Wall clock time and date at job start Tue Mar 31 2020 14:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35508 * 116.99992 * 2 1 4 4 C 1.39449 * 120.47477 * 179.97438 * 3 2 1 5 5 C 1.38204 * 118.48651 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.37015 * 180.02562 * 5 4 3 7 7 N 1.32464 * 119.25681 * 359.74534 * 5 4 3 8 8 C 1.32373 * 120.89675 * 0.51715 * 7 5 4 9 9 N 1.38922 * 119.17390 * 179.75430 * 8 7 5 10 10 C 1.34783 * 120.00343 * 179.72448 * 9 8 7 11 11 O 1.21263 * 119.99334 * 0.02562 * 10 9 8 12 12 C 1.50693 * 119.99880 * 180.02562 * 10 9 8 13 13 C 1.50706 * 109.46906 * 179.97438 * 12 10 9 14 14 C 1.37632 * 120.12924 * 265.00072 * 13 12 10 15 15 C 1.38614 * 120.25049 * 179.97438 * 14 13 12 16 16 C 1.38650 * 120.50064 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24925 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12470 * 84.72349 * 13 12 10 19 19 C 1.41397 * 120.24713 * 359.97438 * 18 13 12 20 20 H 1.07998 * 119.99588 * 329.70087 * 19 18 13 21 21 C 1.39948 * 120.00082 * 149.70100 * 19 18 13 22 22 N 1.30818 * 119.99680 * 162.01372 * 21 19 18 23 23 Si 1.86798 * 119.99768 * 342.01702 * 21 19 18 24 24 H 1.48494 * 109.47190 * 95.40206 * 23 21 19 25 25 H 1.48504 * 109.46678 * 215.40175 * 23 21 19 26 26 H 1.48496 * 109.47290 * 335.39809 * 23 21 19 27 27 N 1.32400 * 121.65218 * 359.47316 * 8 7 5 28 28 H 1.09003 * 109.46723 * 300.00032 * 1 2 3 29 29 H 1.08993 * 109.47231 * 60.00055 * 1 2 3 30 30 H 1.08997 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.75045 * 0.04690 * 4 3 2 32 32 H 1.08998 * 109.47170 * 90.00214 * 6 5 4 33 33 H 1.09001 * 109.46799 * 209.99833 * 6 5 4 34 34 H 1.08992 * 109.47151 * 329.99739 * 6 5 4 35 35 H 0.97004 * 120.00151 * 359.72325 * 9 8 7 36 36 H 1.09001 * 109.47727 * 60.00053 * 12 10 9 37 37 H 1.09000 * 109.47533 * 299.99358 * 12 10 9 38 38 H 1.08001 * 119.87731 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.75054 * 179.97438 * 15 14 13 40 40 H 1.08004 * 119.88166 * 179.97438 * 16 15 14 41 41 H 1.08007 * 120.12858 * 179.97438 * 17 16 15 42 42 H 0.97004 * 119.99666 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4362 1.2919 0.0005 5 6 4.0205 2.5443 0.0011 6 6 5.5209 2.6851 0.0011 7 7 3.2469 3.6196 -0.0041 8 6 1.9279 3.5081 0.0005 9 7 1.1509 4.6597 0.0001 10 6 -0.1936 4.5656 -0.0009 11 8 -0.7250 3.4756 -0.0009 12 6 -1.0363 5.8149 -0.0020 13 6 -2.4952 5.4367 -0.0035 14 6 -3.1886 5.3636 -1.1901 15 6 -4.5303 5.0154 -1.1945 16 6 -5.1892 4.7377 -0.0066 17 6 -4.5161 4.8056 1.1916 18 6 -3.1520 5.1513 1.2076 19 6 -2.4482 5.2170 2.4322 20 1 -1.3908 4.9986 2.4596 21 6 -3.1217 5.5649 3.6086 22 7 -2.5889 5.2932 4.7720 23 14 -4.7814 6.4171 3.5173 24 1 -5.8636 5.4062 3.6269 25 1 -4.8994 7.3914 4.6318 26 1 -4.9006 7.1313 2.2209 27 7 1.3306 2.3265 0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.0436 0.3990 0.0002 32 1 5.8826 2.7195 -1.0266 33 1 5.7995 3.6049 0.5153 34 1 5.9657 1.8328 0.5145 35 1 1.5760 5.5316 0.0004 36 1 -0.8130 6.4032 -0.8920 37 1 -0.8143 6.4038 0.8880 38 1 -2.6856 5.5782 -2.1214 39 1 -5.0668 4.9609 -2.1303 40 1 -6.2349 4.4679 -0.0216 41 1 -5.0314 4.5893 2.1159 42 1 -3.0555 5.5347 5.5874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839318366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:20 Heat of formation + Delta-G solvation = 9.817330 kcal Electronic energy + Delta-G solvation = -27424.190991 eV Core-core repulsion = 23563.241977 eV Total energy + Delta-G solvation = -3860.949014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28196 -39.43362 -38.36987 -37.59797 -34.85326 -33.60727 -33.51430 -31.98969 -31.14168 -30.33891 -28.86084 -27.30381 -26.68377 -25.00271 -23.64150 -22.78278 -21.42173 -20.53955 -19.57683 -18.62488 -17.52313 -17.36545 -16.55820 -16.22441 -16.10228 -15.65709 -15.30446 -15.17607 -14.52580 -14.36402 -14.34928 -13.80070 -13.70632 -13.47404 -13.20568 -12.92282 -12.69810 -12.49703 -12.18416 -11.92159 -11.83391 -11.61390 -11.43432 -11.18636 -10.92493 -10.82240 -10.75677 -10.34918 -10.26646 -9.73117 -9.66918 -9.60140 -9.54179 -9.13841 -8.88153 -8.41470 -7.62488 -7.53378 -6.94832 -4.49919 1.07748 1.27539 2.45195 2.69548 2.83866 3.08118 3.11563 3.13221 3.21789 3.31500 3.97534 3.99846 4.05198 4.47464 4.63507 4.81402 5.15327 5.20602 5.32362 5.36967 5.44996 5.52518 5.56035 5.60542 5.69126 5.79398 5.88669 5.94968 6.05804 6.08809 6.16510 6.23863 6.54231 6.62310 6.70211 6.93387 6.97596 7.18668 7.23343 7.35540 7.45136 7.64242 7.73505 7.88627 8.12189 8.33107 8.36110 8.64180 8.66187 8.80599 10.07234 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003665 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.729087 B = 7638.554929 C = 7990.369114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.303 6.303 3 C 0.390 3.610 4 C -0.290 4.290 5 C 0.225 3.775 6 C -0.101 4.101 7 N -0.577 5.577 8 C 0.586 3.414 9 N -0.646 5.646 10 C 0.507 3.493 11 O -0.446 6.446 12 C -0.067 4.067 13 C -0.173 4.173 14 C -0.065 4.065 15 C -0.243 4.243 16 C -0.078 4.078 17 C -0.233 4.233 18 C 0.112 3.888 19 C -0.444 4.444 20 H 0.088 0.912 21 C 0.085 3.915 22 N -0.808 5.808 23 Si 0.910 3.090 24 H -0.271 1.271 25 H -0.292 1.292 26 H -0.243 1.243 27 N -0.557 5.557 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.421 0.579 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.266 -2.805 -7.946 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.207 6.207 3 C 0.201 3.799 4 C -0.315 4.315 5 C 0.080 3.920 6 C -0.158 4.158 7 N -0.304 5.304 8 C 0.231 3.769 9 N -0.297 5.297 10 C 0.293 3.707 11 O -0.310 6.310 12 C -0.107 4.107 13 C -0.174 4.174 14 C -0.084 4.084 15 C -0.262 4.262 16 C -0.096 4.096 17 C -0.252 4.252 18 C 0.109 3.891 19 C -0.473 4.473 20 H 0.106 0.894 21 C -0.134 4.134 22 N -0.432 5.432 23 Si 0.737 3.263 24 H -0.198 1.198 25 H -0.219 1.219 26 H -0.166 1.166 27 N -0.294 5.294 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.166 0.834 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.258 0.742 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.283 -3.076 -7.652 13.181 hybrid contribution -0.345 -0.013 0.259 0.431 sum 9.938 -3.089 -7.393 12.766 Atomic orbital electron populations 1.22977 0.75733 1.02681 1.04152 1.86183 1.24145 1.23837 1.86524 1.19968 0.88974 0.84906 0.86059 1.21471 0.92643 1.00203 1.17224 1.21141 0.96677 0.86644 0.87513 1.20734 0.87348 1.04089 1.03619 1.67690 1.03880 1.34199 1.24680 1.19121 0.84744 0.85551 0.87518 1.43783 1.07006 1.06503 1.72382 1.21607 0.79981 0.93340 0.75760 1.90768 1.70505 1.28723 1.41053 1.20294 0.92942 0.93669 1.03826 1.18999 0.92776 1.11989 0.93665 1.20430 0.94230 0.98101 0.95598 1.20325 0.95253 1.14281 0.96353 1.20608 0.97570 0.98278 0.93170 1.21003 0.96248 1.11560 0.96405 1.17462 0.91116 0.87982 0.92588 1.19415 0.98117 1.40018 0.89705 0.89417 1.26165 0.99265 0.93383 0.94589 1.69711 1.39502 1.34948 0.99002 0.86333 0.81237 0.79629 0.79108 1.19764 1.21945 1.16622 1.68088 1.39631 0.97341 1.24324 0.91194 0.91599 0.88693 0.83416 0.89654 0.89800 0.90003 0.74166 0.89732 0.87643 0.89051 0.88988 0.88993 0.88319 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.41 101.05 1.05 1.64 16 2 O -0.30 -4.76 10.49 -18.22 -0.19 -4.95 16 3 C 0.39 6.49 7.53 -16.71 -0.13 6.36 16 4 C -0.29 -3.86 9.80 -39.14 -0.38 -4.24 16 5 C 0.23 2.87 6.81 -82.33 -0.56 2.31 16 6 C -0.10 -0.79 10.21 36.01 0.37 -0.43 16 7 N -0.58 -8.81 10.39 -10.13 -0.11 -8.92 16 8 C 0.59 10.37 8.38 -322.33 -2.70 7.67 16 9 N -0.65 -10.65 5.40 -13.08 -0.07 -10.72 16 10 C 0.51 9.91 7.38 -10.99 -0.08 9.83 16 11 O -0.45 -10.47 14.23 5.57 0.08 -10.39 16 12 C -0.07 -1.23 5.19 -29.03 -0.15 -1.39 16 13 C -0.17 -3.85 4.43 -103.91 -0.46 -4.31 16 14 C -0.07 -1.37 9.66 -39.66 -0.38 -1.75 16 15 C -0.24 -5.12 10.05 -39.29 -0.39 -5.51 16 16 C -0.08 -1.73 10.02 -39.66 -0.40 -2.12 16 17 C -0.23 -5.72 7.17 -38.87 -0.28 -5.99 16 18 C 0.11 2.80 5.10 -106.82 -0.54 2.25 16 19 C -0.44 -11.79 8.56 -37.74 -0.32 -12.12 16 20 H 0.09 2.47 6.99 -52.49 -0.37 2.10 16 21 C 0.08 2.21 5.41 -17.34 -0.09 2.12 16 22 N -0.81 -21.54 13.93 55.55 0.77 -20.77 16 23 Si 0.91 20.68 24.52 -169.99 -4.17 16.52 16 24 H -0.27 -6.08 6.71 56.52 0.38 -5.70 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.24 -5.60 6.85 56.52 0.39 -5.21 16 27 N -0.56 -10.65 6.81 -13.89 -0.09 -10.75 16 28 H 0.07 1.22 8.12 -51.93 -0.42 0.79 16 29 H 0.07 1.07 8.12 -51.93 -0.42 0.64 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.42 5.37 8.81 -40.82 -0.36 5.01 16 36 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 37 H 0.11 1.91 7.15 -51.93 -0.37 1.54 16 38 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 41 H 0.10 2.43 4.74 -52.48 -0.25 2.18 16 42 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -32.52 357.59 -9.01 -41.53 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.16 Total: 8.74 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -5.46 Total: -5.68 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.50 Total: -51.15 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.11 Total: -15.34 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.17 Total: 16.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.52 -9.01 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839318366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.344 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds