Wall clock time and date at job start Tue Mar 31 2020 15:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38097 * 126.31669 * 2 1 4 4 C 1.47277 * 126.41826 * 0.03861 * 3 2 1 5 5 O 1.21516 * 120.00072 * 0.02562 * 4 3 2 6 6 O 1.34757 * 120.00002 * 180.02562 * 4 3 2 7 7 C 1.45197 * 117.00192 * 175.18839 * 6 4 3 8 8 C 1.50703 * 112.84921 * 54.50204 * 7 6 4 9 9 H 1.07994 * 120.00243 * 244.95324 * 8 7 6 10 10 C 1.37880 * 119.99723 * 64.95125 * 8 7 6 11 11 N 1.31511 * 120.00170 * 354.96161 * 10 8 7 12 12 Si 1.86799 * 119.99940 * 174.96017 * 10 8 7 13 13 H 1.48497 * 109.47017 * 89.99744 * 12 10 8 14 14 H 1.48500 * 109.47194 * 210.00165 * 12 10 8 15 15 H 1.48505 * 109.47063 * 329.99980 * 12 10 8 16 16 C 1.53775 * 113.61699 * 283.19536 * 7 6 4 17 17 C 1.53773 * 87.08358 * 220.01758 * 16 7 6 18 18 C 1.53779 * 113.61542 * 185.69639 * 7 6 4 19 19 C 1.41422 * 107.15886 * 180.02562 * 3 2 1 20 20 N 1.30423 * 108.07496 * 359.71468 * 19 3 2 21 21 N 1.34588 * 126.32194 * 180.02562 * 2 1 3 22 22 C 1.39813 * 125.76626 * 359.97438 * 21 2 1 23 23 C 1.38942 * 119.69032 * 154.99789 * 22 21 2 24 24 C 1.38423 * 119.10499 * 180.24792 * 23 22 21 25 25 C 1.38800 * 118.48333 * 359.50671 * 24 23 22 26 26 C 1.38131 * 119.29052 * 0.47003 * 25 24 23 27 27 N 1.31892 * 120.84213 * 359.77106 * 26 25 24 28 28 H 1.09003 * 109.46793 * 269.97178 * 1 2 3 29 29 H 1.08995 * 109.47188 * 29.97574 * 1 2 3 30 30 H 1.09003 * 109.46892 * 149.97729 * 1 2 3 31 31 H 0.97000 * 120.00277 * 185.00148 * 11 10 8 32 32 H 1.09005 * 113.61339 * 334.56720 * 16 7 6 33 33 H 1.09003 * 113.61531 * 105.46392 * 16 7 6 34 34 H 1.08994 * 113.61915 * 270.88471 * 17 16 7 35 35 H 1.08999 * 113.69235 * 139.99037 * 17 16 7 36 36 H 1.09000 * 113.61955 * 254.53321 * 18 7 6 37 37 H 1.08999 * 113.61498 * 25.35481 * 18 7 6 38 38 H 1.08008 * 125.96166 * 180.02562 * 19 3 2 39 39 H 1.08001 * 120.44887 * 359.97438 * 23 22 21 40 40 H 1.07995 * 120.75489 * 179.72393 * 24 23 22 41 41 H 1.07994 * 120.35355 * 180.24386 * 25 24 23 42 42 H 1.07998 * 119.57942 * 179.74761 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3249 1.1127 0.0000 4 6 1.8878 2.5191 0.0008 5 8 0.7025 2.7870 0.0020 6 8 2.8022 3.5089 0.0002 7 6 2.3026 4.8680 -0.1075 8 6 1.2771 5.1996 0.9458 9 1 0.2588 5.4164 0.6588 10 6 1.6389 5.2262 2.2760 11 7 2.8518 4.8663 2.6349 12 14 0.4063 5.7736 3.5685 13 1 -0.3558 4.5960 4.0558 14 1 1.1267 6.4020 4.7049 15 1 -0.5320 6.7582 2.9721 16 6 1.8725 5.2551 -1.5322 17 6 2.5110 6.6287 -1.2672 18 6 3.4128 5.9237 -0.2403 19 6 3.6608 0.6486 -0.0006 20 7 3.6361 -0.6554 0.0052 21 7 2.3042 -1.0844 -0.0005 22 6 1.8742 -2.4147 -0.0006 23 6 2.7032 -3.4059 -0.5112 24 6 2.2632 -4.7184 -0.5100 25 6 1.0080 -4.9952 0.0137 26 6 0.2374 -3.9596 0.5053 27 7 0.6818 -2.7180 0.4862 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 3.0844 4.8153 3.5752 32 1 2.3760 4.6825 -2.3111 33 1 0.7914 5.2947 -1.6664 34 1 1.8256 7.3507 -0.8235 35 1 3.0546 7.0312 -2.1220 36 1 3.5754 6.5031 0.6685 37 1 4.3379 5.5336 -0.6647 38 1 4.5468 1.2663 -0.0004 39 1 3.6760 -3.1552 -0.9077 40 1 2.8839 -5.5092 -0.9044 41 1 0.6364 -6.0090 0.0333 42 1 -0.7416 -4.1692 0.9102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:18 Heat of formation + Delta-G solvation = 47.938141 kcal Electronic energy + Delta-G solvation = -27585.843125 eV Core-core repulsion = 23726.547153 eV Total energy + Delta-G solvation = -3859.295972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.93845 -41.07893 -40.63312 -38.64995 -35.92833 -34.94864 -34.30000 -33.71951 -33.08444 -30.74608 -28.75600 -28.01783 -26.29811 -25.64397 -24.89909 -24.63973 -23.29742 -22.01131 -20.64718 -20.39549 -19.25968 -18.24028 -17.59771 -17.35771 -17.08665 -16.89738 -16.73097 -16.55351 -15.96501 -15.67481 -15.50988 -15.23384 -14.85689 -14.76909 -14.28881 -14.07458 -14.00449 -13.84267 -13.44746 -13.34192 -12.96373 -12.94573 -12.91541 -12.74406 -12.17733 -12.13718 -12.06459 -11.78858 -11.56311 -11.48547 -11.06848 -11.00214 -10.75382 -10.66941 -10.42247 -10.35452 -10.10852 -9.49908 -8.13840 -6.26830 -0.49136 0.17026 0.61201 0.91109 1.05098 1.35543 1.37602 1.47098 2.33926 2.39692 2.51963 2.68689 3.15270 3.23365 3.38760 3.61752 3.86614 3.93039 4.00324 4.04657 4.08078 4.13341 4.20006 4.29242 4.37016 4.50916 4.55923 4.67618 4.71654 4.88739 4.92461 4.94198 4.99748 5.03445 5.13310 5.19831 5.26302 5.42773 5.45345 5.51754 5.70459 5.83975 5.88916 6.05358 6.17946 6.54275 6.74084 6.79398 7.38142 7.53890 8.90024 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.003398 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.665880 B = 8238.828085 C = 8908.576023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.172 3.828 3 C -0.293 4.293 4 C 0.536 3.464 5 O -0.534 6.534 6 O -0.354 6.354 7 C 0.215 3.785 8 C -0.512 4.512 9 H 0.048 0.952 10 C 0.033 3.967 11 N -0.890 5.890 12 Si 0.942 3.058 13 H -0.288 1.288 14 H -0.275 1.275 15 H -0.264 1.264 16 C -0.155 4.155 17 C -0.111 4.111 18 C -0.105 4.105 19 C 0.120 3.880 20 N -0.300 5.300 21 N -0.318 5.318 22 C 0.320 3.680 23 C -0.163 4.163 24 C -0.049 4.049 25 C -0.159 4.159 26 C 0.118 3.882 27 N -0.525 5.525 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.220 0.780 39 H 0.144 0.856 40 H 0.182 0.818 41 H 0.186 0.814 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 -19.933 -7.587 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.044 3.956 3 C -0.306 4.306 4 C 0.380 3.620 5 O -0.426 6.426 6 O -0.270 6.270 7 C 0.181 3.819 8 C -0.550 4.550 9 H 0.066 0.934 10 C -0.170 4.170 11 N -0.527 5.527 12 Si 0.768 3.232 13 H -0.214 1.214 14 H -0.200 1.200 15 H -0.188 1.188 16 C -0.193 4.193 17 C -0.148 4.148 18 C -0.143 4.143 19 C -0.069 4.069 20 N -0.117 5.117 21 N -0.094 5.094 22 C 0.097 3.903 23 C -0.185 4.185 24 C -0.075 4.075 25 C -0.179 4.179 26 C -0.040 4.040 27 N -0.238 5.238 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.236 0.764 39 H 0.162 0.838 40 H 0.200 0.800 41 H 0.203 0.797 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.780 -20.217 -7.107 21.444 hybrid contribution -0.512 0.794 0.876 1.289 sum -1.292 -19.423 -6.231 20.439 Atomic orbital electron populations 1.20576 0.84445 1.04170 1.04193 1.21912 0.96075 0.85362 0.92284 1.19656 0.94459 0.91408 1.25035 1.19833 0.84242 0.85250 0.72633 1.90664 1.18990 1.85127 1.47805 1.86446 1.40217 1.18233 1.82089 1.21457 0.93411 0.75098 0.91974 1.21015 0.95084 1.47421 0.91487 0.93388 1.25624 0.96530 0.94590 1.00239 1.70100 1.19440 1.46419 1.16791 0.85799 0.79662 0.78466 0.79275 1.21402 1.20047 1.18822 1.23501 0.99798 0.98302 0.97663 1.22426 0.98557 0.95105 0.98691 1.22863 0.96711 0.96338 0.98372 1.24595 0.97976 0.91192 0.93137 1.77175 0.94137 1.13151 1.27276 1.45585 1.04709 1.03632 1.55440 1.18065 0.92507 0.81179 0.98588 1.21864 1.01467 0.93431 1.01776 1.22024 0.96263 0.95002 0.94164 1.22706 0.94501 1.02648 0.98056 1.23289 1.01075 0.85051 0.94594 1.67005 1.13896 1.25651 1.17269 0.89564 0.89610 0.88753 0.93003 0.90526 0.93256 0.90719 0.89022 0.93016 0.90870 0.76384 0.83803 0.80045 0.79664 0.78717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.61 8.86 71.24 0.63 -1.97 16 2 C 0.17 6.65 6.95 42.10 0.29 6.94 16 3 C -0.29 -12.67 6.13 -20.15 -0.12 -12.79 16 4 C 0.54 27.23 7.60 70.20 0.53 27.77 16 5 O -0.53 -29.23 13.21 19.78 0.26 -28.96 16 6 O -0.35 -18.57 9.77 -56.68 -0.55 -19.13 16 7 C 0.21 11.07 0.50 -11.02 -0.01 11.06 16 8 C -0.51 -29.39 6.29 25.60 0.16 -29.23 16 9 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 10 C 0.03 1.86 5.24 84.66 0.44 2.30 16 11 N -0.89 -52.14 12.54 21.45 0.27 -51.87 16 12 Si 0.94 45.83 29.54 68.60 2.03 47.85 16 13 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 16 C -0.15 -6.80 7.29 31.12 0.23 -6.58 16 17 C -0.11 -4.30 7.80 31.12 0.24 -4.06 16 18 C -0.10 -4.82 7.19 31.12 0.22 -4.59 16 19 C 0.12 4.47 11.87 85.69 1.02 5.49 16 20 N -0.30 -10.59 12.00 -56.19 -0.67 -11.27 16 21 N -0.32 -11.05 3.73 -179.25 -0.67 -11.72 16 22 C 0.32 8.98 7.28 132.77 0.97 9.95 16 23 C -0.16 -3.37 9.73 22.48 0.22 -3.15 16 24 C -0.05 -0.56 10.17 22.45 0.23 -0.33 16 25 C -0.16 -1.46 10.11 22.38 0.23 -1.23 16 26 C 0.12 1.74 11.18 84.66 0.95 2.69 16 27 N -0.52 -13.14 8.03 -192.80 -1.55 -14.69 16 28 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.09 3.23 6.51 -2.39 -0.02 3.21 16 30 H 0.09 2.74 6.86 -2.39 -0.02 2.72 16 31 H 0.26 14.67 8.32 -92.71 -0.77 13.90 16 32 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 33 H 0.05 2.24 8.09 -2.39 -0.02 2.22 16 34 H 0.07 2.96 8.14 -2.39 -0.02 2.95 16 35 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.05 2.59 7.63 -2.39 -0.02 2.57 16 37 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.22 7.13 8.06 -2.91 -0.02 7.11 16 39 H 0.14 2.97 7.90 -2.91 -0.02 2.95 16 40 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 41 H 0.19 0.13 8.06 -2.91 -0.02 0.10 16 42 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -76.56 360.38 6.38 -70.17 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.04 Total: 17.37 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.23 Total: 2.25 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -2.62 Total: -89.56 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.29 Total: -48.09 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -76.56 6.38 -70.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.113 kcal (2) G-P(sol) polarization free energy of solvation -76.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds