Wall clock time and date at job start Tue Mar 31 2020 15:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36694 * 126.60020 * 2 1 4 4 C 1.47372 * 125.78012 * 359.96146 * 3 2 1 5 5 O 1.21522 * 119.99791 * 359.97438 * 4 3 2 6 6 O 1.34752 * 120.00201 * 180.02562 * 4 3 2 7 7 C 1.45193 * 117.00240 * 177.71069 * 6 4 3 8 8 C 1.50700 * 112.85021 * 65.17460 * 7 6 4 9 9 H 1.08002 * 119.99482 * 242.52360 * 8 7 6 10 10 C 1.37871 * 120.00329 * 62.52461 * 8 7 6 11 11 N 1.31514 * 119.99778 * 353.77166 * 10 8 7 12 12 Si 1.86793 * 120.00332 * 173.76805 * 10 8 7 13 13 H 1.48501 * 109.46959 * 90.00253 * 12 10 8 14 14 H 1.48498 * 109.47295 * 210.00075 * 12 10 8 15 15 H 1.48496 * 109.47289 * 330.00419 * 12 10 8 16 16 C 1.53782 * 113.61423 * 293.97467 * 7 6 4 17 17 C 1.53949 * 87.02366 * 220.04813 * 16 7 6 18 18 C 1.53785 * 113.61531 * 196.36995 * 7 6 4 19 19 N 1.34455 * 108.44069 * 179.97438 * 3 2 1 20 20 N 1.28749 * 109.56862 * 359.74851 * 19 3 2 21 21 N 1.35040 * 126.60559 * 179.97438 * 2 1 3 22 22 C 1.40220 * 126.60448 * 359.97438 * 21 2 1 23 23 C 1.38833 * 120.06512 * 145.00022 * 22 21 2 24 24 C 1.38126 * 119.93199 * 179.97438 * 23 22 21 25 25 C 1.38280 * 120.06596 * 359.97438 * 24 23 22 26 26 C 1.38281 * 120.13073 * 359.97438 * 25 24 23 27 27 C 1.38120 * 120.06686 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47099 * 270.02309 * 1 2 3 29 29 H 1.09001 * 109.47600 * 30.02303 * 1 2 3 30 30 H 1.09004 * 109.47198 * 150.02585 * 1 2 3 31 31 H 0.96999 * 120.00072 * 185.02527 * 11 10 8 32 32 H 1.09004 * 113.61438 * 334.57323 * 16 7 6 33 33 H 1.09008 * 113.61159 * 105.47155 * 16 7 6 34 34 H 1.09000 * 113.53809 * 270.81769 * 17 16 7 35 35 H 1.08996 * 113.74378 * 139.94385 * 17 16 7 36 36 H 1.08996 * 113.61511 * 254.52735 * 18 7 6 37 37 H 1.09002 * 113.61445 * 25.34964 * 18 7 6 38 38 H 1.07995 * 120.03110 * 359.97438 * 23 22 21 39 39 H 1.07995 * 119.96372 * 179.72751 * 24 23 22 40 40 H 1.07994 * 119.93428 * 180.02562 * 25 24 23 41 41 H 1.08000 * 119.95913 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.02932 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0974 0.0000 4 6 1.8759 2.5020 -0.0008 5 8 0.6890 2.7625 -0.0020 6 8 2.7842 3.4974 -0.0012 7 6 2.2737 4.8556 -0.0537 8 6 1.4850 5.2322 1.1740 9 1 0.4385 5.4847 1.0871 10 6 2.0993 5.2543 2.4081 11 7 3.3377 4.8300 2.5338 12 14 1.1727 5.8869 3.9015 13 1 0.4578 4.7608 4.5541 14 1 2.1329 6.4868 4.8624 15 1 0.1906 6.9161 3.4754 16 6 1.5595 5.1947 -1.3727 17 6 2.2415 6.5727 -1.2946 18 6 3.3338 5.8974 -0.4484 19 7 3.5996 0.6784 0.0006 20 7 3.6313 -0.6087 0.0062 21 7 2.3123 -1.0840 0.0005 22 6 1.9072 -2.4265 0.0016 23 6 2.6484 -3.3772 -0.6872 24 6 2.2471 -4.6989 -0.6838 25 6 1.1089 -5.0756 0.0051 26 6 0.3693 -4.1310 0.6929 27 6 0.7655 -2.8079 0.6932 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 3.7454 4.7769 3.4124 32 1 1.8915 4.5904 -2.2170 33 1 0.4740 5.2381 -1.2829 34 1 1.6614 7.3151 -0.7466 35 1 2.5992 6.9405 -2.2562 36 1 3.6787 6.5073 0.3866 37 1 4.1526 5.4853 -1.0382 38 1 3.5376 -3.0835 -1.2250 39 1 2.8208 -5.4381 -1.2230 40 1 0.7974 -6.1096 0.0066 41 1 -0.5195 -4.4283 1.2297 42 1 0.1877 -2.0708 1.2309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:12 Heat of formation + Delta-G solvation = 69.667545 kcal Electronic energy + Delta-G solvation = -27553.317640 eV Core-core repulsion = 23694.963926 eV Total energy + Delta-G solvation = -3858.353714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26763 -39.53650 -39.02862 -36.96497 -34.86979 -34.10651 -32.46557 -32.25604 -31.26827 -29.84847 -27.94467 -26.14212 -24.52476 -24.06887 -24.01192 -23.06481 -22.16938 -20.92893 -19.82660 -18.54724 -18.22992 -16.88868 -16.52430 -16.25694 -15.77163 -15.12546 -15.06386 -14.74283 -14.60289 -14.11787 -14.08866 -13.94569 -13.77683 -13.33411 -13.16777 -13.00976 -12.79991 -12.28440 -11.94669 -11.87250 -11.56261 -11.52290 -11.08899 -11.07792 -11.01087 -10.88009 -10.67978 -10.41508 -10.25949 -9.88663 -9.77675 -9.47748 -9.41786 -9.12630 -8.77330 -8.71928 -8.54045 -8.46873 -6.05805 -4.19437 0.42292 0.90166 1.55088 2.02208 2.12216 3.27162 3.28832 3.35120 3.38774 3.81956 4.01866 4.30930 4.36220 4.38197 4.47872 4.68128 4.74918 4.88268 4.92465 5.11463 5.19963 5.23509 5.42608 5.48100 5.57650 5.68849 5.77829 5.83221 5.88450 5.97231 5.99614 6.02594 6.09635 6.27402 6.33771 6.50110 6.56134 6.69880 6.76152 6.94695 7.15220 7.33670 7.57633 7.79580 7.91903 8.15903 8.34332 8.83807 9.19104 9.50568 10.97843 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003339 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.255460 B = 8384.244717 C = 8941.208896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.118 3.882 3 C -0.063 4.063 4 C 0.551 3.449 5 O -0.505 6.505 6 O -0.321 6.321 7 C 0.239 3.761 8 C -0.517 4.517 9 H 0.069 0.931 10 C 0.076 3.924 11 N -0.855 5.855 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.284 1.284 15 H -0.270 1.270 16 C -0.159 4.159 17 C -0.131 4.131 18 C -0.107 4.107 19 N -0.167 5.167 20 N -0.072 5.072 21 N -0.326 5.326 22 C 0.140 3.860 23 C -0.101 4.101 24 C -0.103 4.103 25 C -0.116 4.116 26 C -0.100 4.100 27 C -0.121 4.121 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 -17.589 -6.032 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.016 4.016 3 C -0.199 4.199 4 C 0.392 3.608 5 O -0.394 6.394 6 O -0.235 6.235 7 C 0.205 3.795 8 C -0.554 4.554 9 H 0.087 0.913 10 C -0.131 4.131 11 N -0.490 5.490 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.195 1.195 16 C -0.197 4.197 17 C -0.169 4.169 18 C -0.145 4.145 19 N -0.040 5.040 20 N -0.050 5.050 21 N -0.107 5.107 22 C 0.049 3.951 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.119 4.119 27 C -0.142 4.142 28 H 0.111 0.889 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.138 -17.704 -5.919 19.120 hybrid contribution -1.308 0.359 1.061 1.722 sum -5.446 -17.345 -4.858 18.817 Atomic orbital electron populations 1.20857 0.84582 1.05494 1.04663 1.21929 0.96190 0.85684 0.97762 1.20813 0.88470 0.94341 1.16300 1.18995 0.84596 0.83549 0.73616 1.90715 1.17493 1.84136 1.47048 1.86662 1.39071 1.17355 1.80389 1.21285 0.91457 0.74682 0.92029 1.20928 0.96392 1.47347 0.90710 0.91274 1.25098 0.94598 0.94292 0.99107 1.70053 1.12326 1.42964 1.23682 0.86588 0.79713 0.79365 0.82439 1.20602 1.21014 1.19468 1.23565 1.00436 0.96782 0.98883 1.22563 0.99150 0.96494 0.98670 1.22900 0.95992 0.97123 0.98489 1.74790 1.19208 1.02671 1.07348 1.82115 0.94868 1.04024 1.23995 1.47563 1.07260 1.04543 1.51295 1.17558 0.96866 0.80099 1.00616 1.21075 1.00154 0.92514 0.98401 1.21101 0.96818 0.95093 0.99104 1.21329 0.95072 1.00005 0.97023 1.21055 1.00099 0.91723 0.99025 1.21239 0.96234 0.97692 0.99025 0.88863 0.86578 0.90620 0.92667 0.92219 0.91701 0.90206 0.92975 0.90696 0.92122 0.84478 0.84761 0.85158 0.84674 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 8.06 36.01 0.29 -0.99 16 2 C 0.12 2.02 6.85 -81.74 -0.56 1.46 16 3 C -0.06 -1.35 7.02 -83.56 -0.59 -1.94 16 4 C 0.55 13.51 7.52 34.45 0.26 13.76 16 5 O -0.51 -12.37 13.22 -19.28 -0.25 -12.63 16 6 O -0.32 -8.60 9.76 -40.63 -0.40 -9.00 16 7 C 0.24 6.14 0.47 -90.96 -0.04 6.10 16 8 C -0.52 -14.29 7.08 -34.44 -0.24 -14.53 16 9 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 10 C 0.08 2.10 5.30 -17.82 -0.09 2.01 16 11 N -0.85 -24.77 12.79 55.43 0.71 -24.06 16 12 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 C -0.16 -3.53 6.57 -25.83 -0.17 -3.70 16 17 C -0.13 -2.66 7.81 -25.83 -0.20 -2.87 16 18 C -0.11 -2.52 7.28 -25.91 -0.19 -2.71 16 19 N -0.17 -3.66 12.39 32.84 0.41 -3.25 16 20 N -0.07 -1.37 13.57 60.35 0.82 -0.55 16 21 N -0.33 -5.26 3.75 -6.71 -0.03 -5.28 16 22 C 0.14 1.74 6.32 -83.58 -0.53 1.21 16 23 C -0.10 -1.06 9.79 -39.40 -0.39 -1.45 16 24 C -0.10 -0.78 10.04 -39.61 -0.40 -1.17 16 25 C -0.12 -0.77 10.04 -39.55 -0.40 -1.16 16 26 C -0.10 -0.73 10.04 -39.61 -0.40 -1.13 16 27 C -0.12 -1.20 8.36 -39.41 -0.33 -1.53 16 28 H 0.09 1.11 7.80 -51.93 -0.41 0.70 16 29 H 0.12 1.70 6.43 -51.93 -0.33 1.37 16 30 H 0.08 0.75 6.99 -51.93 -0.36 0.39 16 31 H 0.26 7.30 8.32 -40.82 -0.34 6.96 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.45 8.09 -51.92 -0.42 1.03 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.87 7.98 -51.93 -0.41 1.46 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.14 1.26 6.20 -52.49 -0.33 0.94 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -33.31 359.31 -7.51 -40.83 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.19 Total: 0.80 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.97 Total: -8.63 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 1.91 Total: -33.15 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.65 Total: -21.63 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.31 -7.51 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.493 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds