Wall clock time and date at job start Tue Mar 31 2020 15:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36694 * 126.60020 * 2 1 4 4 C 1.47372 * 125.78012 * 359.96146 * 3 2 1 5 5 O 1.21522 * 119.99791 * 359.97438 * 4 3 2 6 6 O 1.34752 * 120.00201 * 180.02562 * 4 3 2 7 7 C 1.45193 * 117.00240 * 177.71069 * 6 4 3 8 8 C 1.50700 * 112.85021 * 65.17460 * 7 6 4 9 9 H 1.08002 * 119.99482 * 242.52360 * 8 7 6 10 10 C 1.37871 * 120.00329 * 62.52461 * 8 7 6 11 11 N 1.31514 * 119.99778 * 353.77166 * 10 8 7 12 12 Si 1.86793 * 120.00332 * 173.76805 * 10 8 7 13 13 H 1.48501 * 109.46959 * 90.00253 * 12 10 8 14 14 H 1.48498 * 109.47295 * 210.00075 * 12 10 8 15 15 H 1.48496 * 109.47289 * 330.00419 * 12 10 8 16 16 C 1.53782 * 113.61423 * 293.97467 * 7 6 4 17 17 C 1.53949 * 87.02366 * 220.04813 * 16 7 6 18 18 C 1.53785 * 113.61531 * 196.36995 * 7 6 4 19 19 N 1.34455 * 108.44069 * 179.97438 * 3 2 1 20 20 N 1.28749 * 109.56862 * 359.74851 * 19 3 2 21 21 N 1.35040 * 126.60559 * 179.97438 * 2 1 3 22 22 C 1.40220 * 126.60448 * 359.97438 * 21 2 1 23 23 C 1.38833 * 120.06512 * 145.00022 * 22 21 2 24 24 C 1.38126 * 119.93199 * 179.97438 * 23 22 21 25 25 C 1.38280 * 120.06596 * 359.97438 * 24 23 22 26 26 C 1.38281 * 120.13073 * 359.97438 * 25 24 23 27 27 C 1.38120 * 120.06686 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47099 * 270.02309 * 1 2 3 29 29 H 1.09001 * 109.47600 * 30.02303 * 1 2 3 30 30 H 1.09004 * 109.47198 * 150.02585 * 1 2 3 31 31 H 0.96999 * 120.00072 * 185.02527 * 11 10 8 32 32 H 1.09004 * 113.61438 * 334.57323 * 16 7 6 33 33 H 1.09008 * 113.61159 * 105.47155 * 16 7 6 34 34 H 1.09000 * 113.53809 * 270.81769 * 17 16 7 35 35 H 1.08996 * 113.74378 * 139.94385 * 17 16 7 36 36 H 1.08996 * 113.61511 * 254.52735 * 18 7 6 37 37 H 1.09002 * 113.61445 * 25.34964 * 18 7 6 38 38 H 1.07995 * 120.03110 * 359.97438 * 23 22 21 39 39 H 1.07995 * 119.96372 * 179.72751 * 24 23 22 40 40 H 1.07994 * 119.93428 * 180.02562 * 25 24 23 41 41 H 1.08000 * 119.95913 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.02932 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0974 0.0000 4 6 1.8759 2.5020 -0.0008 5 8 0.6890 2.7625 -0.0020 6 8 2.7842 3.4974 -0.0012 7 6 2.2737 4.8556 -0.0537 8 6 1.4850 5.2322 1.1740 9 1 0.4385 5.4847 1.0871 10 6 2.0993 5.2543 2.4081 11 7 3.3377 4.8300 2.5338 12 14 1.1727 5.8869 3.9015 13 1 0.4578 4.7608 4.5541 14 1 2.1329 6.4868 4.8624 15 1 0.1906 6.9161 3.4754 16 6 1.5595 5.1947 -1.3727 17 6 2.2415 6.5727 -1.2946 18 6 3.3338 5.8974 -0.4484 19 7 3.5996 0.6784 0.0006 20 7 3.6313 -0.6087 0.0062 21 7 2.3123 -1.0840 0.0005 22 6 1.9072 -2.4265 0.0016 23 6 2.6484 -3.3772 -0.6872 24 6 2.2471 -4.6989 -0.6838 25 6 1.1089 -5.0756 0.0051 26 6 0.3693 -4.1310 0.6929 27 6 0.7655 -2.8079 0.6932 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 3.7454 4.7769 3.4124 32 1 1.8915 4.5904 -2.2170 33 1 0.4740 5.2381 -1.2829 34 1 1.6614 7.3151 -0.7466 35 1 2.5992 6.9405 -2.2562 36 1 3.6787 6.5073 0.3866 37 1 4.1526 5.4853 -1.0382 38 1 3.5376 -3.0835 -1.2250 39 1 2.8208 -5.4381 -1.2230 40 1 0.7974 -6.1096 0.0066 41 1 -0.5195 -4.4283 1.2297 42 1 0.1877 -2.0708 1.2309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:11 Heat of formation + Delta-G solvation = 50.267999 kcal Electronic energy + Delta-G solvation = -27554.158867 eV Core-core repulsion = 23694.963926 eV Total energy + Delta-G solvation = -3859.194941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.64821 -40.99638 -40.22252 -38.78888 -36.23888 -35.79715 -34.36388 -33.69169 -32.00596 -30.83231 -29.24864 -28.15799 -26.36380 -25.64517 -25.13850 -24.28458 -23.43448 -22.00568 -21.37950 -20.45424 -19.58029 -18.45826 -17.66682 -17.56455 -17.13884 -16.96878 -16.77792 -16.12409 -15.80883 -15.65308 -15.54006 -15.12296 -14.93414 -14.64536 -14.38046 -14.09003 -14.07088 -13.74301 -13.50436 -13.19581 -12.96239 -12.93566 -12.79612 -12.64383 -12.47444 -12.36052 -12.23548 -12.10053 -11.81734 -11.76181 -11.64391 -11.28662 -10.77797 -10.55790 -10.49499 -10.36517 -10.08915 -9.71153 -8.16243 -6.36413 -0.58430 0.25492 0.41505 0.55144 0.83452 1.36615 1.38088 1.49433 2.07633 2.24533 2.37899 2.62283 3.05954 3.12395 3.39871 3.49287 3.75163 3.80303 3.96056 4.01502 4.05785 4.16619 4.26637 4.32801 4.41114 4.43242 4.47843 4.48944 4.59865 4.71419 4.86927 4.93811 4.94602 5.01322 5.17679 5.23906 5.27439 5.38924 5.42659 5.43163 5.50247 5.63910 5.75735 5.89044 5.95985 6.34468 6.68041 6.71644 7.25892 7.40593 8.87007 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003339 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.255460 B = 8384.244717 C = 8941.208896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.136 3.864 3 C -0.104 4.104 4 C 0.545 3.455 5 O -0.516 6.516 6 O -0.345 6.345 7 C 0.212 3.788 8 C -0.527 4.527 9 H 0.059 0.941 10 C 0.029 3.971 11 N -0.888 5.888 12 Si 0.952 3.048 13 H -0.281 1.281 14 H -0.279 1.279 15 H -0.259 1.259 16 C -0.150 4.150 17 C -0.108 4.108 18 C -0.110 4.110 19 N -0.206 5.206 20 N -0.085 5.085 21 N -0.306 5.306 22 C 0.091 3.909 23 C -0.114 4.114 24 C -0.099 4.099 25 C -0.098 4.098 26 C -0.095 4.095 27 C -0.124 4.124 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 -20.351 -6.223 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.000 4.000 3 C -0.241 4.241 4 C 0.388 3.612 5 O -0.406 6.406 6 O -0.260 6.260 7 C 0.178 3.822 8 C -0.564 4.564 9 H 0.077 0.923 10 C -0.174 4.174 11 N -0.525 5.525 12 Si 0.777 3.223 13 H -0.207 1.207 14 H -0.204 1.204 15 H -0.183 1.183 16 C -0.188 4.188 17 C -0.146 4.146 18 C -0.148 4.148 19 N -0.079 5.079 20 N -0.063 5.063 21 N -0.086 5.086 22 C 0.001 3.999 23 C -0.134 4.134 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.145 4.145 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.180 0.820 40 H 0.186 0.814 41 H 0.186 0.814 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.409 -20.492 -6.122 22.326 hybrid contribution -0.665 0.896 1.087 1.558 sum -7.074 -19.595 -5.036 21.433 Atomic orbital electron populations 1.21007 0.81619 1.06532 1.05938 1.22362 0.97584 0.84686 0.95333 1.20663 0.89485 0.93904 1.20076 1.19386 0.84402 0.84375 0.73071 1.90670 1.17530 1.84647 1.47748 1.86630 1.40183 1.18212 1.80974 1.21595 0.92846 0.74708 0.93008 1.21103 0.96041 1.47298 0.91971 0.92273 1.25827 0.95358 0.94378 1.01826 1.70184 1.13818 1.44434 1.24053 0.85646 0.78699 0.78878 0.79088 1.20687 1.20406 1.18318 1.23474 0.99905 0.98029 0.97398 1.22482 0.96978 0.95352 0.99760 1.22899 0.96680 0.96814 0.98424 1.74733 1.20139 1.03997 1.09071 1.81963 0.96859 1.03003 1.24474 1.47731 1.05963 1.05972 1.48946 1.18070 0.99250 0.78403 1.04159 1.21188 0.99871 0.93696 0.98617 1.21461 0.97375 0.94028 0.98907 1.21843 0.93577 1.01692 0.94518 1.21489 1.00931 0.90390 0.98483 1.21438 0.95185 0.99248 0.98594 0.87191 0.88103 0.86846 0.92912 0.91323 0.92225 0.90072 0.89133 0.93002 0.91710 0.85682 0.82022 0.81398 0.81380 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.35 8.06 71.24 0.57 -1.78 16 2 C 0.14 4.75 6.85 41.70 0.29 5.03 16 3 C -0.10 -4.70 7.02 40.79 0.29 -4.41 16 4 C 0.55 28.00 7.52 70.23 0.53 28.52 16 5 O -0.52 -26.22 13.22 19.77 0.26 -25.96 16 6 O -0.35 -19.44 9.76 -56.63 -0.55 -19.99 16 7 C 0.21 11.23 0.47 -11.01 -0.01 11.23 16 8 C -0.53 -29.94 7.08 25.60 0.18 -29.76 16 9 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 10 C 0.03 1.67 5.30 84.65 0.45 2.12 16 11 N -0.89 -53.42 12.79 21.44 0.27 -53.15 16 12 Si 0.95 44.69 29.55 68.60 2.03 46.72 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 16 C -0.15 -6.72 6.57 31.18 0.20 -6.51 16 17 C -0.11 -4.31 7.81 31.18 0.24 -4.06 16 18 C -0.11 -5.30 7.28 31.12 0.23 -5.07 16 19 N -0.21 -9.63 12.39 -50.02 -0.62 -10.25 16 20 N -0.08 -3.40 13.57 37.02 0.50 -2.89 16 21 N -0.31 -10.01 3.75 -175.14 -0.66 -10.67 16 22 C 0.09 2.15 6.32 38.08 0.24 2.40 16 23 C -0.11 -2.24 9.79 22.39 0.22 -2.03 16 24 C -0.10 -1.15 10.04 22.25 0.22 -0.93 16 25 C -0.10 -0.80 10.04 22.29 0.22 -0.57 16 26 C -0.09 -0.94 10.04 22.25 0.22 -0.72 16 27 C -0.12 -2.12 8.36 22.38 0.19 -1.93 16 28 H 0.11 2.45 7.80 -2.39 -0.02 2.43 16 29 H 0.10 2.95 6.43 -2.39 -0.02 2.93 16 30 H 0.11 1.98 6.99 -2.39 -0.02 1.96 16 31 H 0.26 15.06 8.32 -92.71 -0.77 14.29 16 32 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 33 H 0.06 2.68 8.09 -2.38 -0.02 2.66 16 34 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.05 2.68 7.98 -2.39 -0.02 2.66 16 37 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 41 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 42 H 0.14 2.22 6.20 -2.91 -0.02 2.20 16 Total: -1.00 -77.76 359.31 6.58 -71.18 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.05 Total: 13.48 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 4.29 Total: -8.47 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -0.50 Total: -76.96 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.29 Total: -45.95 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -77.76 6.58 -71.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.453 kcal (2) G-P(sol) polarization free energy of solvation -77.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds