Wall clock time and date at job start Tue Mar 31 2020 15:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31817 * 119.12122 * 2 1 4 4 C 1.32314 * 120.81783 * 180.02562 * 3 2 1 5 5 C 1.38626 * 119.10222 * 359.97438 * 4 3 2 6 6 C 1.38571 * 118.39741 * 0.27850 * 5 4 3 7 7 C 1.50704 * 120.44493 * 179.72739 * 6 5 4 8 8 C 1.52998 * 109.47446 * 124.99507 * 7 6 5 9 9 C 1.50700 * 109.47317 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99882 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99976 * 179.97438 * 9 8 7 12 12 C 1.39928 * 119.99786 * 175.49525 * 11 9 8 13 13 C 1.38966 * 120.03192 * 214.84865 * 12 11 9 14 14 C 1.38156 * 120.06079 * 179.72281 * 13 12 11 15 15 C 1.38172 * 120.14343 * 0.55291 * 14 13 12 16 16 C 1.38911 * 120.06757 * 359.72395 * 15 14 13 17 17 O 1.35744 * 120.03313 * 179.97438 * 16 15 14 18 18 C 1.34827 * 117.00258 * 5.36897 * 17 16 15 19 19 H 1.08008 * 119.99879 * 354.96264 * 18 17 16 20 20 C 1.38654 * 120.00668 * 174.96057 * 18 17 16 21 21 N 1.31560 * 119.99488 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00419 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46905 * 90.00231 * 22 20 18 24 24 H 1.48497 * 109.47111 * 210.00159 * 22 20 18 25 25 H 1.48496 * 109.46908 * 330.00339 * 22 20 18 26 26 C 1.38706 * 120.03652 * 35.12661 * 12 11 9 27 27 N 1.31781 * 119.12383 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46862 * 90.00365 * 1 2 3 29 29 H 1.09000 * 109.46904 * 210.00537 * 1 2 3 30 30 H 1.09001 * 109.47223 * 330.00421 * 1 2 3 31 31 H 1.07993 * 120.44973 * 180.02562 * 4 3 2 32 32 H 1.08004 * 120.79967 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47151 * 244.99713 * 7 6 5 34 34 H 1.09004 * 109.47006 * 4.99288 * 7 6 5 35 35 H 1.09004 * 109.47113 * 300.00229 * 8 7 6 36 36 H 1.09004 * 109.47197 * 59.99898 * 8 7 6 37 37 H 0.96999 * 120.00113 * 355.49532 * 11 9 8 38 38 H 1.07997 * 119.96777 * 359.97438 * 13 12 11 39 39 H 1.08001 * 119.93232 * 180.26133 * 14 13 12 40 40 H 1.07994 * 119.96544 * 179.74534 * 15 14 13 41 41 H 0.96999 * 120.00157 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.06952 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1809 0.0000 -0.0005 6 6 3.4712 -1.1903 -0.0059 7 6 4.1962 -2.5115 -0.0123 8 6 3.7166 -3.3621 1.1655 9 6 4.4410 -4.6836 1.1587 10 8 5.2606 -4.9213 0.2969 11 7 4.1789 -5.6007 2.1109 12 6 4.7807 -6.8625 2.0514 13 6 4.0842 -7.9861 2.4799 14 6 4.6757 -9.2330 2.4161 15 6 5.9649 -9.3658 1.9370 16 6 6.6684 -8.2457 1.5125 17 8 7.9350 -8.3768 1.0424 18 6 8.4118 -9.6310 0.9091 19 1 7.8235 -10.4711 1.2478 20 6 9.6571 -9.8423 0.3372 21 7 10.3733 -8.8190 -0.0758 22 14 10.3178 -11.5798 0.1533 23 1 9.8969 -12.1330 -1.1590 24 1 11.8007 -11.5559 0.2278 25 1 9.7809 -12.4316 1.2448 26 6 6.0750 -6.9925 1.5700 27 7 2.1484 -1.1512 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 3.9905 2.1375 -0.0001 32 1 5.2609 -0.0001 -0.0005 33 1 3.9898 -3.0346 -0.9461 34 1 5.2685 -2.3380 0.0776 35 1 3.9229 -2.8390 2.0993 36 1 2.6442 -3.5356 1.0756 37 1 3.5731 -5.3860 2.8374 38 1 3.0782 -7.8850 2.8594 39 1 4.1310 -10.1054 2.7458 40 1 6.4259 -10.3413 1.8922 41 1 11.2447 -8.9667 -0.4756 42 1 6.6198 -6.1202 1.2401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814525755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:20 Heat of formation + Delta-G solvation = 8.306936 kcal Electronic energy + Delta-G solvation = -25636.987786 eV Core-core repulsion = 21775.973277 eV Total energy + Delta-G solvation = -3861.014510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41944 -40.16828 -38.62912 -36.62042 -35.33538 -34.07357 -33.72917 -32.23413 -31.86197 -29.51340 -28.90703 -28.45748 -26.08912 -25.23054 -23.58223 -22.56008 -21.82863 -21.23055 -20.07005 -18.23102 -17.91055 -17.48431 -16.94674 -16.25025 -15.81428 -15.63234 -15.45673 -15.36252 -15.04839 -14.36954 -14.31518 -14.09129 -13.62945 -13.56302 -13.37528 -13.19121 -12.93320 -12.74001 -12.56385 -12.47607 -12.30779 -11.74235 -11.61755 -11.43521 -11.21307 -11.15056 -11.00134 -10.80979 -10.75384 -10.44880 -9.81171 -9.72592 -9.64745 -9.52991 -9.16064 -8.80130 -7.69574 -7.17452 -6.40777 -3.99917 0.57749 0.73846 2.01329 2.35215 2.85099 3.14368 3.15428 3.19571 3.21070 3.41429 3.57298 3.76445 3.99660 4.15357 4.51024 4.60572 4.72783 4.79845 4.86577 4.94355 5.05542 5.13204 5.13866 5.19329 5.30967 5.42494 5.49851 5.55660 5.63611 5.74245 5.82486 5.84947 6.10588 6.11742 6.23753 6.39552 6.70533 6.71497 6.88832 7.04726 7.09298 7.35990 7.48957 7.69489 7.79130 7.80823 8.04115 8.35244 9.04181 9.75528 10.77162 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.002120 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.806551 B =13204.883864 C =14310.798317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.317 3.683 3 N -0.528 5.528 4 C 0.152 3.848 5 C -0.231 4.231 6 C 0.186 3.814 7 C -0.059 4.059 8 C -0.128 4.128 9 C 0.506 3.494 10 O -0.510 6.510 11 N -0.670 5.670 12 C 0.174 3.826 13 C -0.236 4.236 14 C -0.059 4.059 15 C -0.246 4.246 16 C 0.166 3.834 17 O -0.174 6.174 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.267 1.267 26 C -0.187 4.187 27 N -0.517 5.517 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.150 0.850 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.406 0.594 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.270 0.730 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.843 15.932 3.594 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 N -0.243 5.243 4 C -0.013 4.013 5 C -0.253 4.253 6 C 0.040 3.960 7 C -0.097 4.097 8 C -0.168 4.168 9 C 0.293 3.707 10 O -0.384 6.384 11 N -0.315 5.315 12 C 0.081 3.919 13 C -0.257 4.257 14 C -0.078 4.078 15 C -0.265 4.265 16 C 0.111 3.889 17 O -0.077 6.077 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.208 4.208 27 N -0.232 5.232 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.186 0.814 32 H 0.168 0.832 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.241 0.759 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.845 16.021 2.763 23.411 hybrid contribution 0.985 -0.761 0.279 1.275 sum -15.861 15.260 3.043 22.219 Atomic orbital electron populations 1.20571 0.85701 1.04168 1.03932 1.23289 0.98211 0.83363 0.90103 1.68263 1.10250 1.30538 1.15225 1.23244 0.89647 0.98698 0.89720 1.22837 1.03253 0.94082 1.05115 1.21766 0.89529 0.95932 0.88796 1.20399 0.99608 0.89598 1.00097 1.21521 1.02253 0.92973 1.00089 1.20699 0.83055 0.85707 0.81287 1.90805 1.32591 1.78394 1.36588 1.43395 1.47663 1.12806 1.27632 1.17199 0.91270 0.83461 1.00010 1.20280 0.99974 0.91764 1.13663 1.20507 0.94357 0.95861 0.97073 1.21184 0.96384 0.99439 1.09523 1.19150 0.85559 0.92771 0.91409 1.83986 1.21683 1.30674 1.71328 1.21343 1.02153 0.81755 1.41516 0.89003 1.25306 0.95542 0.99742 0.96010 1.70054 1.11844 1.30250 1.37411 0.85704 0.78278 0.80331 0.79049 1.19883 1.20297 1.19199 1.20162 0.93892 0.96952 1.09824 1.68092 1.09591 1.30523 1.15001 0.89613 0.89526 0.89675 0.81409 0.83208 0.88126 0.88523 0.88942 0.87624 0.75931 0.87395 0.87064 0.85469 0.92043 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.32 36.01 0.37 -0.19 16 2 C 0.32 3.15 7.64 -157.19 -1.20 1.94 16 3 N -0.53 -5.27 10.33 -10.72 -0.11 -5.38 16 4 C 0.15 1.23 11.31 -17.20 -0.19 1.03 16 5 C -0.23 -1.89 9.80 -39.32 -0.39 -2.28 16 6 C 0.19 1.84 6.21 -82.25 -0.51 1.33 16 7 C -0.06 -0.60 4.94 -27.88 -0.14 -0.74 16 8 C -0.13 -1.26 5.57 -27.88 -0.16 -1.41 16 9 C 0.51 7.32 7.67 -10.99 -0.08 7.24 16 10 O -0.51 -9.88 13.42 5.56 0.07 -9.81 16 11 N -0.67 -9.40 5.34 -9.88 -0.05 -9.45 16 12 C 0.17 3.22 6.30 -83.72 -0.53 2.70 16 13 C -0.24 -4.03 9.96 -39.34 -0.39 -4.43 16 14 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 15 C -0.25 -5.44 9.17 -39.36 -0.36 -5.80 16 16 C 0.17 4.19 6.64 -39.13 -0.26 3.93 16 17 O -0.17 -5.15 9.75 0.08 0.00 -5.14 16 18 C -0.39 -11.18 9.49 30.89 0.29 -10.88 16 19 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 22 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.19 -4.30 8.64 -39.21 -0.34 -4.63 16 27 N -0.52 -5.50 9.93 -6.99 -0.07 -5.57 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.15 0.89 8.01 -52.48 -0.42 0.47 16 33 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.10 0.96 7.90 -51.93 -0.41 0.55 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.94 7.98 -51.93 -0.41 0.53 16 37 H 0.41 3.97 8.82 -40.82 -0.36 3.61 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.13 3.26 6.23 -52.49 -0.33 2.94 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -36.14 365.41 -8.31 -44.45 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.01 Total: 7.35 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -4.38 Total: -12.69 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.53 Total: -45.47 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.95 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.14 -8.31 -44.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814525755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.754 kcal (2) G-P(sol) polarization free energy of solvation -36.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds