Wall clock time and date at job start Tue Mar 31 2020 15:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 110.83296 * 2 1 4 4 C 1.54701 * 110.94724 * 123.73585 * 2 1 3 5 5 O 1.43734 * 102.82760 * 92.73007 * 4 2 1 6 6 C 1.36001 * 109.34539 * 27.64837 * 5 4 2 7 7 C 1.39585 * 129.71340 * 161.39526 * 6 5 4 8 8 C 1.37464 * 120.43989 * 179.56225 * 7 6 5 9 9 C 1.39760 * 120.19804 * 359.97438 * 8 7 6 10 10 C 1.47582 * 120.26806 * 180.17720 * 9 8 7 11 11 O 1.21617 * 120.00034 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00355 * 0.02562 * 10 9 8 13 13 C 1.40530 * 120.00630 * 179.97438 * 12 10 9 14 14 C 1.40665 * 126.08219 * 359.68910 * 13 12 10 15 15 N 1.30904 * 108.38793 * 179.81697 * 14 13 12 16 16 N 1.40071 * 108.41224 * 0.44593 * 15 14 13 17 17 C 1.37312 * 126.06916 * 179.71668 * 16 15 14 18 18 H 1.08003 * 119.99900 * 180.02562 * 17 16 15 19 19 C 1.38987 * 120.00050 * 0.02562 * 17 16 15 20 20 N 1.31296 * 120.00341 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99820 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47445 * 59.99600 * 21 19 17 23 23 H 1.48504 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47225 * 299.99499 * 21 19 17 25 25 C 1.35696 * 126.08658 * 180.02562 * 13 12 10 26 26 C 1.39819 * 119.46191 * 0.20415 * 9 8 7 27 27 C 1.37234 * 119.88909 * 359.97438 * 26 9 8 28 28 H 1.08998 * 109.46951 * 60.70036 * 1 2 3 29 29 H 1.09005 * 109.46741 * 180.69683 * 1 2 3 30 30 H 1.08996 * 109.47202 * 300.69919 * 1 2 3 31 31 H 1.09002 * 109.47209 * 59.30618 * 3 2 1 32 32 H 1.09009 * 109.46639 * 179.29600 * 3 2 1 33 33 H 1.08989 * 109.47459 * 299.29661 * 3 2 1 34 34 H 1.09004 * 110.73961 * 211.06201 * 4 2 1 35 35 H 1.08999 * 110.74407 * 334.20533 * 4 2 1 36 36 H 1.08003 * 119.78057 * 359.57710 * 7 6 5 37 37 H 1.07992 * 119.90517 * 180.02562 * 8 7 6 38 38 H 0.97003 * 119.99732 * 0.02562 * 12 10 9 39 39 H 1.08000 * 125.80467 * 0.02562 * 14 13 12 40 40 H 0.96992 * 120.00195 * 180.02562 * 20 19 17 41 41 H 1.07998 * 126.24832 * 0.02562 * 25 13 12 42 42 H 1.08004 * 120.06916 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0742 1.4300 0.0000 4 6 2.0831 -0.8024 1.2015 5 8 2.2596 -2.1188 0.6520 6 6 2.4853 -2.0221 -0.6856 7 6 3.0434 -2.9511 -1.5654 8 6 3.1758 -2.6534 -2.9008 9 6 2.7513 -1.4151 -3.3904 10 6 2.8891 -1.0953 -4.8246 11 8 2.5185 -0.0161 -5.2453 12 7 3.4257 -1.9992 -5.6681 13 6 3.5565 -1.6949 -7.0338 14 6 3.1664 -0.4954 -7.6564 15 7 3.4496 -0.5809 -8.9316 16 7 4.0198 -1.8370 -9.1748 17 6 4.4465 -2.3091 -10.3916 18 1 4.8733 -3.2983 -10.4674 19 6 4.3293 -1.5140 -11.5255 20 7 3.8100 -0.3116 -11.4334 21 14 4.9092 -2.1566 -13.1808 22 1 4.1539 -3.3877 -13.5262 23 1 4.6749 -1.1242 -14.2223 24 1 6.3592 -2.4690 -13.1102 25 6 4.0756 -2.5085 -7.9877 26 6 2.1954 -0.4815 -2.5104 27 6 2.0710 -0.7871 -1.1783 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0277 0.0125 30 1 -0.3633 0.5246 0.8836 31 1 1.7132 1.9562 0.8837 32 1 3.1639 1.4040 0.0126 33 1 1.7335 1.9484 -0.8961 34 1 3.0366 -0.3918 1.5338 35 1 1.3640 -0.8160 2.0205 36 1 3.3731 -3.9103 -1.1944 37 1 3.6084 -3.3787 -3.5738 38 1 3.7209 -2.8601 -5.3326 39 1 2.7137 0.3532 -7.1652 40 1 3.7278 0.2431 -12.2248 41 1 4.4622 -3.5054 -7.8356 42 1 1.8637 0.4782 -2.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811887060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:21 Heat of formation + Delta-G solvation = 43.808567 kcal Electronic energy + Delta-G solvation = -26474.305914 eV Core-core repulsion = 22614.830871 eV Total energy + Delta-G solvation = -3859.475043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66016 -39.95218 -38.81689 -36.96651 -35.46924 -34.24989 -33.16732 -30.66967 -30.43543 -29.99778 -27.72407 -27.64046 -26.85671 -25.03470 -23.59587 -23.01827 -21.04312 -20.50696 -19.89077 -19.35838 -17.74692 -17.34379 -17.03176 -16.48913 -16.20351 -15.44557 -15.09732 -14.86691 -14.55617 -14.44209 -14.14929 -13.88206 -13.72295 -13.45255 -13.22303 -13.20508 -13.05214 -12.89072 -12.71817 -12.24900 -11.91280 -11.75684 -11.65874 -11.41326 -11.28620 -11.23529 -11.01055 -10.95320 -10.72391 -10.55354 -10.14495 -9.24977 -9.15205 -9.12892 -8.79542 -8.35758 -8.04149 -6.67626 -6.54602 -4.21298 0.80201 1.16825 2.82196 2.97332 3.05395 3.07457 3.09547 3.56041 3.56628 3.87488 3.91645 3.94917 4.22912 4.47866 4.52149 4.57889 4.72492 4.79201 4.99774 5.02932 5.03364 5.05590 5.12502 5.20072 5.28821 5.37998 5.47047 5.50593 5.54600 5.81102 5.85569 5.90766 6.01621 6.17669 6.21913 6.27325 6.30748 6.49398 6.90365 6.92855 6.97609 7.14129 7.25383 7.86950 8.19412 8.29252 8.64507 8.86799 9.38988 9.68292 10.41359 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.035376 B = 0.002224 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.302420 B =12586.500947 C =13183.879672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 C -0.138 4.138 4 C 0.058 3.942 5 O -0.302 6.302 6 C 0.123 3.877 7 C -0.145 4.145 8 C -0.054 4.054 9 C -0.146 4.146 10 C 0.544 3.456 11 O -0.535 6.535 12 N -0.617 5.617 13 C -0.059 4.059 14 C -0.032 4.032 15 N -0.261 5.261 16 N -0.142 5.142 17 C -0.323 4.323 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.770 5.770 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.084 4.084 26 C -0.008 4.008 27 C -0.173 4.173 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.396 0.604 39 H 0.177 0.823 40 H 0.275 0.725 41 H 0.146 0.854 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 -2.945 22.699 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.017 4.017 5 O -0.215 6.215 6 C 0.077 3.923 7 C -0.164 4.164 8 C -0.073 4.073 9 C -0.150 4.150 10 C 0.331 3.669 11 O -0.414 6.414 12 N -0.259 5.259 13 C -0.165 4.165 14 C -0.207 4.207 15 N -0.092 5.092 16 N 0.091 4.909 17 C -0.455 4.455 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.396 5.396 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.235 4.235 26 C -0.027 4.027 27 C -0.174 4.174 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.230 0.770 39 H 0.193 0.807 40 H 0.086 0.914 41 H 0.163 0.837 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.895 -1.559 21.257 21.509 hybrid contribution 0.462 -1.175 0.297 1.297 sum -2.433 -2.734 21.553 21.862 Atomic orbital electron populations 1.21803 0.92228 1.02579 1.02673 1.20799 0.96910 0.96101 0.91387 1.21786 1.01276 0.93599 1.02825 1.24011 1.01577 0.80026 0.96112 1.86768 1.86421 1.29911 1.18427 1.19816 0.93957 0.94622 0.83880 1.20121 1.04131 1.00114 0.92003 1.21051 0.96308 0.95559 0.94412 1.19869 1.05713 0.95508 0.93881 1.17849 0.79507 0.84559 0.84952 1.90671 1.49944 1.23425 1.77354 1.42393 1.59717 1.17467 1.06333 1.17251 1.18366 0.98447 0.82423 1.24133 1.06353 0.98350 0.91868 1.78256 1.18698 0.98545 1.13672 1.44543 1.33214 1.08596 1.04593 1.19823 1.41828 1.02130 0.81732 0.86656 1.25644 0.95884 0.95149 1.00455 1.70206 1.32183 1.06835 1.30413 0.85895 0.79540 0.78906 0.79802 1.19162 1.20144 1.19160 1.21257 1.16006 0.99645 0.86607 1.20293 0.93396 0.99068 0.89969 1.20572 1.05431 0.96442 0.94956 0.91500 0.92100 0.91804 0.91855 0.91990 0.91358 0.90278 0.87536 0.84924 0.84637 0.77036 0.80659 0.91402 0.83669 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.61 37.16 0.32 -0.72 16 2 C -0.05 -0.44 1.03 -154.28 -0.16 -0.60 16 3 C -0.14 -1.01 8.53 37.16 0.32 -0.69 16 4 C 0.06 0.44 7.09 38.05 0.27 0.71 16 5 O -0.30 -3.22 11.09 -19.74 -0.22 -3.44 16 6 C 0.12 1.41 7.05 -38.69 -0.27 1.14 16 7 C -0.15 -1.54 10.04 -39.36 -0.40 -1.94 16 8 C -0.05 -0.62 9.52 -39.29 -0.37 -0.99 16 9 C -0.15 -2.09 5.88 -104.93 -0.62 -2.70 16 10 C 0.54 10.00 7.74 -12.45 -0.10 9.90 16 11 O -0.54 -11.78 13.50 5.26 0.07 -11.71 16 12 N -0.62 -11.25 5.41 -10.92 -0.06 -11.31 16 13 C -0.06 -1.38 6.90 -83.86 -0.58 -1.96 16 14 C -0.03 -0.84 10.85 -17.03 -0.18 -1.03 16 15 N -0.26 -7.66 10.40 30.80 0.32 -7.34 16 16 N -0.14 -3.92 3.74 -11.41 -0.04 -3.96 16 17 C -0.32 -8.57 10.25 -14.82 -0.15 -8.72 16 18 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 19 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 20 N -0.77 -21.64 11.81 55.49 0.66 -20.98 16 21 Si 0.93 18.97 29.55 -169.99 -5.02 13.94 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.08 -1.99 11.49 -16.38 -0.19 -2.18 16 26 C -0.01 -0.11 9.46 -39.36 -0.37 -0.48 16 27 C -0.17 -1.97 5.04 -104.12 -0.52 -2.49 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.47 8.13 -51.92 -0.42 0.05 16 33 H 0.07 0.54 8.14 -51.94 -0.42 0.12 16 34 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 35 H 0.11 0.57 7.93 -51.93 -0.41 0.16 16 36 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.14 1.21 6.40 -52.49 -0.34 0.87 16 38 H 0.40 5.53 6.86 -40.82 -0.28 5.25 16 39 H 0.18 4.65 5.91 -52.49 -0.31 4.34 16 40 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 42 H 0.14 1.88 7.66 -52.48 -0.40 1.48 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -34.25 355.56 -7.12 -41.37 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.08 Total: 9.75 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -3.10 Total: -11.68 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.87 Total: -43.60 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.15 Total: -15.15 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.25 -7.12 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811887060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.181 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds