 0.97001 * 119.99561 * 35.56778 * 6 5 4 35 35 H 1.09001 * 109.46995 * 300.00674 * 9 7 6 36 36 H 1.09010 * 109.46556 * 59.99852 * 9 7 6 37 37 H 1.08000 * 119.87949 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.74623 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.87522 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.12395 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99849 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.02330 * 180.26699 * 24 5 4 43 43 H 1.08004 * 119.97889 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4636 2.0004 1.1774 5 6 2.9223 3.3108 1.1777 6 7 3.3558 3.9016 2.3709 7 6 3.1261 5.2102 2.5973 8 8 2.6217 5.8957 1.7332 9 6 3.5015 5.8230 3.9219 10 6 3.1421 7.2865 3.9183 11 6 4.0885 8.2294 3.5870 12 6 3.7604 9.5762 3.5823 13 6 2.4783 9.9894 3.9110 14 6 1.5165 9.0643 4.2464 15 6 1.8364 7.6938 4.2477 16 6 0.8542 6.7337 4.5834 17 1 0.9378 5.7230 4.2119 18 6 -0.2263 7.0928 5.3971 19 7 -0.1867 8.2060 6.0833 20 14 -1.7251 5.9831 5.5032 21 1 -1.5225 4.7935 4.6377 22 1 -1.9181 5.5449 6.9089 23 1 -2.9261 6.7283 5.0477 24 6 2.9558 4.0329 -0.0080 25 6 2.5282 3.4483 -1.1837 26 6 2.0665 2.1426 -1.1811 27 9 1.6500 1.5720 -2.3326 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.4406 1.4358 2.0978 34 1 3.8215 3.3690 3.0345 35 1 2.9603 5.3183 4.7222 36 1 4.5740 5.7122 4.0825 37 1 5.0904 7.9189 3.3298 38 1 4.5094 10.3093 3.3215 39 1 2.2337 11.0413 3.9037 40 1 0.5186 9.3884 4.5024 41 1 -0.9354 8.4548 6.6476 42 1 3.3163 5.0510 -0.0106 43 1 2.5537 4.0098 -2.1060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803444938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:06 Heat of formation + Delta-G solvation = -64.668235 kcal Electronic energy + Delta-G solvation = -26861.569632 eV Core-core repulsion = 22977.470720 eV Total energy + Delta-G solvation = -3884.098912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.87128 -41.54746 -39.89464 -38.95110 -35.99916 -35.50093 -34.72318 -33.44346 -31.34994 -31.03106 -30.00504 -28.25391 -26.84859 -25.13657 -23.80199 -23.06520 -22.79120 -21.50481 -20.90400 -19.11082 -18.67584 -18.38233 -17.95158 -17.29600 -17.11102 -16.63809 -16.29583 -16.17161 -15.59466 -15.33846 -15.12841 -14.88082 -14.83076 -14.66624 -14.39479 -14.33666 -13.90911 -13.74779 -13.47775 -13.37086 -13.05596 -12.90376 -12.76076 -12.74295 -12.63696 -12.49288 -12.11711 -11.97877 -11.81818 -11.32645 -11.21457 -11.16525 -11.03923 -10.74052 -9.91853 -9.21754 -9.17442 -9.02635 -8.58581 -6.29884 0.06048 0.20496 0.98128 1.13331 1.35669 1.48211 1.51782 1.69825 2.15152 2.19071 2.61026 2.79127 3.29251 3.63537 3.70450 3.77723 4.05812 4.14987 4.23007 4.29636 4.40306 4.42235 4.46463 4.58119 4.62187 4.66081 4.72763 4.81412 4.94241 4.96997 5.03772 5.07292 5.19742 5.20417 5.25355 5.32292 5.34052 5.38748 5.49065 5.55932 5.77960 5.95739 6.04227 6.17341 6.22975 6.41849 6.52210 6.75089 6.99367 7.12008 7.29232 8.36810 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.003665 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.900092 B = 7636.987461 C = 9123.923887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.096 4.096 4 C -0.114 4.114 5 C 0.137 3.863 6 N -0.666 5.666 7 C 0.517 3.483 8 O -0.548 6.548 9 C -0.066 4.066 10 C -0.188 4.188 11 C -0.089 4.089 12 C -0.243 4.243 13 C -0.118 4.118 14 C -0.195 4.195 15 C 0.097 3.903 16 C -0.480 4.480 17 H 0.072 0.928 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.272 1.272 24 C -0.119 4.119 25 C -0.137 4.137 26 C 0.063 3.937 27 F -0.144 7.144 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.429 0.571 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.285 0.715 42 H 0.126 0.874 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 -16.709 -6.236 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.098 4.098 4 C -0.134 4.134 5 C 0.043 3.957 6 N -0.314 5.314 7 C 0.307 3.693 8 O -0.424 6.424 9 C -0.106 4.106 10 C -0.190 4.190 11 C -0.108 4.108 12 C -0.262 4.262 13 C -0.136 4.136 14 C -0.215 4.215 15 C 0.094 3.906 16 C -0.510 4.510 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.453 5.453 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.184 1.184 23 H -0.197 1.197 24 C -0.139 4.139 25 C -0.157 4.157 26 C 0.044 3.956 27 F -0.122 7.122 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.182 0.818 34 H 0.268 0.732 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.144 0.856 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.001 -16.057 -6.637 18.080 hybrid contribution -0.801 0.179 0.077 0.825 sum 4.199 -15.878 -6.560 17.686 Atomic orbital electron populations 1.21751 0.94489 1.02850 1.01510 1.20546 0.96349 0.90074 1.04647 1.19993 1.00332 0.98327 0.91123 1.20945 0.99598 0.93804 0.99023 1.17999 0.98363 0.93327 0.86060 1.43523 1.58523 1.10410 1.18923 1.21457 0.76517 0.81158 0.90207 1.90681 1.42670 1.61809 1.47243 1.20296 1.03607 0.93250 0.93427 1.19494 0.93627 0.93845 1.12062 1.20754 0.98230 0.93074 0.98692 1.20728 0.96756 0.95916 1.12842 1.20956 0.94504 0.98054 1.00109 1.21374 0.98915 0.94195 1.07009 1.17727 0.91751 0.92618 0.88468 1.19660 1.06356 0.97660 1.27305 0.90968 1.26637 1.01503 0.96688 0.92964 1.69883 1.31693 1.23329 1.20364 0.85357 0.77491 0.78937 0.79186 1.18603 1.18352 1.19724 1.21113 1.01054 1.00720 0.91029 1.21132 1.00948 0.93886 0.99691 1.17625 1.03345 0.92468 0.82210 1.91441 1.88251 1.84814 1.47740 0.93940 0.90202 0.92913 0.90161 0.88113 0.81764 0.73171 0.87832 0.86053 0.86278 0.86803 0.87923 0.88394 0.90429 0.85605 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.89 71.98 0.71 -1.75 16 2 C -0.08 -1.25 5.79 29.85 0.17 -1.08 16 3 C -0.10 -2.09 5.14 -19.84 -0.10 -2.19 16 4 C -0.11 -2.44 9.59 22.39 0.21 -2.22 16 5 C 0.14 3.74 6.29 38.13 0.24 3.98 16 6 N -0.67 -17.30 5.34 -303.46 -1.62 -18.92 16 7 C 0.52 18.44 7.29 87.66 0.64 19.08 16 8 O -0.55 -24.99 13.52 -3.06 -0.04 -25.03 16 9 C -0.07 -2.32 5.18 29.10 0.15 -2.17 16 10 C -0.19 -8.66 4.43 -19.41 -0.09 -8.75 16 11 C -0.09 -3.87 9.66 22.22 0.21 -3.65 16 12 C -0.24 -10.86 10.05 22.46 0.23 -10.63 16 13 C -0.12 -5.76 10.02 22.22 0.22 -5.54 16 14 C -0.20 -10.72 8.69 22.73 0.20 -10.52 16 15 C 0.10 5.17 5.58 -21.29 -0.12 5.05 16 16 C -0.48 -25.38 8.16 23.46 0.19 -25.19 16 17 H 0.07 3.69 6.64 -2.91 -0.02 3.67 16 18 C 0.04 1.84 5.20 85.26 0.44 2.28 16 19 N -0.83 -43.43 10.84 21.83 0.24 -43.19 16 20 Si 0.97 38.82 29.59 68.60 2.03 40.85 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 C -0.12 -3.64 8.69 22.39 0.19 -3.44 16 25 C -0.14 -3.74 10.02 22.30 0.22 -3.51 16 26 C 0.06 1.61 7.24 22.38 0.16 1.77 16 27 F -0.14 -3.63 16.65 44.97 0.75 -2.88 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.21 7.94 -2.39 -0.02 1.19 16 32 H 0.10 1.13 8.00 -2.39 -0.02 1.11 16 33 H 0.16 2.45 8.03 -2.91 -0.02 2.42 16 34 H 0.43 7.28 8.82 -92.71 -0.82 6.46 16 35 H 0.10 3.57 7.07 -2.39 -0.02 3.55 16 36 H 0.12 3.18 8.05 -2.38 -0.02 3.16 16 37 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 39 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.10 5.66 6.11 -2.91 -0.02 5.64 16 41 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 42 H 0.13 4.43 6.28 -2.91 -0.02 4.41 16 43 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -68.31 366.05 5.48 -62.83 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.23 Total: 34.85 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 3.90 Total: -48.49 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -1.38 Total: -62.12 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.03 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.75 Total: -2.88 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -68.31 5.48 -62.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803444938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.842 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds