Wall clock time and date at job start Tue Mar 31 2020 14:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38618 * 120.45191 * 2 1 4 4 C 1.38576 * 118.40119 * 179.97438 * 3 2 1 5 5 N 1.32351 * 119.10650 * 359.72444 * 4 3 2 6 6 C 1.31789 * 120.81138 * 0.54932 * 5 4 3 7 7 C 1.50705 * 119.11528 * 179.71533 * 6 5 4 8 8 H 1.09006 * 109.46936 * 194.72895 * 7 6 5 9 9 C 1.52999 * 109.47147 * 74.73247 * 7 6 5 10 10 N 1.46500 * 109.47169 * 314.73278 * 7 6 5 11 11 C 1.34778 * 119.99498 * 204.99871 * 10 7 6 12 12 O 1.21594 * 120.00599 * 0.02562 * 11 10 7 13 13 C 1.47538 * 119.99948 * 179.97438 * 11 10 7 14 14 C 1.39670 * 120.19456 * 0.02562 * 13 11 10 15 15 C 1.37827 * 119.92020 * 180.02562 * 14 13 11 16 16 C 1.38577 * 120.31935 * 359.97438 * 15 14 13 17 17 C 1.38025 * 120.40542 * 0.02778 * 16 15 14 18 18 C 1.38835 * 120.06924 * 359.67562 * 17 16 15 19 19 O 1.35515 * 120.15874 * 180.30039 * 18 17 16 20 20 C 1.34809 * 117.00202 * 354.39604 * 19 18 17 21 21 H 1.07997 * 120.00026 * 5.06648 * 20 19 18 22 22 C 1.38701 * 120.00204 * 185.06327 * 20 19 18 23 23 N 1.31527 * 119.99610 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00104 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47098 * 90.00247 * 24 22 20 26 26 H 1.48500 * 109.46763 * 210.00348 * 24 22 20 27 27 H 1.48501 * 109.46928 * 330.00169 * 24 22 20 28 28 N 1.31808 * 121.75881 * 359.44001 * 6 5 4 29 29 H 1.09002 * 109.46807 * 270.02945 * 1 2 3 30 30 H 1.08996 * 109.46852 * 30.02072 * 1 2 3 31 31 H 1.08990 * 109.47421 * 150.02320 * 1 2 3 32 32 H 1.07994 * 120.79881 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.44782 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47497 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.47201 * 59.99700 * 9 7 6 36 36 H 1.09001 * 109.47268 * 299.99975 * 9 7 6 37 37 H 0.96996 * 120.00359 * 25.00093 * 10 7 6 38 38 H 1.08002 * 120.03778 * 0.02562 * 14 13 11 39 39 H 1.07995 * 119.83772 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.79485 * 180.02562 * 16 15 14 41 41 H 1.07995 * 119.96055 * 179.97438 * 17 16 15 42 42 H 0.97001 * 119.99530 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 0.0005 5 7 4.1964 -0.0333 0.0066 6 6 3.4955 -1.1493 0.0012 7 6 4.2205 -2.4705 0.0019 8 1 3.5250 -3.2667 -0.2641 9 6 4.7925 -2.7377 1.3956 10 7 5.3120 -2.4291 -0.9743 11 6 5.7695 -3.5723 -1.5224 12 8 5.2760 -4.6379 -1.2071 13 6 6.8685 -3.5306 -2.5059 14 6 7.4380 -2.3088 -2.8715 15 6 8.4640 -2.2765 -3.7912 16 6 8.9348 -3.4512 -4.3558 17 6 8.3816 -4.6659 -4.0042 18 6 7.3516 -4.7182 -3.0748 19 8 6.8113 -5.9104 -2.7237 20 6 7.2375 -6.9976 -3.3972 21 1 8.0353 -6.9070 -4.1194 22 6 6.6515 -8.2327 -3.1626 23 7 5.6795 -8.3429 -2.2833 24 14 7.2426 -9.7393 -4.0953 25 1 8.3385 -10.3932 -3.3360 26 1 6.1163 -10.6932 -4.2593 27 1 7.7426 -9.3292 -5.4321 28 7 2.1774 -1.1408 0.0006 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5134 32 1 1.6901 2.1418 -0.0004 33 1 4.1747 2.0563 0.0010 34 1 5.3164 -3.6934 1.3963 35 1 3.9803 -2.7684 2.1219 36 1 5.4878 -1.9416 1.6617 37 1 5.7055 -1.5791 -1.2261 38 1 7.0749 -1.3906 -2.4340 39 1 8.9032 -1.3310 -4.0733 40 1 9.7394 -3.4160 -5.0753 41 1 8.7538 -5.5770 -4.4489 42 1 5.2694 -9.2066 -2.1195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823711300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:19 Heat of formation + Delta-G solvation = 17.440206 kcal Electronic energy + Delta-G solvation = -26880.379585 eV Core-core repulsion = 23019.761123 eV Total energy + Delta-G solvation = -3860.618461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35604 -39.54737 -38.14720 -36.30812 -35.42101 -34.36121 -32.57531 -32.29054 -30.98389 -29.31903 -28.86130 -28.72218 -25.39987 -25.08033 -23.53665 -23.15146 -21.67921 -20.84983 -19.73816 -18.07690 -17.96237 -17.57205 -16.55033 -16.03248 -15.74019 -15.30333 -15.08005 -14.60461 -14.40450 -14.17988 -14.14162 -13.72424 -13.60737 -13.54683 -13.38229 -13.14290 -12.74458 -12.63799 -12.45252 -12.30027 -11.95578 -11.68193 -11.35839 -11.23260 -11.08896 -10.89500 -10.86736 -10.74004 -10.72298 -10.43081 -9.68954 -9.52813 -9.42089 -8.84333 -8.81116 -8.57263 -8.23058 -7.26918 -6.40604 -4.00485 0.65084 0.87704 1.75933 2.36370 3.14314 3.15524 3.20147 3.33804 3.56017 3.71811 3.84769 3.96716 4.09086 4.24378 4.67617 4.69999 4.82744 5.00062 5.11069 5.14774 5.20331 5.21905 5.38127 5.45695 5.52965 5.56943 5.58616 5.63269 5.76319 5.84695 6.04685 6.15106 6.16760 6.22712 6.41593 6.61136 6.73251 6.82798 6.95103 6.97416 7.10787 7.27865 7.33216 7.73634 7.93227 7.96129 8.18967 8.98888 9.13129 9.71658 10.73152 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.003166 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.408884 B = 8841.988019 C =10123.534992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.236 4.236 4 C 0.152 3.848 5 N -0.516 5.516 6 C 0.327 3.673 7 C 0.217 3.783 8 H 0.114 0.886 9 C -0.154 4.154 10 N -0.733 5.733 11 C 0.557 3.443 12 O -0.499 6.499 13 C -0.226 4.226 14 C -0.037 4.037 15 C -0.231 4.231 16 C -0.051 4.051 17 C -0.238 4.238 18 C 0.190 3.810 19 O -0.123 6.123 20 C -0.404 4.404 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.832 5.832 24 Si 0.940 3.060 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.267 1.267 28 N -0.509 5.509 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.399 0.601 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.084 19.185 3.652 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.258 4.258 4 C -0.014 4.014 5 N -0.231 5.231 6 C 0.059 3.941 7 C 0.110 3.890 8 H 0.131 0.869 9 C -0.213 4.213 10 N -0.390 5.390 11 C 0.347 3.653 12 O -0.372 6.372 13 C -0.230 4.230 14 C -0.056 4.056 15 C -0.250 4.250 16 C -0.069 4.069 17 C -0.258 4.258 18 C 0.131 3.869 19 O -0.022 6.022 20 C -0.480 4.480 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.764 3.236 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 N -0.224 5.224 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.164 0.836 33 H 0.187 0.813 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.235 0.765 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.346 17.200 4.174 18.489 hybrid contribution 0.144 0.791 -0.641 1.029 sum -5.202 17.992 3.533 19.059 Atomic orbital electron populations 1.20803 0.87745 1.04230 1.03717 1.21803 0.97725 0.88154 0.89310 1.22741 0.96692 1.00417 1.05946 1.23252 0.92171 0.96159 0.89784 1.68163 1.41784 0.98708 1.14397 1.23336 0.86683 0.94454 0.89597 1.19367 0.88898 0.90084 0.90679 0.86867 1.22132 1.01317 1.03496 0.94387 1.45873 1.37665 1.10122 1.45307 1.18237 0.82945 0.83262 0.80872 1.90951 1.57342 1.28450 1.60498 1.18803 1.04252 0.92090 1.07893 1.20789 0.94526 0.95048 0.95219 1.20456 1.02733 0.97516 1.04291 1.20895 0.97042 0.92284 0.96707 1.21151 1.01568 0.98702 1.04345 1.19257 0.90481 0.86585 0.90604 1.84171 1.55544 1.10970 1.51472 1.21489 1.19752 0.84658 1.22059 0.88908 1.25379 0.95614 0.98417 0.96901 1.70135 1.21038 1.25340 1.29799 0.85736 0.78450 0.79983 0.79381 1.19771 1.20154 1.19099 1.68102 1.09510 1.30529 1.14265 0.89614 0.90118 0.89657 0.83592 0.81334 0.90223 0.92064 0.91963 0.76549 0.87025 0.87303 0.87211 0.85073 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.22 36.01 0.37 -0.38 16 2 C 0.18 1.86 6.82 -82.24 -0.56 1.29 16 3 C -0.24 -1.95 9.86 -39.32 -0.39 -2.34 16 4 C 0.15 1.41 11.30 -17.20 -0.19 1.22 16 5 N -0.52 -6.58 9.61 -10.72 -0.10 -6.69 16 6 C 0.33 4.79 6.58 -157.19 -1.03 3.76 16 7 C 0.22 3.62 2.97 -69.08 -0.21 3.41 16 8 H 0.11 2.16 7.55 -51.93 -0.39 1.76 16 9 C -0.15 -2.34 9.47 37.16 0.35 -1.98 16 10 N -0.73 -13.09 5.01 -55.97 -0.28 -13.37 16 11 C 0.56 12.67 7.73 -12.47 -0.10 12.57 16 12 O -0.50 -13.77 14.83 -16.57 -0.25 -14.02 16 13 C -0.23 -5.06 5.89 -104.81 -0.62 -5.67 16 14 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 15 C -0.23 -3.92 10.03 -39.61 -0.40 -4.31 16 16 C -0.05 -0.92 10.03 -39.53 -0.40 -1.31 16 17 C -0.24 -5.21 9.16 -39.44 -0.36 -5.57 16 18 C 0.19 4.81 6.66 -38.60 -0.26 4.56 16 19 O -0.12 -3.68 7.84 -21.02 -0.16 -3.85 16 20 C -0.40 -11.54 9.49 30.90 0.29 -11.25 16 21 H 0.09 2.41 5.21 -52.49 -0.27 2.13 16 22 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 23 N -0.83 -25.27 13.67 55.48 0.76 -24.51 16 24 Si 0.94 20.73 29.55 -169.99 -5.02 15.70 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 28 N -0.51 -7.17 10.26 -6.98 -0.07 -7.24 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 6.25 6.06 -40.82 -0.25 6.01 16 38 H 0.11 1.64 6.40 -52.49 -0.34 1.31 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -36.04 363.52 -8.52 -44.57 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.91 Total: 9.82 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.97 Total: -5.89 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.30 Total: -51.81 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.41 Total: -17.86 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.04 -8.52 -44.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823711300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.005 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds