Wall clock time and date at job start Tue Mar 31 2020 14:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38618 * 120.45191 * 2 1 4 4 C 1.38576 * 118.40119 * 179.97438 * 3 2 1 5 5 N 1.32351 * 119.10650 * 359.72444 * 4 3 2 6 6 C 1.31789 * 120.81138 * 0.54932 * 5 4 3 7 7 C 1.50705 * 119.11528 * 179.71533 * 6 5 4 8 8 H 1.09006 * 109.46936 * 194.72895 * 7 6 5 9 9 C 1.52999 * 109.47147 * 74.73247 * 7 6 5 10 10 N 1.46500 * 109.47169 * 314.73278 * 7 6 5 11 11 C 1.34778 * 119.99498 * 204.99871 * 10 7 6 12 12 O 1.21594 * 120.00599 * 0.02562 * 11 10 7 13 13 C 1.47538 * 119.99948 * 179.97438 * 11 10 7 14 14 C 1.39670 * 120.19456 * 0.02562 * 13 11 10 15 15 C 1.37827 * 119.92020 * 180.02562 * 14 13 11 16 16 C 1.38577 * 120.31935 * 359.97438 * 15 14 13 17 17 C 1.38025 * 120.40542 * 0.02778 * 16 15 14 18 18 C 1.38835 * 120.06924 * 359.67562 * 17 16 15 19 19 O 1.35515 * 120.15874 * 180.30039 * 18 17 16 20 20 C 1.34809 * 117.00202 * 354.39604 * 19 18 17 21 21 H 1.07997 * 120.00026 * 5.06648 * 20 19 18 22 22 C 1.38701 * 120.00204 * 185.06327 * 20 19 18 23 23 N 1.31527 * 119.99610 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00104 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47098 * 90.00247 * 24 22 20 26 26 H 1.48500 * 109.46763 * 210.00348 * 24 22 20 27 27 H 1.48501 * 109.46928 * 330.00169 * 24 22 20 28 28 N 1.31808 * 121.75881 * 359.44001 * 6 5 4 29 29 H 1.09002 * 109.46807 * 270.02945 * 1 2 3 30 30 H 1.08996 * 109.46852 * 30.02072 * 1 2 3 31 31 H 1.08990 * 109.47421 * 150.02320 * 1 2 3 32 32 H 1.07994 * 120.79881 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.44782 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47497 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.47201 * 59.99700 * 9 7 6 36 36 H 1.09001 * 109.47268 * 299.99975 * 9 7 6 37 37 H 0.96996 * 120.00359 * 25.00093 * 10 7 6 38 38 H 1.08002 * 120.03778 * 0.02562 * 14 13 11 39 39 H 1.07995 * 119.83772 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.79485 * 180.02562 * 16 15 14 41 41 H 1.07995 * 119.96055 * 179.97438 * 17 16 15 42 42 H 0.97001 * 119.99530 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 0.0005 5 7 4.1964 -0.0333 0.0066 6 6 3.4955 -1.1493 0.0012 7 6 4.2205 -2.4705 0.0019 8 1 3.5250 -3.2667 -0.2641 9 6 4.7925 -2.7377 1.3956 10 7 5.3120 -2.4291 -0.9743 11 6 5.7695 -3.5723 -1.5224 12 8 5.2760 -4.6379 -1.2071 13 6 6.8685 -3.5306 -2.5059 14 6 7.4380 -2.3088 -2.8715 15 6 8.4640 -2.2765 -3.7912 16 6 8.9348 -3.4512 -4.3558 17 6 8.3816 -4.6659 -4.0042 18 6 7.3516 -4.7182 -3.0748 19 8 6.8113 -5.9104 -2.7237 20 6 7.2375 -6.9976 -3.3972 21 1 8.0353 -6.9070 -4.1194 22 6 6.6515 -8.2327 -3.1626 23 7 5.6795 -8.3429 -2.2833 24 14 7.2426 -9.7393 -4.0953 25 1 8.3385 -10.3932 -3.3360 26 1 6.1163 -10.6932 -4.2593 27 1 7.7426 -9.3292 -5.4321 28 7 2.1774 -1.1408 0.0006 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5134 32 1 1.6901 2.1418 -0.0004 33 1 4.1747 2.0563 0.0010 34 1 5.3164 -3.6934 1.3963 35 1 3.9803 -2.7684 2.1219 36 1 5.4878 -1.9416 1.6617 37 1 5.7055 -1.5791 -1.2261 38 1 7.0749 -1.3906 -2.4340 39 1 8.9032 -1.3310 -4.0733 40 1 9.7394 -3.4160 -5.0753 41 1 8.7538 -5.5770 -4.4489 42 1 5.2694 -9.2066 -2.1195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823711300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:18 Heat of formation + Delta-G solvation = -8.153535 kcal Electronic energy + Delta-G solvation = -26881.489412 eV Core-core repulsion = 23019.761123 eV Total energy + Delta-G solvation = -3861.728289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.26707 -41.26428 -39.89065 -38.04448 -36.82128 -35.25821 -34.32501 -33.75897 -32.38614 -30.76378 -30.55211 -29.41103 -27.38257 -26.25866 -24.76298 -24.24287 -23.26738 -22.22122 -21.35640 -19.84801 -19.52817 -18.65588 -18.03893 -17.40581 -16.80791 -16.42155 -16.32697 -16.15138 -16.03333 -15.85940 -15.60681 -15.32712 -15.19717 -14.67997 -14.46909 -14.26195 -14.19631 -14.01541 -13.60145 -13.54231 -13.26971 -13.14878 -12.99790 -12.70955 -12.57147 -12.50779 -12.33449 -12.12002 -11.81607 -11.61913 -11.43040 -10.82572 -10.70262 -10.42426 -10.29567 -10.19241 -9.81785 -9.04284 -8.43471 -6.14669 -0.20103 0.10692 0.11381 0.72341 1.32745 1.44568 1.52134 2.03471 2.06942 2.16661 2.63645 2.74355 2.88389 3.18940 3.22451 3.46133 3.60735 3.80681 3.97221 4.06923 4.10147 4.12571 4.20886 4.28995 4.37129 4.51834 4.55216 4.62345 4.64658 4.71244 4.76982 4.87424 4.98069 5.03711 5.07747 5.11197 5.13226 5.42841 5.46594 5.48394 5.60524 5.68883 5.96716 6.04598 6.16255 6.62969 6.95389 7.04659 7.42410 7.80939 8.76945 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.003166 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.408884 B = 8841.988019 C =10123.534992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.212 4.212 4 C 0.145 3.855 5 N -0.528 5.528 6 C 0.308 3.692 7 C 0.216 3.784 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.708 5.708 11 C 0.552 3.448 12 O -0.562 6.562 13 C -0.245 4.245 14 C -0.031 4.031 15 C -0.200 4.200 16 C -0.038 4.038 17 C -0.256 4.256 18 C 0.152 3.848 19 O -0.188 6.188 20 C -0.428 4.428 21 H 0.108 0.892 22 C -0.023 4.023 23 N -0.904 5.904 24 Si 1.023 2.977 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.247 1.247 28 N -0.545 5.545 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.192 0.808 33 H 0.212 0.788 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.126 0.874 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 24.560 2.154 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.010 3.990 3 C -0.233 4.233 4 C -0.019 4.019 5 N -0.244 5.244 6 C 0.039 3.961 7 C 0.108 3.892 8 H 0.093 0.907 9 C -0.202 4.202 10 N -0.364 5.364 11 C 0.342 3.658 12 O -0.440 6.440 13 C -0.250 4.250 14 C -0.049 4.049 15 C -0.218 4.218 16 C -0.056 4.056 17 C -0.276 4.276 18 C 0.097 3.903 19 O -0.090 6.090 20 C -0.504 4.504 21 H 0.125 0.875 22 C -0.222 4.222 23 N -0.540 5.540 24 Si 0.841 3.159 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.171 1.171 28 N -0.261 5.261 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.210 0.790 33 H 0.229 0.771 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.251 0.749 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.174 0.826 41 H 0.143 0.857 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.786 22.711 2.663 23.178 hybrid contribution -0.290 -0.288 -0.195 0.453 sum -4.077 22.423 2.468 22.923 Atomic orbital electron populations 1.20913 0.85577 1.04959 1.04746 1.22479 0.99287 0.88078 0.89181 1.23227 0.96427 1.01245 1.02430 1.24036 0.93270 0.96070 0.88504 1.68097 1.42109 0.99216 1.14953 1.22588 0.87016 0.93846 0.92654 1.19233 0.88022 0.91262 0.90637 0.90725 1.21999 1.01769 1.02256 0.94144 1.45603 1.37204 1.09189 1.44422 1.18547 0.82893 0.83469 0.80869 1.90931 1.59420 1.31016 1.62648 1.19220 1.04575 0.93230 1.07942 1.21256 0.94216 0.94439 0.95003 1.21160 1.00258 0.99286 1.01075 1.21445 0.96971 0.90838 0.96328 1.21312 1.01402 1.00614 1.04233 1.20032 0.91679 0.86491 0.92136 1.84178 1.58357 1.12428 1.54048 1.22051 1.20397 0.85293 1.22649 0.87496 1.26779 0.95562 1.01977 0.97856 1.70336 1.24153 1.26140 1.33374 0.84555 0.78021 0.74916 0.78406 1.18602 1.19792 1.17073 1.68006 1.09561 1.33064 1.15494 0.88327 0.86945 0.91337 0.79039 0.77126 0.93337 0.90627 0.90287 0.74931 0.83060 0.81800 0.82599 0.85664 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.22 71.24 0.73 -0.52 16 2 C 0.15 2.96 6.82 42.58 0.29 3.25 16 3 C -0.21 -2.61 9.86 22.44 0.22 -2.39 16 4 C 0.15 2.11 11.30 84.70 0.96 3.07 16 5 N -0.53 -12.39 9.61 -187.84 -1.81 -14.19 16 6 C 0.31 9.06 6.58 138.75 0.91 9.97 16 7 C 0.22 7.70 2.97 44.25 0.13 7.83 16 8 H 0.07 3.22 7.55 -2.38 -0.02 3.20 16 9 C -0.14 -4.63 9.47 71.98 0.68 -3.94 16 10 N -0.71 -26.23 5.01 -449.25 -2.25 -28.48 16 11 C 0.55 26.83 7.73 86.70 0.67 27.50 16 12 O -0.56 -34.43 14.83 16.88 0.25 -34.18 16 13 C -0.24 -11.24 5.89 -19.99 -0.12 -11.36 16 14 C -0.03 -1.01 9.54 22.52 0.21 -0.79 16 15 C -0.20 -5.62 10.03 22.25 0.22 -5.40 16 16 C -0.04 -1.21 10.03 22.30 0.22 -0.98 16 17 C -0.26 -11.20 9.16 22.36 0.20 -11.00 16 18 C 0.15 8.07 6.66 22.91 0.15 8.22 16 19 O -0.19 -12.21 7.84 0.95 0.01 -12.20 16 20 C -0.43 -26.33 9.49 67.93 0.64 -25.68 16 21 H 0.11 5.88 5.21 -2.91 -0.02 5.86 16 22 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 23 N -0.90 -60.13 13.67 21.62 0.30 -59.83 16 24 Si 1.02 44.94 29.55 68.60 2.03 46.97 16 25 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 28 N -0.55 -15.55 10.26 -176.01 -1.81 -17.35 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 0.60 8.10 -2.39 -0.02 0.58 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 33 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.41 12.53 6.06 -92.71 -0.56 11.97 16 38 H 0.15 3.72 6.40 -2.91 -0.02 3.70 16 39 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.13 5.50 5.64 -2.91 -0.02 5.48 16 42 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -93.54 363.52 3.84 -89.70 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.51 Total: 32.69 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 6.60 Total: -3.12 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -5.56 Total: -119.86 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: 0.26 Total: -46.38 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -93.54 3.84 -89.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823711300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.551 kcal (2) G-P(sol) polarization free energy of solvation -93.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds