Wall clock time and date at job start Tue Mar 31 2020 15:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 110.83296 * 2 1 4 4 C 1.54701 * 110.94724 * 123.73585 * 2 1 3 5 5 O 1.43734 * 102.82760 * 92.73007 * 4 2 1 6 6 C 1.36001 * 109.34539 * 27.64837 * 5 4 2 7 7 C 1.39585 * 129.71340 * 161.39526 * 6 5 4 8 8 C 1.37464 * 120.43989 * 179.56225 * 7 6 5 9 9 C 1.39760 * 120.19804 * 359.97438 * 8 7 6 10 10 C 1.47582 * 120.26806 * 180.17720 * 9 8 7 11 11 O 1.21617 * 120.00034 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00355 * 0.02562 * 10 9 8 13 13 C 1.40530 * 120.00630 * 179.97438 * 12 10 9 14 14 C 1.40665 * 126.08219 * 359.68910 * 13 12 10 15 15 N 1.30904 * 108.38793 * 179.81697 * 14 13 12 16 16 N 1.40071 * 108.41224 * 0.44593 * 15 14 13 17 17 C 1.37312 * 126.06916 * 179.71668 * 16 15 14 18 18 H 1.08003 * 119.99900 * 180.02562 * 17 16 15 19 19 C 1.38987 * 120.00050 * 0.02562 * 17 16 15 20 20 N 1.31296 * 120.00341 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99820 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47445 * 59.99600 * 21 19 17 23 23 H 1.48504 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47225 * 299.99499 * 21 19 17 25 25 C 1.35696 * 126.08658 * 180.02562 * 13 12 10 26 26 C 1.39819 * 119.46191 * 0.20415 * 9 8 7 27 27 C 1.37234 * 119.88909 * 359.97438 * 26 9 8 28 28 H 1.08998 * 109.46951 * 60.70036 * 1 2 3 29 29 H 1.09005 * 109.46741 * 180.69683 * 1 2 3 30 30 H 1.08996 * 109.47202 * 300.69919 * 1 2 3 31 31 H 1.09002 * 109.47209 * 59.30618 * 3 2 1 32 32 H 1.09009 * 109.46639 * 179.29600 * 3 2 1 33 33 H 1.08989 * 109.47459 * 299.29661 * 3 2 1 34 34 H 1.09004 * 110.73961 * 211.06201 * 4 2 1 35 35 H 1.08999 * 110.74407 * 334.20533 * 4 2 1 36 36 H 1.08003 * 119.78057 * 359.57710 * 7 6 5 37 37 H 1.07992 * 119.90517 * 180.02562 * 8 7 6 38 38 H 0.97003 * 119.99732 * 0.02562 * 12 10 9 39 39 H 1.08000 * 125.80467 * 0.02562 * 14 13 12 40 40 H 0.96992 * 120.00195 * 180.02562 * 20 19 17 41 41 H 1.07998 * 126.24832 * 0.02562 * 25 13 12 42 42 H 1.08004 * 120.06916 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0742 1.4300 0.0000 4 6 2.0831 -0.8024 1.2015 5 8 2.2596 -2.1188 0.6520 6 6 2.4853 -2.0221 -0.6856 7 6 3.0434 -2.9511 -1.5654 8 6 3.1758 -2.6534 -2.9008 9 6 2.7513 -1.4151 -3.3904 10 6 2.8891 -1.0953 -4.8246 11 8 2.5185 -0.0161 -5.2453 12 7 3.4257 -1.9992 -5.6681 13 6 3.5565 -1.6949 -7.0338 14 6 3.1664 -0.4954 -7.6564 15 7 3.4496 -0.5809 -8.9316 16 7 4.0198 -1.8370 -9.1748 17 6 4.4465 -2.3091 -10.3916 18 1 4.8733 -3.2983 -10.4674 19 6 4.3293 -1.5140 -11.5255 20 7 3.8100 -0.3116 -11.4334 21 14 4.9092 -2.1566 -13.1808 22 1 4.1539 -3.3877 -13.5262 23 1 4.6749 -1.1242 -14.2223 24 1 6.3592 -2.4690 -13.1102 25 6 4.0756 -2.5085 -7.9877 26 6 2.1954 -0.4815 -2.5104 27 6 2.0710 -0.7871 -1.1783 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0277 0.0125 30 1 -0.3633 0.5246 0.8836 31 1 1.7132 1.9562 0.8837 32 1 3.1639 1.4040 0.0126 33 1 1.7335 1.9484 -0.8961 34 1 3.0366 -0.3918 1.5338 35 1 1.3640 -0.8160 2.0205 36 1 3.3731 -3.9103 -1.1944 37 1 3.6084 -3.3787 -3.5738 38 1 3.7209 -2.8601 -5.3326 39 1 2.7137 0.3532 -7.1652 40 1 3.7278 0.2431 -12.2248 41 1 4.4622 -3.5054 -7.8356 42 1 1.8637 0.4782 -2.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811887060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:20 Heat of formation + Delta-G solvation = 21.610236 kcal Electronic energy + Delta-G solvation = -26475.268506 eV Core-core repulsion = 22614.830871 eV Total energy + Delta-G solvation = -3860.437635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.48813 -41.70847 -40.38469 -38.05023 -36.21096 -35.94918 -34.99438 -32.31824 -31.56830 -31.24000 -29.41376 -28.30093 -27.52037 -26.87263 -24.85398 -23.89318 -22.86927 -21.89105 -21.25444 -20.70581 -19.34862 -18.47528 -18.19704 -17.51974 -17.37264 -17.00251 -16.55935 -16.15980 -16.07532 -15.51595 -15.24531 -15.09578 -14.85901 -14.79658 -14.60039 -14.55406 -13.89878 -13.78658 -13.68033 -13.46996 -13.30581 -12.96390 -12.86937 -12.85284 -12.72190 -12.39423 -12.13425 -11.94297 -11.86991 -11.73607 -11.50741 -11.00800 -10.87789 -10.77143 -10.10270 -10.02672 -9.29596 -8.51469 -8.46376 -6.23690 -0.22715 0.26506 1.27686 1.40334 1.56981 1.61623 1.87999 2.03031 2.20516 2.28533 2.43962 2.84807 2.90941 3.10092 3.23552 3.51016 3.73469 3.83627 3.92478 4.03609 4.14642 4.30250 4.41076 4.46549 4.54681 4.59484 4.62016 4.72331 4.78128 4.89186 4.91411 4.99755 5.05060 5.06068 5.11681 5.19152 5.27597 5.28607 5.31995 5.34932 5.39821 5.46792 5.95961 6.07267 6.31040 6.71535 6.73986 7.34814 7.46908 7.67708 8.52944 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.035376 B = 0.002224 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.302420 B =12586.500947 C =13183.879672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C -0.136 4.136 4 C 0.055 3.945 5 O -0.309 6.309 6 C 0.124 3.876 7 C -0.143 4.143 8 C -0.042 4.042 9 C -0.169 4.169 10 C 0.545 3.455 11 O -0.580 6.580 12 N -0.609 5.609 13 C -0.045 4.045 14 C -0.060 4.060 15 N -0.310 5.310 16 N -0.167 5.167 17 C -0.353 4.353 18 H 0.143 0.857 19 C -0.008 4.008 20 N -0.826 5.826 21 Si 1.020 2.980 22 H -0.253 1.253 23 H -0.279 1.279 24 H -0.252 1.252 25 C -0.079 4.079 26 C -0.019 4.019 27 C -0.179 4.179 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.419 0.581 39 H 0.166 0.834 40 H 0.276 0.724 41 H 0.191 0.809 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 -5.667 24.970 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 C -0.193 4.193 4 C -0.019 4.019 5 O -0.222 6.222 6 C 0.078 3.922 7 C -0.162 4.162 8 C -0.061 4.061 9 C -0.173 4.173 10 C 0.334 3.666 11 O -0.461 6.461 12 N -0.253 5.253 13 C -0.151 4.151 14 C -0.235 4.235 15 N -0.142 5.142 16 N 0.064 4.936 17 C -0.485 4.485 18 H 0.160 0.840 19 C -0.220 4.220 20 N -0.453 5.453 21 Si 0.839 3.161 22 H -0.177 1.177 23 H -0.204 1.204 24 H -0.176 1.176 25 C -0.229 4.229 26 C -0.039 4.039 27 C -0.180 4.180 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.152 0.848 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.257 0.743 39 H 0.183 0.817 40 H 0.086 0.914 41 H 0.208 0.792 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.038 -4.323 23.596 24.075 hybrid contribution 0.141 -0.323 -0.117 0.371 sum -1.897 -4.646 23.478 24.009 Atomic orbital electron populations 1.21801 0.91661 1.02292 1.03336 1.20927 0.97369 0.96477 0.90581 1.21779 1.01033 0.93126 1.03362 1.24301 1.03126 0.78410 0.96033 1.86765 1.86042 1.31660 1.17737 1.20103 0.93043 0.94498 0.84555 1.20441 1.03257 1.01071 0.91396 1.21271 0.95078 0.94459 0.95284 1.19560 1.08876 0.97587 0.91237 1.18553 0.77811 0.83643 0.86544 1.90649 1.51567 1.25388 1.78500 1.42279 1.60044 1.18746 1.04270 1.17320 1.16275 0.96865 0.84664 1.24165 1.07652 0.99739 0.91993 1.78152 1.20479 1.00599 1.15011 1.44848 1.34140 1.08508 1.06077 1.20607 1.42409 1.03497 0.81938 0.83994 1.26915 0.95230 0.94971 1.04837 1.70399 1.34422 1.08820 1.31708 0.84638 0.79581 0.78304 0.73590 1.17663 1.20399 1.17637 1.22011 1.14591 1.01014 0.85320 1.20236 0.94074 0.98525 0.91034 1.20814 1.05090 0.97377 0.94737 0.92768 0.92850 0.89233 0.89383 0.92354 0.92733 0.88882 0.84758 0.82021 0.81971 0.74293 0.81711 0.91397 0.79172 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.61 71.98 0.62 -1.22 16 2 C -0.05 -0.81 1.03 -52.03 -0.05 -0.87 16 3 C -0.14 -1.82 8.53 71.98 0.61 -1.20 16 4 C 0.06 0.66 7.09 72.56 0.51 1.18 16 5 O -0.31 -5.63 11.09 -93.56 -1.04 -6.67 16 6 C 0.12 2.55 7.05 22.84 0.16 2.71 16 7 C -0.14 -2.61 10.04 22.41 0.23 -2.39 16 8 C -0.04 -0.86 9.52 22.46 0.21 -0.65 16 9 C -0.17 -4.79 5.88 -20.06 -0.12 -4.91 16 10 C 0.54 20.43 7.74 86.71 0.67 21.10 16 11 O -0.58 -27.04 13.50 -4.08 -0.06 -27.10 16 12 N -0.61 -21.85 5.41 -306.73 -1.66 -23.52 16 13 C -0.05 -2.12 6.90 37.75 0.26 -1.86 16 14 C -0.06 -3.40 10.85 85.42 0.93 -2.47 16 15 N -0.31 -19.13 10.40 -56.46 -0.59 -19.71 16 16 N -0.17 -9.38 3.74 -190.00 -0.71 -10.09 16 17 C -0.35 -18.82 10.25 84.01 0.86 -17.96 16 18 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 19 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 20 N -0.83 -48.31 11.81 21.66 0.26 -48.05 16 21 Si 1.02 38.78 29.55 68.60 2.03 40.80 16 22 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 23 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16 24 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 25 C -0.08 -3.69 11.49 83.38 0.96 -2.73 16 26 C -0.02 -0.53 9.46 22.42 0.21 -0.32 16 27 C -0.18 -3.90 5.04 -19.54 -0.10 -4.00 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.89 7.91 -2.39 -0.02 0.87 16 35 H 0.13 0.87 7.93 -2.39 -0.02 0.85 16 36 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.16 2.31 6.40 -2.91 -0.02 2.29 16 38 H 0.42 10.76 6.86 -92.71 -0.64 10.12 16 39 H 0.17 9.44 5.91 -2.91 -0.02 9.42 16 40 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.19 6.86 8.06 -2.91 -0.02 6.83 16 42 H 0.12 3.60 7.66 -2.91 -0.02 3.58 16 Total: -1.00 -79.96 355.56 5.10 -74.86 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.43 Total: 35.01 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 6.44 Total: -15.54 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -2.70 Total: -101.37 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.09 Total: -33.77 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.80 kcal Total: -79.96 5.10 -74.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811887060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.474 kcal (2) G-P(sol) polarization free energy of solvation -79.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds