Wall clock time and date at job start Tue Mar 31 2020 14:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38623 * 120.44285 * 2 1 4 4 C 1.38576 * 118.39625 * 180.02562 * 3 2 1 5 5 N 1.32349 * 119.10559 * 359.97438 * 4 3 2 6 6 C 1.31783 * 120.81974 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.12392 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46983 * 164.99823 * 7 6 5 9 9 C 1.52994 * 109.47423 * 285.00172 * 7 6 5 10 10 N 1.46503 * 109.46597 * 45.00448 * 7 6 5 11 11 C 1.34778 * 119.99798 * 154.99984 * 10 7 6 12 12 O 1.21595 * 119.99988 * 359.97438 * 11 10 7 13 13 C 1.47530 * 120.00217 * 179.97438 * 11 10 7 14 14 C 1.39672 * 120.19577 * 0.02562 * 13 11 10 15 15 C 1.37821 * 119.91993 * 179.97438 * 14 13 11 16 16 C 1.38579 * 120.32524 * 0.02562 * 15 14 13 17 17 C 1.38023 * 120.39779 * 359.97230 * 16 15 14 18 18 C 1.38835 * 120.07502 * 359.74977 * 17 16 15 19 19 O 1.35523 * 120.16258 * 180.27270 * 18 17 16 20 20 C 1.34814 * 117.00111 * 354.39770 * 19 18 17 21 21 H 1.08006 * 119.99684 * 5.06490 * 20 19 18 22 22 C 1.38699 * 120.00183 * 185.06241 * 20 19 18 23 23 N 1.31519 * 119.99609 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00011 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46843 * 60.00228 * 24 22 20 26 26 H 1.48500 * 109.46912 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47202 * 300.00055 * 24 22 20 28 28 N 1.31811 * 121.75449 * 359.97438 * 6 5 4 29 29 H 1.08994 * 109.47278 * 89.99990 * 1 2 3 30 30 H 1.09004 * 109.46802 * 210.00355 * 1 2 3 31 31 H 1.08997 * 109.46749 * 330.00068 * 1 2 3 32 32 H 1.07997 * 120.80796 * 359.97438 * 3 2 1 33 33 H 1.07995 * 120.45194 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47259 * 300.00329 * 9 7 6 35 35 H 1.09003 * 109.46867 * 60.00098 * 9 7 6 36 36 H 1.08998 * 109.47264 * 179.97438 * 9 7 6 37 37 H 0.96999 * 120.00102 * 334.99785 * 10 7 6 38 38 H 1.08005 * 120.03702 * 359.97438 * 14 13 11 39 39 H 1.08006 * 119.83980 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.80021 * 179.97438 * 16 15 14 41 41 H 1.08003 * 119.96192 * 180.02562 * 17 16 15 42 42 H 0.97002 * 119.99975 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1964 -0.0330 -0.0005 6 6 3.4957 -1.1491 -0.0005 7 6 4.2206 -2.4703 -0.0011 8 1 3.5252 -3.2664 0.2650 9 6 4.7928 -2.7375 -1.3946 10 7 5.3121 -2.4287 0.9753 11 6 5.7696 -3.5717 1.5237 12 8 5.2762 -4.6374 1.2083 13 6 6.8691 -3.5300 2.5065 14 6 7.4385 -2.3082 2.8721 15 6 8.4650 -2.2757 3.7912 16 6 8.9366 -3.4504 4.3552 17 6 8.3835 -4.6652 4.0035 18 6 7.3449 -4.7166 3.0837 19 8 6.7969 -5.9078 2.7413 20 6 7.3805 -7.0160 3.2400 21 1 8.1933 -6.9272 3.9457 22 6 6.9372 -8.2701 2.8470 23 7 5.9478 -8.3781 1.9873 24 14 7.7455 -9.8056 3.5386 25 1 7.5980 -9.8197 5.0162 26 1 7.0936 -11.0097 2.9640 27 1 9.1878 -9.8078 3.1851 28 7 2.1776 -1.1407 0.0000 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6900 2.1420 -0.0004 33 1 4.1745 2.0565 -0.0001 34 1 3.9807 -2.7684 -2.1210 35 1 5.4882 -1.9414 -1.6606 36 1 5.3175 -3.6929 -1.3949 37 1 5.7055 -1.5786 1.2271 38 1 7.0748 -1.3899 2.4350 39 1 8.9047 -1.3302 4.0726 40 1 9.7416 -3.4152 5.0742 41 1 8.7562 -5.5763 4.4478 42 1 5.6380 -9.2551 1.7121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823711299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:11 Heat of formation + Delta-G solvation = -8.050641 kcal Electronic energy + Delta-G solvation = -26878.394604 eV Core-core repulsion = 23016.670777 eV Total energy + Delta-G solvation = -3861.723827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.26736 -41.26328 -39.88941 -38.04342 -36.82101 -35.25816 -34.32520 -33.75814 -32.38613 -30.76399 -30.55143 -29.41055 -27.37954 -26.25941 -24.76263 -24.24240 -23.26633 -22.22043 -21.35554 -19.84634 -19.52694 -18.65507 -18.03664 -17.40609 -16.80721 -16.42010 -16.34384 -16.13390 -16.03260 -15.84561 -15.61919 -15.36775 -15.16062 -14.68036 -14.45494 -14.28242 -14.19059 -14.00837 -13.60236 -13.53892 -13.27048 -13.14827 -12.98571 -12.71165 -12.56224 -12.48922 -12.35422 -12.14540 -11.81530 -11.61873 -11.43383 -10.81554 -10.70204 -10.42375 -10.29513 -10.19313 -9.81750 -9.04263 -8.43147 -6.14499 -0.20080 0.10723 0.11428 0.72481 1.32755 1.46025 1.50894 2.03772 2.06629 2.16992 2.63543 2.74417 2.88596 3.18803 3.22593 3.46270 3.60786 3.80700 3.97248 4.06872 4.10139 4.12565 4.20847 4.28989 4.37154 4.51822 4.55171 4.62385 4.64620 4.71369 4.76909 4.87418 4.98101 5.03732 5.07631 5.11218 5.13202 5.42857 5.46619 5.48397 5.60568 5.68885 5.96690 6.04665 6.16303 6.62984 6.95508 7.04694 7.42423 7.80953 8.77024 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.003142 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.888102 B = 8910.187343 C =10193.171886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.212 4.212 4 C 0.145 3.855 5 N -0.529 5.529 6 C 0.308 3.692 7 C 0.216 3.784 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.708 5.708 11 C 0.552 3.448 12 O -0.562 6.562 13 C -0.245 4.245 14 C -0.031 4.031 15 C -0.200 4.200 16 C -0.038 4.038 17 C -0.256 4.256 18 C 0.152 3.848 19 O -0.188 6.188 20 C -0.429 4.429 21 H 0.108 0.892 22 C -0.022 4.022 23 N -0.904 5.904 24 Si 1.022 2.978 25 H -0.254 1.254 26 H -0.274 1.274 27 H -0.254 1.254 28 N -0.545 5.545 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.192 0.808 33 H 0.212 0.788 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.412 0.588 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.769 24.556 -1.959 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.010 3.990 3 C -0.233 4.233 4 C -0.019 4.019 5 N -0.244 5.244 6 C 0.039 3.961 7 C 0.109 3.891 8 H 0.093 0.907 9 C -0.202 4.202 10 N -0.364 5.364 11 C 0.342 3.658 12 O -0.440 6.440 13 C -0.250 4.250 14 C -0.049 4.049 15 C -0.218 4.218 16 C -0.056 4.056 17 C -0.276 4.276 18 C 0.096 3.904 19 O -0.090 6.090 20 C -0.505 4.505 21 H 0.125 0.875 22 C -0.221 4.221 23 N -0.540 5.540 24 Si 0.841 3.159 25 H -0.178 1.178 26 H -0.198 1.198 27 H -0.178 1.178 28 N -0.261 5.261 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.210 0.790 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.251 0.749 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.174 0.826 41 H 0.144 0.856 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.017 22.705 -2.449 23.188 hybrid contribution -0.234 -0.286 0.148 0.398 sum -4.251 22.419 -2.301 22.935 Atomic orbital electron populations 1.20916 0.85565 1.04963 1.04747 1.22481 0.99290 0.88074 0.89177 1.23230 0.96421 1.01250 1.02423 1.24032 0.93274 0.96061 0.88512 1.68089 1.42130 0.99224 1.14957 1.22582 0.87018 0.93831 0.92660 1.19231 0.88023 0.91277 0.90607 0.90682 1.21999 1.01760 1.02232 0.94195 1.45606 1.37219 1.09188 1.44411 1.18546 0.82896 0.83464 0.80874 1.90931 1.59402 1.30995 1.62693 1.19219 1.05169 0.93429 1.07163 1.21255 0.94215 0.94430 0.95017 1.21160 1.00176 0.99287 1.01170 1.21445 0.97010 0.90819 0.96304 1.21314 1.01587 1.00615 1.04052 1.20036 0.91431 0.86720 0.92170 1.84182 1.49650 1.11544 1.63616 1.22017 1.18746 0.82914 1.26816 0.87505 1.26773 0.96866 1.02140 0.96353 1.70325 1.26579 1.25643 1.31430 0.84622 0.78334 0.74201 0.78790 1.17761 1.19834 1.17778 1.68005 1.09541 1.33061 1.15492 0.88329 0.91322 0.86948 0.79037 0.77141 0.90601 0.90315 0.93396 0.74929 0.83066 0.81803 0.82588 0.85642 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.22 71.24 0.73 -0.51 16 2 C 0.15 2.94 6.82 42.58 0.29 3.23 16 3 C -0.21 -2.60 9.86 22.44 0.22 -2.38 16 4 C 0.15 2.11 11.30 84.70 0.96 3.06 16 5 N -0.53 -12.40 9.60 -187.85 -1.80 -14.20 16 6 C 0.31 9.05 6.58 138.75 0.91 9.96 16 7 C 0.22 7.70 2.97 44.24 0.13 7.84 16 8 H 0.08 3.23 7.55 -2.38 -0.02 3.21 16 9 C -0.14 -4.66 9.47 71.98 0.68 -3.98 16 10 N -0.71 -26.25 5.01 -449.26 -2.25 -28.50 16 11 C 0.55 26.84 7.73 86.69 0.67 27.51 16 12 O -0.56 -34.45 14.83 16.88 0.25 -34.20 16 13 C -0.25 -11.25 5.89 -19.99 -0.12 -11.37 16 14 C -0.03 -1.01 9.53 22.52 0.21 -0.79 16 15 C -0.20 -5.63 10.02 22.25 0.22 -5.41 16 16 C -0.04 -1.20 10.03 22.30 0.22 -0.98 16 17 C -0.26 -11.20 9.16 22.36 0.20 -11.00 16 18 C 0.15 8.06 6.66 22.91 0.15 8.21 16 19 O -0.19 -12.20 7.84 0.81 0.01 -12.19 16 20 C -0.43 -26.40 9.49 67.93 0.64 -25.75 16 21 H 0.11 5.86 5.21 -2.91 -0.02 5.85 16 22 C -0.02 -1.33 5.49 84.85 0.47 -0.86 16 23 N -0.90 -60.09 13.67 21.62 0.30 -59.80 16 24 Si 1.02 44.89 29.55 68.60 2.03 46.92 16 25 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 28 N -0.54 -15.48 10.26 -176.00 -1.81 -17.29 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.11 0.59 8.10 -2.39 -0.02 0.57 16 32 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.41 12.55 6.05 -92.71 -0.56 11.99 16 38 H 0.15 3.73 6.40 -2.91 -0.02 3.71 16 39 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.13 5.50 5.64 -2.91 -0.02 5.49 16 42 H 0.27 16.51 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -93.49 363.51 3.84 -89.65 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.51 Total: 32.81 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.61 Total: -3.20 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -5.56 Total: -119.78 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: 0.26 Total: -46.39 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -93.49 3.84 -89.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823711299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.597 kcal (2) G-P(sol) polarization free energy of solvation -93.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds