Wall clock time and date at job start Tue Mar 31 2020 15:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31817 * 119.12122 * 2 1 4 4 C 1.32314 * 120.81783 * 180.02562 * 3 2 1 5 5 C 1.38626 * 119.10222 * 359.97438 * 4 3 2 6 6 C 1.38571 * 118.39741 * 0.27850 * 5 4 3 7 7 C 1.50704 * 120.44493 * 179.72739 * 6 5 4 8 8 C 1.52998 * 109.47446 * 124.99507 * 7 6 5 9 9 C 1.50700 * 109.47317 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99882 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99976 * 179.97438 * 9 8 7 12 12 C 1.39928 * 119.99786 * 175.49525 * 11 9 8 13 13 C 1.38966 * 120.03192 * 214.84865 * 12 11 9 14 14 C 1.38156 * 120.06079 * 179.72281 * 13 12 11 15 15 C 1.38172 * 120.14343 * 0.55291 * 14 13 12 16 16 C 1.38911 * 120.06757 * 359.72395 * 15 14 13 17 17 O 1.35744 * 120.03313 * 179.97438 * 16 15 14 18 18 C 1.34827 * 117.00258 * 5.36897 * 17 16 15 19 19 H 1.08008 * 119.99879 * 354.96264 * 18 17 16 20 20 C 1.38654 * 120.00668 * 174.96057 * 18 17 16 21 21 N 1.31560 * 119.99488 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00419 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46905 * 90.00231 * 22 20 18 24 24 H 1.48497 * 109.47111 * 210.00159 * 22 20 18 25 25 H 1.48496 * 109.46908 * 330.00339 * 22 20 18 26 26 C 1.38706 * 120.03652 * 35.12661 * 12 11 9 27 27 N 1.31781 * 119.12383 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46862 * 90.00365 * 1 2 3 29 29 H 1.09000 * 109.46904 * 210.00537 * 1 2 3 30 30 H 1.09001 * 109.47223 * 330.00421 * 1 2 3 31 31 H 1.07993 * 120.44973 * 180.02562 * 4 3 2 32 32 H 1.08004 * 120.79967 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47151 * 244.99713 * 7 6 5 34 34 H 1.09004 * 109.47006 * 4.99288 * 7 6 5 35 35 H 1.09004 * 109.47113 * 300.00229 * 8 7 6 36 36 H 1.09004 * 109.47197 * 59.99898 * 8 7 6 37 37 H 0.96999 * 120.00113 * 355.49532 * 11 9 8 38 38 H 1.07997 * 119.96777 * 359.97438 * 13 12 11 39 39 H 1.08001 * 119.93232 * 180.26133 * 14 13 12 40 40 H 1.07994 * 119.96544 * 179.74534 * 15 14 13 41 41 H 0.96999 * 120.00157 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.06952 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1809 0.0000 -0.0005 6 6 3.4712 -1.1903 -0.0059 7 6 4.1962 -2.5115 -0.0123 8 6 3.7166 -3.3621 1.1655 9 6 4.4410 -4.6836 1.1587 10 8 5.2606 -4.9213 0.2969 11 7 4.1789 -5.6007 2.1109 12 6 4.7807 -6.8625 2.0514 13 6 4.0842 -7.9861 2.4799 14 6 4.6757 -9.2330 2.4161 15 6 5.9649 -9.3658 1.9370 16 6 6.6684 -8.2457 1.5125 17 8 7.9350 -8.3768 1.0424 18 6 8.4118 -9.6310 0.9091 19 1 7.8235 -10.4711 1.2478 20 6 9.6571 -9.8423 0.3372 21 7 10.3733 -8.8190 -0.0758 22 14 10.3178 -11.5798 0.1533 23 1 9.8969 -12.1330 -1.1590 24 1 11.8007 -11.5559 0.2278 25 1 9.7809 -12.4316 1.2448 26 6 6.0750 -6.9925 1.5700 27 7 2.1484 -1.1512 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 3.9905 2.1375 -0.0001 32 1 5.2609 -0.0001 -0.0005 33 1 3.9898 -3.0346 -0.9461 34 1 5.2685 -2.3380 0.0776 35 1 3.9229 -2.8390 2.0993 36 1 2.6442 -3.5356 1.0756 37 1 3.5731 -5.3860 2.8374 38 1 3.0782 -7.8850 2.8594 39 1 4.1310 -10.1054 2.7458 40 1 6.4259 -10.3413 1.8922 41 1 11.2447 -8.9667 -0.4756 42 1 6.6198 -6.1202 1.2401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814525755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:19 Heat of formation + Delta-G solvation = -16.864964 kcal Electronic energy + Delta-G solvation = -25638.079322 eV Core-core repulsion = 21775.973277 eV Total energy + Delta-G solvation = -3862.106045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11694 -41.53276 -40.33451 -38.27469 -36.16616 -35.52736 -34.36600 -34.25848 -32.73666 -31.13354 -30.10589 -29.39720 -27.42148 -26.86973 -24.41083 -23.74413 -23.12328 -22.57984 -21.33861 -19.96228 -19.14891 -18.60676 -18.21971 -17.25974 -16.97263 -16.84516 -16.72145 -16.28891 -16.10702 -15.97655 -15.87423 -15.53466 -15.18526 -14.74694 -14.44933 -14.23757 -14.13017 -13.71432 -13.61112 -13.55373 -13.23987 -13.15452 -13.08042 -12.93919 -12.68091 -12.37510 -12.31836 -12.11791 -11.82727 -11.55787 -11.42082 -11.26029 -10.76336 -10.75026 -10.35313 -10.23728 -9.33930 -8.87197 -8.46515 -6.15964 -0.09437 0.06234 0.43071 0.70767 1.34353 1.44301 1.53070 1.61375 2.00985 2.19946 2.71975 2.83142 2.90616 3.14673 3.17718 3.38451 3.55303 3.69955 4.01983 4.09186 4.12921 4.15503 4.21022 4.37145 4.42697 4.48023 4.55564 4.62326 4.72214 4.73280 4.75288 4.81994 4.94733 5.05360 5.08894 5.09388 5.13109 5.42281 5.47322 5.49533 5.64237 5.74765 6.03437 6.04258 6.21301 6.47670 6.97196 7.10822 7.19657 7.79959 8.77263 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.002120 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.806551 B =13204.883864 C =14310.798317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.302 3.698 3 N -0.545 5.545 4 C 0.151 3.849 5 C -0.231 4.231 6 C 0.173 3.827 7 C -0.056 4.056 8 C -0.110 4.110 9 C 0.504 3.496 10 O -0.564 6.564 11 N -0.655 5.655 12 C 0.182 3.818 13 C -0.205 4.205 14 C -0.050 4.050 15 C -0.256 4.256 16 C 0.124 3.876 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.106 0.894 20 C -0.028 4.028 21 N -0.924 5.924 22 Si 1.023 2.977 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.248 1.248 26 C -0.213 4.213 27 N -0.533 5.533 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.200 0.800 32 H 0.170 0.830 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.431 0.569 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.122 0.878 41 H 0.272 0.728 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.298 15.722 5.418 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.035 3.965 3 N -0.260 5.260 4 C -0.015 4.015 5 C -0.252 4.252 6 C 0.027 3.973 7 C -0.094 4.094 8 C -0.150 4.150 9 C 0.293 3.707 10 O -0.442 6.442 11 N -0.303 5.303 12 C 0.087 3.913 13 C -0.225 4.225 14 C -0.069 4.069 15 C -0.276 4.276 16 C 0.073 3.927 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.123 0.877 20 C -0.225 4.225 21 N -0.562 5.562 22 Si 0.842 3.158 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.172 1.172 26 C -0.235 4.235 27 N -0.249 5.249 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.217 0.783 32 H 0.187 0.813 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.271 0.729 38 H 0.181 0.819 39 H 0.176 0.824 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.399 15.841 4.649 26.243 hybrid contribution 1.731 -0.491 -0.188 1.809 sum -18.668 15.350 4.461 24.577 Atomic orbital electron populations 1.20659 0.83885 1.04979 1.04613 1.23851 0.99506 0.83213 0.89926 1.68338 1.11214 1.30667 1.15786 1.23813 0.89270 0.99949 0.88425 1.23077 1.04310 0.93573 1.04286 1.21730 0.89703 0.96070 0.89782 1.20296 0.99635 0.90019 0.99462 1.21483 1.02259 0.90016 1.01225 1.21588 0.82116 0.86837 0.80136 1.90811 1.35071 1.79514 1.38775 1.43346 1.47327 1.11161 1.28418 1.17357 0.89666 0.86152 0.98078 1.20911 1.01529 0.90209 1.09881 1.21041 0.92604 0.98251 0.94973 1.21331 0.98109 0.98117 1.10068 1.19710 0.85241 0.94825 0.92898 1.83951 1.24321 1.31430 1.74426 1.21902 1.02906 0.82195 1.41934 0.87679 1.26712 0.95514 1.04973 0.95305 1.70222 1.12691 1.33303 1.40006 0.84527 0.77551 0.74006 0.79705 1.18912 1.19618 1.17177 1.20206 0.96054 0.95386 1.11826 1.68084 1.09891 1.31091 1.15787 0.88901 0.88800 0.88740 0.78302 0.81269 0.90050 0.88840 0.86093 0.85812 0.72867 0.81880 0.82365 0.85980 0.91901 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.32 71.24 0.74 -0.23 16 2 C 0.30 5.55 7.64 138.75 1.06 6.61 16 3 N -0.54 -10.01 10.33 -187.84 -1.94 -11.95 16 4 C 0.15 2.14 11.31 84.71 0.96 3.10 16 5 C -0.23 -3.44 9.80 22.44 0.22 -3.22 16 6 C 0.17 3.23 6.21 42.56 0.26 3.49 16 7 C -0.06 -1.12 4.94 29.85 0.15 -0.97 16 8 C -0.11 -1.95 5.57 29.85 0.17 -1.78 16 9 C 0.50 14.19 7.67 87.66 0.67 14.86 16 10 O -0.56 -22.83 13.42 -3.04 -0.04 -22.87 16 11 N -0.66 -16.73 5.34 -303.56 -1.62 -18.35 16 12 C 0.18 6.45 6.30 38.13 0.24 6.69 16 13 C -0.20 -6.05 9.96 22.42 0.22 -5.82 16 14 C -0.05 -1.65 10.03 22.23 0.22 -1.43 16 15 C -0.26 -11.35 9.17 22.42 0.21 -11.15 16 16 C 0.12 6.62 6.64 22.56 0.15 6.77 16 17 O -0.23 -15.05 9.75 -22.64 -0.22 -15.27 16 18 C -0.41 -25.02 9.49 67.92 0.64 -24.37 16 19 H 0.11 5.75 5.20 -2.91 -0.02 5.73 16 20 C -0.03 -1.66 5.49 84.83 0.47 -1.20 16 21 N -0.92 -59.19 13.67 21.61 0.30 -58.90 16 22 Si 1.02 44.07 29.55 68.60 2.03 46.10 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 26 C -0.21 -10.23 8.64 22.51 0.19 -10.03 16 27 N -0.53 -10.63 9.93 -176.03 -1.75 -12.37 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.17 1.73 8.01 -2.91 -0.02 1.71 16 33 H 0.08 1.94 8.10 -2.38 -0.02 1.92 16 34 H 0.09 1.90 7.90 -2.38 -0.02 1.88 16 35 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.12 1.83 7.98 -2.38 -0.02 1.81 16 37 H 0.43 6.52 8.82 -92.71 -0.82 5.71 16 38 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 40 H 0.12 5.42 5.63 -2.91 -0.02 5.41 16 41 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 42 H 0.10 5.52 6.23 -2.91 -0.02 5.50 16 Total: -1.00 -88.35 365.41 3.58 -84.77 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.25 Total: 27.52 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 6.57 Total: -18.68 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -5.01 Total: -101.58 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.26 Total: -38.14 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -88.35 3.58 -84.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814525755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.909 kcal (2) G-P(sol) polarization free energy of solvation -88.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds