Wall clock time and date at job start Tue Mar 31 2020 16:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27642 * 125.76698 * 2 1 4 4 O 1.41379 * 113.17249 * 179.65513 * 3 2 1 5 5 C 1.44258 * 107.50334 * 17.37649 * 4 3 2 6 6 H 1.08993 * 111.04663 * 92.97121 * 5 4 3 7 7 C 1.53005 * 111.00870 * 216.82644 * 5 4 3 8 8 N 1.46498 * 109.46836 * 289.88091 * 7 5 4 9 9 C 1.34779 * 119.99585 * 184.49807 * 8 7 5 10 10 O 1.21666 * 120.00271 * 3.40627 * 9 8 7 11 11 C 1.46895 * 119.99959 * 183.40462 * 9 8 7 12 12 C 1.36119 * 125.43832 * 186.67050 * 11 9 8 13 13 C 1.41701 * 107.74812 * 180.27904 * 12 11 9 14 14 C 1.40020 * 133.35483 * 179.78039 * 13 12 11 15 15 C 1.36572 * 119.83389 * 179.97438 * 14 13 12 16 16 C 1.38851 * 120.60330 * 359.95223 * 15 14 13 17 17 C 1.37852 * 120.63089 * 0.03079 * 16 15 14 18 18 C 1.39081 * 119.81289 * 359.97438 * 17 16 15 19 19 N 1.37844 * 133.16554 * 180.02562 * 18 17 16 20 20 C 1.36892 * 125.61395 * 359.97438 * 19 18 17 21 21 H 1.08001 * 119.99688 * 229.24362 * 20 19 18 22 22 C 1.39008 * 120.00197 * 49.24808 * 20 19 18 23 23 N 1.31349 * 119.99665 * 196.22670 * 22 20 19 24 24 Si 1.86798 * 120.00436 * 16.22107 * 22 20 19 25 25 H 1.48506 * 109.47006 * 264.80926 * 24 22 20 26 26 H 1.48504 * 109.46777 * 24.80288 * 24 22 20 27 27 H 1.48494 * 109.47556 * 144.80625 * 24 22 20 28 28 C 1.51681 * 125.77005 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47685 * 270.02083 * 1 2 3 30 30 H 1.09004 * 109.47467 * 30.02448 * 1 2 3 31 31 H 1.09001 * 109.47056 * 150.02100 * 1 2 3 32 32 H 1.09000 * 109.46752 * 169.88081 * 7 5 4 33 33 H 1.09000 * 109.47138 * 49.88378 * 7 5 4 34 34 H 0.97002 * 120.00374 * 4.49447 * 8 7 5 35 35 H 1.07996 * 126.12571 * 0.02562 * 12 11 9 36 36 H 1.08001 * 120.07913 * 359.97438 * 14 13 12 37 37 H 1.08004 * 119.69753 * 179.97438 * 15 14 13 38 38 H 1.07994 * 119.68961 * 180.02562 * 16 15 14 39 39 H 1.07997 * 120.09532 * 180.02562 * 17 16 15 40 40 H 0.97003 * 120.00187 * 180.02562 * 23 22 20 41 41 H 1.09002 * 110.80474 * 46.49202 * 28 2 1 42 42 H 1.09000 * 110.80348 * 282.99150 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7274 0.0078 5 6 3.7719 -0.6500 -0.3975 6 1 3.9329 -0.7273 -1.4727 7 6 4.9003 -1.3376 0.3739 8 7 6.1904 -0.8016 -0.0670 9 6 7.3365 -1.3249 0.4117 10 8 7.3016 -2.2822 1.1617 11 6 8.6279 -0.7393 0.0278 12 6 9.8502 -1.2515 0.3383 13 6 10.8319 -0.3889 -0.2096 14 6 12.2320 -0.4023 -0.2081 15 6 12.9217 0.5935 -0.8390 16 6 12.2471 1.6213 -1.4844 17 6 10.8691 1.6560 -1.4999 18 6 10.1449 0.6530 -0.8642 19 7 8.7956 0.4173 -0.7099 20 6 7.7879 1.2032 -1.2008 21 1 6.9797 1.5114 -0.5540 22 6 7.8048 1.6044 -2.5316 23 7 7.0404 2.5962 -2.9282 24 14 8.9145 0.7332 -3.7558 25 1 10.1904 1.4817 -3.8871 26 1 9.1957 -0.6439 -3.2763 27 1 8.2400 0.6692 -5.0772 28 6 2.3936 -1.2307 0.0006 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 4.8686 -2.4105 0.1845 33 1 4.7757 -1.1532 1.4410 34 1 6.2198 -0.0702 -0.7035 35 1 10.0382 -2.1517 0.9046 36 1 12.7652 -1.1981 0.2907 37 1 14.0016 0.5812 -0.8361 38 1 12.8072 2.4010 -1.9790 39 1 10.3532 2.4592 -2.0049 40 1 7.0518 2.8760 -3.8569 41 1 2.0508 -1.9552 -0.7381 42 1 2.4341 -1.6782 0.9936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854795551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:15 Heat of formation + Delta-G solvation = 47.863721 kcal Electronic energy + Delta-G solvation = -27551.316014 eV Core-core repulsion = 23692.016816 eV Total energy + Delta-G solvation = -3859.299199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.82902 -40.23059 -38.56648 -36.19465 -34.87629 -33.73687 -33.43542 -31.45262 -31.16116 -29.27094 -28.56011 -28.43109 -26.27201 -24.92722 -23.03367 -21.70994 -21.15206 -20.32627 -19.78306 -19.25820 -18.43244 -16.78463 -16.71894 -16.12199 -15.87454 -15.43850 -15.05096 -14.88222 -14.62547 -14.27735 -13.98685 -13.78510 -13.43544 -13.32583 -13.19478 -13.06465 -12.99924 -12.80024 -12.68994 -12.26277 -12.15737 -12.06256 -11.71230 -11.47552 -11.43704 -11.03884 -11.00219 -10.60925 -10.51140 -10.28885 -9.97386 -9.55121 -9.46650 -9.40117 -8.78780 -8.60113 -7.38575 -7.00330 -6.91682 -4.76929 1.57134 1.77012 2.45275 2.81731 2.98227 3.04302 3.08174 3.17316 3.57491 3.84234 4.02580 4.07886 4.12363 4.38677 4.50199 4.58347 4.70384 4.74221 4.98482 5.16638 5.19447 5.26667 5.41158 5.45798 5.49211 5.60601 5.68135 5.77100 5.85082 5.92414 6.02244 6.15805 6.22806 6.39920 6.58170 6.73619 6.80668 6.91399 7.16575 7.21405 7.31164 7.42517 7.54725 7.60729 7.73743 8.06719 8.17587 8.57695 8.83505 9.00440 10.06241 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.003872 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.823525 B = 7230.303427 C = 8360.900036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.070 3.930 3 N -0.287 5.287 4 O -0.180 6.180 5 C 0.030 3.970 6 H 0.095 0.905 7 C 0.128 3.872 8 N -0.723 5.723 9 C 0.597 3.403 10 O -0.558 6.558 11 C -0.008 4.008 12 C -0.158 4.158 13 C -0.127 4.127 14 C -0.076 4.076 15 C -0.160 4.160 16 C -0.128 4.128 17 C -0.103 4.103 18 C 0.069 3.931 19 N -0.278 5.278 20 C -0.379 4.379 21 H 0.125 0.875 22 C 0.089 3.911 23 N -0.818 5.818 24 Si 0.869 3.131 25 H -0.249 1.249 26 H -0.253 1.253 27 H -0.280 1.280 28 C -0.145 4.145 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.425 0.575 35 H 0.139 0.861 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.287 0.713 41 H 0.104 0.896 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 -6.054 1.053 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 N -0.028 5.028 4 O -0.199 6.199 5 C -0.029 4.029 6 H 0.113 0.887 7 C 0.003 3.997 8 N -0.384 5.384 9 C 0.385 3.615 10 O -0.437 6.437 11 C -0.123 4.123 12 C -0.185 4.185 13 C -0.132 4.132 14 C -0.094 4.094 15 C -0.179 4.179 16 C -0.148 4.148 17 C -0.122 4.122 18 C -0.045 4.045 19 N 0.056 4.944 20 C -0.506 4.506 21 H 0.142 0.858 22 C -0.126 4.126 23 N -0.446 5.446 24 Si 0.692 3.308 25 H -0.173 1.173 26 H -0.176 1.176 27 H -0.206 1.206 28 C -0.185 4.185 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.272 0.728 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.665 -5.113 1.328 9.309 hybrid contribution 0.450 -0.770 -1.115 1.428 sum -7.215 -5.883 0.213 9.312 Atomic orbital electron populations 1.20386 0.85504 1.04290 1.03973 1.26244 0.98072 0.92285 0.95768 1.77903 0.89806 1.23443 1.11663 1.91424 1.14615 1.26462 1.87447 1.23947 0.94763 0.83616 1.00581 0.88677 1.21302 0.81992 0.97781 0.98633 1.46641 1.04011 1.39863 1.47863 1.17187 0.82724 0.82201 0.79342 1.90720 1.87553 1.27979 1.37494 1.20235 0.93977 0.90768 1.07280 1.20477 0.89518 1.01481 1.07030 1.18039 0.93184 0.97629 1.04330 1.20177 0.91785 0.98201 0.99286 1.20364 0.98642 0.96476 1.02466 1.20613 0.93030 0.99239 1.01930 1.20168 0.93473 0.97876 1.00727 1.18539 0.84266 0.98251 1.03418 1.40271 1.03350 1.15104 1.35663 1.19268 1.04762 1.30268 0.96261 0.85758 1.25503 0.95695 0.93912 0.97525 1.69703 1.35287 1.20596 1.18981 0.86852 0.81212 0.82643 0.80054 1.17309 1.17641 1.20576 1.23088 0.91705 0.98594 1.05098 0.89433 0.89854 0.89715 0.89823 0.90975 0.72833 0.84351 0.87070 0.87217 0.86922 0.86419 0.90191 0.87789 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.49 36.01 0.38 -0.17 16 2 C 0.07 0.78 7.45 -78.58 -0.59 0.20 16 3 N -0.29 -4.59 12.45 35.65 0.44 -4.14 16 4 O -0.18 -3.32 12.24 -11.36 -0.14 -3.46 16 5 C 0.03 0.43 3.86 -25.80 -0.10 0.33 16 6 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 7 C 0.13 2.03 5.38 -4.04 -0.02 2.00 16 8 N -0.72 -14.50 5.41 -61.55 -0.33 -14.83 16 9 C 0.60 13.30 7.77 -12.76 -0.10 13.20 16 10 O -0.56 -12.88 16.84 5.22 0.09 -12.79 16 11 C -0.01 -0.20 6.77 -82.25 -0.56 -0.75 16 12 C -0.16 -3.49 10.55 -39.02 -0.41 -3.90 16 13 C -0.13 -2.79 6.16 -106.89 -0.66 -3.45 16 14 C -0.08 -1.42 10.06 -39.52 -0.40 -1.82 16 15 C -0.16 -2.81 9.97 -39.96 -0.40 -3.20 16 16 C -0.13 -2.40 10.02 -39.50 -0.40 -2.79 16 17 C -0.10 -2.26 7.20 -39.41 -0.28 -2.54 16 18 C 0.07 1.63 5.13 -83.83 -0.43 1.20 16 19 N -0.28 -6.81 2.29 -56.08 -0.13 -6.94 16 20 C -0.38 -9.56 7.79 -15.01 -0.12 -9.68 16 21 H 0.13 3.32 7.03 -52.49 -0.37 2.95 16 22 C 0.09 2.23 5.02 -17.47 -0.09 2.14 16 23 N -0.82 -20.91 13.95 55.50 0.77 -20.13 16 24 Si 0.87 19.88 24.64 -169.99 -4.19 15.69 16 25 H -0.25 -5.50 6.10 56.52 0.34 -5.16 16 26 H -0.25 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C -0.14 -1.45 6.63 -26.47 -0.18 -1.62 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 1.18 8.12 -51.93 -0.42 0.75 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.42 9.16 4.64 -40.82 -0.19 8.97 16 35 H 0.14 2.77 8.06 -52.49 -0.42 2.35 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.12 2.64 6.56 -52.49 -0.34 2.29 16 40 H 0.29 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.90 7.91 -51.93 -0.41 0.49 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -31.05 352.02 -7.67 -38.72 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -5.15 Total: 13.45 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -4.34 Total: -10.86 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.76 Total: -46.05 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.05 Total: -16.25 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.19 Total: 15.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.05 -7.67 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854795551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.585 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds