Wall clock time and date at job start Tue Mar 31 2020 14:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35508 * 116.99992 * 2 1 4 4 C 1.39449 * 120.47477 * 179.97438 * 3 2 1 5 5 C 1.38204 * 118.48651 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.37015 * 180.02562 * 5 4 3 7 7 N 1.32464 * 119.25681 * 359.74534 * 5 4 3 8 8 C 1.32373 * 120.89675 * 0.51715 * 7 5 4 9 9 N 1.38922 * 119.17390 * 179.75430 * 8 7 5 10 10 C 1.34783 * 120.00343 * 179.72448 * 9 8 7 11 11 O 1.21263 * 119.99334 * 0.02562 * 10 9 8 12 12 C 1.50693 * 119.99880 * 180.02562 * 10 9 8 13 13 C 1.50706 * 109.46906 * 179.97438 * 12 10 9 14 14 C 1.37632 * 120.12924 * 265.00072 * 13 12 10 15 15 C 1.38614 * 120.25049 * 179.97438 * 14 13 12 16 16 C 1.38650 * 120.50064 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24925 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12470 * 84.72349 * 13 12 10 19 19 C 1.41397 * 120.24713 * 359.97438 * 18 13 12 20 20 H 1.07998 * 119.99588 * 329.70087 * 19 18 13 21 21 C 1.39948 * 120.00082 * 149.70100 * 19 18 13 22 22 N 1.30818 * 119.99680 * 162.01372 * 21 19 18 23 23 Si 1.86798 * 119.99768 * 342.01702 * 21 19 18 24 24 H 1.48494 * 109.47190 * 95.40206 * 23 21 19 25 25 H 1.48504 * 109.46678 * 215.40175 * 23 21 19 26 26 H 1.48496 * 109.47290 * 335.39809 * 23 21 19 27 27 N 1.32400 * 121.65218 * 359.47316 * 8 7 5 28 28 H 1.09003 * 109.46723 * 300.00032 * 1 2 3 29 29 H 1.08993 * 109.47231 * 60.00055 * 1 2 3 30 30 H 1.08997 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.75045 * 0.04690 * 4 3 2 32 32 H 1.08998 * 109.47170 * 90.00214 * 6 5 4 33 33 H 1.09001 * 109.46799 * 209.99833 * 6 5 4 34 34 H 1.08992 * 109.47151 * 329.99739 * 6 5 4 35 35 H 0.97004 * 120.00151 * 359.72325 * 9 8 7 36 36 H 1.09001 * 109.47727 * 60.00053 * 12 10 9 37 37 H 1.09000 * 109.47533 * 299.99358 * 12 10 9 38 38 H 1.08001 * 119.87731 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.75054 * 179.97438 * 15 14 13 40 40 H 1.08004 * 119.88166 * 179.97438 * 16 15 14 41 41 H 1.08007 * 120.12858 * 179.97438 * 17 16 15 42 42 H 0.97004 * 119.99666 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4362 1.2919 0.0005 5 6 4.0205 2.5443 0.0011 6 6 5.5209 2.6851 0.0011 7 7 3.2469 3.6196 -0.0041 8 6 1.9279 3.5081 0.0005 9 7 1.1509 4.6597 0.0001 10 6 -0.1936 4.5656 -0.0009 11 8 -0.7250 3.4756 -0.0009 12 6 -1.0363 5.8149 -0.0020 13 6 -2.4952 5.4367 -0.0035 14 6 -3.1886 5.3636 -1.1901 15 6 -4.5303 5.0154 -1.1945 16 6 -5.1892 4.7377 -0.0066 17 6 -4.5161 4.8056 1.1916 18 6 -3.1520 5.1513 1.2076 19 6 -2.4482 5.2170 2.4322 20 1 -1.3908 4.9986 2.4596 21 6 -3.1217 5.5649 3.6086 22 7 -2.5889 5.2932 4.7720 23 14 -4.7814 6.4171 3.5173 24 1 -5.8636 5.4062 3.6269 25 1 -4.8994 7.3914 4.6318 26 1 -4.9006 7.1313 2.2209 27 7 1.3306 2.3265 0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.0436 0.3990 0.0002 32 1 5.8826 2.7195 -1.0266 33 1 5.7995 3.6049 0.5153 34 1 5.9657 1.8328 0.5145 35 1 1.5760 5.5316 0.0004 36 1 -0.8130 6.4032 -0.8920 37 1 -0.8143 6.4038 0.8880 38 1 -2.6856 5.5782 -2.1214 39 1 -5.0668 4.9609 -2.1303 40 1 -6.2349 4.4679 -0.0216 41 1 -5.0314 4.5893 2.1159 42 1 -3.0555 5.5347 5.5874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839318366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:19 Heat of formation + Delta-G solvation = -11.048427 kcal Electronic energy + Delta-G solvation = -27425.095798 eV Core-core repulsion = 23563.241977 eV Total energy + Delta-G solvation = -3861.853821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.51050 -40.90839 -39.69389 -39.19969 -36.18479 -35.49978 -34.75276 -33.58193 -32.38629 -32.14767 -29.85412 -28.88634 -27.82641 -26.81518 -24.97801 -23.98354 -23.19940 -22.03959 -21.10403 -19.93484 -19.25331 -18.78863 -17.87333 -17.51565 -17.50299 -17.38434 -16.66026 -16.38326 -16.17877 -15.85221 -15.53152 -15.49048 -15.13507 -14.97100 -14.54326 -14.23641 -13.90693 -13.83430 -13.72964 -13.16861 -13.12125 -12.99285 -12.94325 -12.70087 -12.65523 -12.51631 -12.14048 -11.99083 -11.55127 -11.51986 -11.39637 -11.00199 -10.97406 -10.96058 -10.22462 -9.62397 -9.40594 -9.31635 -8.87564 -6.46666 -0.12722 0.11572 0.75497 0.90011 1.26823 1.37735 1.49078 1.55105 1.68235 1.89753 2.12909 2.63406 2.76687 2.93601 3.34215 3.60805 3.79276 3.97980 4.16885 4.26809 4.27415 4.29078 4.34146 4.37857 4.45886 4.56273 4.66305 4.70959 4.81537 4.84145 4.87369 4.92420 4.95711 5.15665 5.20192 5.36322 5.40716 5.65123 5.76820 5.85787 5.94148 6.04457 6.07262 6.12910 6.28282 6.45341 6.78676 6.89724 7.04977 7.26975 8.20514 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003665 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.729087 B = 7638.554929 C = 7990.369114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.302 6.302 3 C 0.359 3.641 4 C -0.277 4.277 5 C 0.221 3.779 6 C -0.095 4.095 7 N -0.575 5.575 8 C 0.562 3.438 9 N -0.635 5.635 10 C 0.510 3.490 11 O -0.495 6.495 12 C -0.066 4.066 13 C -0.175 4.175 14 C -0.074 4.074 15 C -0.230 4.230 16 C -0.089 4.089 17 C -0.256 4.256 18 C 0.088 3.912 19 C -0.469 4.469 20 H 0.054 0.946 21 C 0.048 3.952 22 N -0.854 5.854 23 Si 0.964 3.036 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.247 1.247 27 N -0.596 5.596 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.134 0.866 31 H 0.184 0.816 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.436 0.564 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.264 -2.569 -10.427 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.206 6.206 3 C 0.172 3.828 4 C -0.301 4.301 5 C 0.076 3.924 6 C -0.152 4.152 7 N -0.303 5.303 8 C 0.206 3.794 9 N -0.288 5.288 10 C 0.297 3.703 11 O -0.363 6.363 12 C -0.105 4.105 13 C -0.176 4.176 14 C -0.092 4.092 15 C -0.248 4.248 16 C -0.107 4.107 17 C -0.276 4.276 18 C 0.085 3.915 19 C -0.499 4.499 20 H 0.072 0.928 21 C -0.166 4.166 22 N -0.481 5.481 23 Si 0.789 3.211 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.171 1.171 27 N -0.333 5.333 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.152 0.848 31 H 0.201 0.799 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.277 0.723 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.333 -2.822 -10.140 15.467 hybrid contribution -0.542 -0.168 0.796 0.978 sum 10.791 -2.991 -9.344 14.584 Atomic orbital electron populations 1.22911 0.75783 1.04322 1.01577 1.86181 1.24036 1.23679 1.86741 1.20487 0.90398 0.84580 0.87348 1.21926 0.91324 1.01903 1.14925 1.22089 0.98810 0.85817 0.85639 1.20919 0.83395 1.05508 1.05387 1.67814 1.02736 1.35295 1.24419 1.19323 0.85744 0.85402 0.88951 1.43480 1.06199 1.07307 1.71790 1.21709 0.80897 0.92893 0.74774 1.90749 1.71662 1.30302 1.43598 1.20348 0.90767 0.93522 1.05864 1.19456 0.94673 1.10197 0.93306 1.20893 0.94550 0.97287 0.96449 1.20866 0.95440 1.11178 0.97360 1.20978 0.99140 0.97913 0.92656 1.21141 0.96386 1.12715 0.97318 1.17685 0.91833 0.88836 0.93131 1.19315 0.96807 1.42559 0.91241 0.92807 1.26801 1.02058 0.93651 0.94088 1.69754 1.41321 1.37328 0.99674 0.85502 0.77805 0.78821 0.79016 1.19504 1.20553 1.17073 1.67963 1.41445 0.98513 1.25405 0.94569 0.93326 0.84814 0.79890 0.87461 0.89470 0.87289 0.72317 0.85116 0.87941 0.85464 0.85429 0.86133 0.89256 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.53 10.41 113.37 1.18 2.71 16 2 O -0.30 -9.58 10.49 -88.10 -0.92 -10.51 16 3 C 0.36 12.06 7.53 84.85 0.64 12.70 16 4 C -0.28 -6.87 9.80 22.55 0.22 -6.65 16 5 C 0.22 5.17 6.81 42.46 0.29 5.46 16 6 C -0.10 -1.15 10.21 71.24 0.73 -0.42 16 7 N -0.58 -17.08 10.39 -185.96 -1.93 -19.01 16 8 C 0.56 20.20 8.38 261.32 2.19 22.39 16 9 N -0.64 -21.32 5.40 -313.70 -1.69 -23.02 16 10 C 0.51 20.43 7.38 87.65 0.65 21.07 16 11 O -0.49 -24.30 14.23 -2.98 -0.04 -24.34 16 12 C -0.07 -2.38 5.19 29.10 0.15 -2.23 16 13 C -0.17 -7.71 4.43 -19.40 -0.09 -7.79 16 14 C -0.07 -2.89 9.66 22.22 0.21 -2.68 16 15 C -0.23 -8.91 10.05 22.46 0.23 -8.68 16 16 C -0.09 -3.76 10.02 22.22 0.22 -3.54 16 17 C -0.26 -12.62 7.17 22.73 0.16 -12.46 16 18 C 0.09 4.50 5.10 -21.29 -0.11 4.39 16 19 C -0.47 -26.33 8.56 23.46 0.20 -26.13 16 20 H 0.05 3.27 6.99 -2.91 -0.02 3.25 16 21 C 0.05 2.61 5.41 85.26 0.46 3.07 16 22 N -0.85 -48.04 13.93 21.83 0.30 -47.73 16 23 Si 0.96 43.78 24.52 68.60 1.68 45.46 16 24 H -0.27 -11.93 6.71 99.48 0.67 -11.26 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.25 -11.23 6.85 99.48 0.68 -10.54 16 27 N -0.60 -23.62 6.81 -310.58 -2.12 -25.74 16 28 H 0.04 1.36 8.12 -2.39 -0.02 1.34 16 29 H 0.05 1.66 8.12 -2.39 -0.02 1.64 16 30 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 0.78 8.09 -2.39 -0.02 0.76 16 35 H 0.44 11.08 8.81 -92.71 -0.82 10.27 16 36 H 0.13 3.44 8.05 -2.39 -0.02 3.42 16 37 H 0.10 3.81 7.15 -2.39 -0.02 3.79 16 38 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 39 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 41 H 0.09 4.47 4.74 -2.91 -0.01 4.45 16 42 H 0.29 14.78 8.30 -92.71 -0.77 14.01 16 Total: -1.00 -76.10 357.59 2.80 -73.30 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.19 Total: 30.37 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 7.34 Total: 1.21 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -5.44 Total: -115.50 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.97 Total: -34.84 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.68 Total: 45.46 kcal Total: -76.10 2.80 -73.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839318366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.248 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds