Wall clock time and date at job start Tue Mar 31 2020 15:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38097 * 126.31669 * 2 1 4 4 C 1.47277 * 126.41826 * 0.03861 * 3 2 1 5 5 O 1.21516 * 120.00072 * 0.02562 * 4 3 2 6 6 O 1.34757 * 120.00002 * 180.02562 * 4 3 2 7 7 C 1.45197 * 117.00192 * 175.18839 * 6 4 3 8 8 C 1.50703 * 112.84921 * 54.50204 * 7 6 4 9 9 H 1.07994 * 120.00243 * 244.95324 * 8 7 6 10 10 C 1.37880 * 119.99723 * 64.95125 * 8 7 6 11 11 N 1.31511 * 120.00170 * 354.96161 * 10 8 7 12 12 Si 1.86799 * 119.99940 * 174.96017 * 10 8 7 13 13 H 1.48497 * 109.47017 * 89.99744 * 12 10 8 14 14 H 1.48500 * 109.47194 * 210.00165 * 12 10 8 15 15 H 1.48505 * 109.47063 * 329.99980 * 12 10 8 16 16 C 1.53775 * 113.61699 * 283.19536 * 7 6 4 17 17 C 1.53773 * 87.08358 * 220.01758 * 16 7 6 18 18 C 1.53779 * 113.61542 * 185.69639 * 7 6 4 19 19 C 1.41422 * 107.15886 * 180.02562 * 3 2 1 20 20 N 1.30423 * 108.07496 * 359.71468 * 19 3 2 21 21 N 1.34588 * 126.32194 * 180.02562 * 2 1 3 22 22 C 1.39813 * 125.76626 * 359.97438 * 21 2 1 23 23 C 1.38942 * 119.69032 * 154.99789 * 22 21 2 24 24 C 1.38423 * 119.10499 * 180.24792 * 23 22 21 25 25 C 1.38800 * 118.48333 * 359.50671 * 24 23 22 26 26 C 1.38131 * 119.29052 * 0.47003 * 25 24 23 27 27 N 1.31892 * 120.84213 * 359.77106 * 26 25 24 28 28 H 1.09003 * 109.46793 * 269.97178 * 1 2 3 29 29 H 1.08995 * 109.47188 * 29.97574 * 1 2 3 30 30 H 1.09003 * 109.46892 * 149.97729 * 1 2 3 31 31 H 0.97000 * 120.00277 * 185.00148 * 11 10 8 32 32 H 1.09005 * 113.61339 * 334.56720 * 16 7 6 33 33 H 1.09003 * 113.61531 * 105.46392 * 16 7 6 34 34 H 1.08994 * 113.61915 * 270.88471 * 17 16 7 35 35 H 1.08999 * 113.69235 * 139.99037 * 17 16 7 36 36 H 1.09000 * 113.61955 * 254.53321 * 18 7 6 37 37 H 1.08999 * 113.61498 * 25.35481 * 18 7 6 38 38 H 1.08008 * 125.96166 * 180.02562 * 19 3 2 39 39 H 1.08001 * 120.44887 * 359.97438 * 23 22 21 40 40 H 1.07995 * 120.75489 * 179.72393 * 24 23 22 41 41 H 1.07994 * 120.35355 * 180.24386 * 25 24 23 42 42 H 1.07998 * 119.57942 * 179.74761 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3249 1.1127 0.0000 4 6 1.8878 2.5191 0.0008 5 8 0.7025 2.7870 0.0020 6 8 2.8022 3.5089 0.0002 7 6 2.3026 4.8680 -0.1075 8 6 1.2771 5.1996 0.9458 9 1 0.2588 5.4164 0.6588 10 6 1.6389 5.2262 2.2760 11 7 2.8518 4.8663 2.6349 12 14 0.4063 5.7736 3.5685 13 1 -0.3558 4.5960 4.0558 14 1 1.1267 6.4020 4.7049 15 1 -0.5320 6.7582 2.9721 16 6 1.8725 5.2551 -1.5322 17 6 2.5110 6.6287 -1.2672 18 6 3.4128 5.9237 -0.2403 19 6 3.6608 0.6486 -0.0006 20 7 3.6361 -0.6554 0.0052 21 7 2.3042 -1.0844 -0.0005 22 6 1.8742 -2.4147 -0.0006 23 6 2.7032 -3.4059 -0.5112 24 6 2.2632 -4.7184 -0.5100 25 6 1.0080 -4.9952 0.0137 26 6 0.2374 -3.9596 0.5053 27 7 0.6818 -2.7180 0.4862 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 3.0844 4.8153 3.5752 32 1 2.3760 4.6825 -2.3111 33 1 0.7914 5.2947 -1.6664 34 1 1.8256 7.3507 -0.8235 35 1 3.0546 7.0312 -2.1220 36 1 3.5754 6.5031 0.6685 37 1 4.3379 5.5336 -0.6647 38 1 4.5468 1.2663 -0.0004 39 1 3.6760 -3.1552 -0.9077 40 1 2.8839 -5.5092 -0.9044 41 1 0.6364 -6.0090 0.0333 42 1 -0.7416 -4.1692 0.9102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:19 Heat of formation + Delta-G solvation = 65.991381 kcal Electronic energy + Delta-G solvation = -27585.060278 eV Core-core repulsion = 23726.547153 eV Total energy + Delta-G solvation = -3858.513124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66319 -40.07651 -38.87043 -36.82910 -34.10144 -33.81038 -32.80690 -32.19035 -31.82283 -29.69141 -27.29141 -26.03672 -24.50896 -24.34306 -24.03364 -23.12324 -21.78738 -20.84453 -19.09888 -18.49335 -17.85372 -16.78632 -16.55315 -16.22728 -15.65936 -15.47086 -15.01482 -14.72990 -14.53941 -14.23192 -14.02154 -13.86072 -13.56070 -13.49433 -13.08061 -12.75725 -12.50181 -12.37123 -12.12125 -11.86592 -11.52091 -11.12020 -10.97923 -10.83053 -10.69930 -10.47573 -10.32698 -10.21379 -10.18114 -9.86671 -9.83721 -9.71993 -9.17966 -8.88071 -8.71588 -8.45101 -8.42201 -8.23835 -6.02206 -4.10416 0.47393 0.87724 1.88103 2.10653 2.50567 3.33171 3.39522 3.43271 3.45638 3.99211 4.21472 4.28491 4.40057 4.44749 4.56965 4.69857 4.75639 4.97709 5.13976 5.28140 5.32758 5.40861 5.58725 5.70767 5.78737 5.80496 5.84799 5.91365 5.99487 6.11928 6.15547 6.31592 6.37085 6.50942 6.54885 6.69083 6.74639 6.93941 7.06612 7.16067 7.35476 7.38790 7.63453 7.79960 7.87701 8.01437 8.48825 8.90691 9.38243 9.57261 11.02598 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.003398 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.665880 B = 8238.828085 C = 8908.576023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.171 3.829 3 C -0.256 4.256 4 C 0.541 3.459 5 O -0.504 6.504 6 O -0.344 6.344 7 C 0.242 3.758 8 C -0.502 4.502 9 H 0.067 0.933 10 C 0.075 3.925 11 N -0.866 5.866 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.271 1.271 16 C -0.162 4.162 17 C -0.131 4.131 18 C -0.107 4.107 19 C 0.122 3.878 20 N -0.303 5.303 21 N -0.326 5.326 22 C 0.373 3.627 23 C -0.159 4.159 24 C -0.056 4.056 25 C -0.187 4.187 26 C 0.129 3.871 27 N -0.497 5.497 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.205 0.795 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 -17.065 -6.872 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 C -0.268 4.268 4 C 0.383 3.617 5 O -0.393 6.393 6 O -0.260 6.260 7 C 0.208 3.792 8 C -0.540 4.540 9 H 0.085 0.915 10 C -0.130 4.130 11 N -0.503 5.503 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.196 1.196 16 C -0.199 4.199 17 C -0.168 4.168 18 C -0.145 4.145 19 C -0.067 4.067 20 N -0.120 5.120 21 N -0.102 5.102 22 C 0.146 3.854 23 C -0.182 4.182 24 C -0.082 4.082 25 C -0.208 4.208 26 C -0.029 4.029 27 N -0.210 5.210 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.222 0.778 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.607 -17.321 -6.384 18.470 hybrid contribution -0.487 0.231 0.676 0.865 sum -1.093 -17.090 -5.708 18.051 Atomic orbital electron populations 1.20671 0.85422 1.04013 1.04444 1.21714 0.95337 0.85141 0.93242 1.19800 0.92726 0.92801 1.21447 1.19310 0.84614 0.84154 0.73576 1.90704 1.18049 1.84472 1.46122 1.86474 1.39851 1.17882 1.81830 1.21174 0.92527 0.74767 0.90729 1.20905 0.95360 1.47400 0.90304 0.91457 1.25016 0.95008 0.94393 0.98623 1.70014 1.18264 1.45328 1.16669 0.86592 0.81379 0.79056 0.81102 1.20587 1.21195 1.19597 1.23562 1.00248 0.96966 0.99155 1.22508 0.99591 0.96293 0.98452 1.22886 0.96196 0.96975 0.98397 1.24427 0.98377 0.90862 0.92986 1.77251 0.93421 1.13745 1.27604 1.45364 1.05334 1.02565 1.56952 1.17729 0.90682 0.82100 0.94840 1.21703 1.01913 0.92473 1.02066 1.21528 0.95542 0.95835 0.95276 1.22174 0.95709 1.01217 1.01671 1.22605 0.99602 0.85907 0.94762 1.67100 1.14095 1.23244 1.16557 0.89242 0.87937 0.90944 0.92885 0.92097 0.92064 0.90270 0.93059 0.90576 0.92294 0.77823 0.83483 0.83897 0.84107 0.81638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 8.86 36.01 0.32 -1.13 16 2 C 0.17 3.19 6.95 -81.44 -0.57 2.63 16 3 C -0.26 -5.29 6.13 -105.06 -0.64 -5.93 16 4 C 0.54 13.13 7.60 34.40 0.26 13.39 16 5 O -0.50 -13.09 13.21 -19.28 -0.25 -13.35 16 6 O -0.34 -8.72 9.77 -40.65 -0.40 -9.12 16 7 C 0.24 6.09 0.50 -90.96 -0.05 6.04 16 8 C -0.50 -13.93 6.29 -34.44 -0.22 -14.15 16 9 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 10 C 0.07 2.08 5.24 -17.82 -0.09 1.99 16 11 N -0.87 -24.68 12.54 55.43 0.69 -23.99 16 12 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 C -0.16 -3.54 7.29 -25.93 -0.19 -3.73 16 17 C -0.13 -2.62 7.80 -25.92 -0.20 -2.83 16 18 C -0.11 -2.44 7.19 -25.92 -0.19 -2.62 16 19 C 0.12 2.21 11.87 -16.94 -0.20 2.01 16 20 N -0.30 -5.27 12.00 30.89 0.37 -4.90 16 21 N -0.33 -5.58 3.73 -8.01 -0.03 -5.61 16 22 C 0.37 5.36 7.28 -154.37 -1.12 4.24 16 23 C -0.16 -1.79 9.73 -39.25 -0.38 -2.17 16 24 C -0.06 -0.44 10.17 -39.31 -0.40 -0.84 16 25 C -0.19 -1.32 10.11 -39.41 -0.40 -1.72 16 26 C 0.13 1.17 11.18 -17.56 -0.20 0.97 16 27 N -0.50 -6.56 8.03 -12.29 -0.10 -6.66 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.10 1.82 6.51 -51.93 -0.34 1.48 16 30 H 0.07 1.04 6.86 -51.93 -0.36 0.69 16 31 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.37 8.09 -51.93 -0.42 0.95 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.88 7.63 -51.93 -0.40 1.48 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.21 3.21 8.06 -52.48 -0.42 2.79 16 39 H 0.15 1.60 7.90 -52.49 -0.41 1.18 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -33.36 360.38 -8.84 -42.21 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.28 Total: 3.03 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -4.26 Total: -3.84 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.94 Total: -41.15 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.65 Total: -22.47 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.36 -8.84 -42.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.197 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds