Wall clock time and date at job start Tue Mar 31 2020 16:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27642 * 125.76698 * 2 1 4 4 O 1.41379 * 113.17249 * 179.65513 * 3 2 1 5 5 C 1.44258 * 107.50334 * 17.37649 * 4 3 2 6 6 H 1.08993 * 111.04663 * 92.97121 * 5 4 3 7 7 C 1.53005 * 111.00870 * 216.82644 * 5 4 3 8 8 N 1.46498 * 109.46836 * 289.88091 * 7 5 4 9 9 C 1.34779 * 119.99585 * 184.49807 * 8 7 5 10 10 O 1.21666 * 120.00271 * 3.40627 * 9 8 7 11 11 C 1.46895 * 119.99959 * 183.40462 * 9 8 7 12 12 C 1.36119 * 125.43832 * 186.67050 * 11 9 8 13 13 C 1.41701 * 107.74812 * 180.27904 * 12 11 9 14 14 C 1.40020 * 133.35483 * 179.78039 * 13 12 11 15 15 C 1.36572 * 119.83389 * 179.97438 * 14 13 12 16 16 C 1.38851 * 120.60330 * 359.95223 * 15 14 13 17 17 C 1.37852 * 120.63089 * 0.03079 * 16 15 14 18 18 C 1.39081 * 119.81289 * 359.97438 * 17 16 15 19 19 N 1.37844 * 133.16554 * 180.02562 * 18 17 16 20 20 C 1.36892 * 125.61395 * 359.97438 * 19 18 17 21 21 H 1.08001 * 119.99688 * 229.24362 * 20 19 18 22 22 C 1.39008 * 120.00197 * 49.24808 * 20 19 18 23 23 N 1.31349 * 119.99665 * 196.22670 * 22 20 19 24 24 Si 1.86798 * 120.00436 * 16.22107 * 22 20 19 25 25 H 1.48506 * 109.47006 * 264.80926 * 24 22 20 26 26 H 1.48504 * 109.46777 * 24.80288 * 24 22 20 27 27 H 1.48494 * 109.47556 * 144.80625 * 24 22 20 28 28 C 1.51681 * 125.77005 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47685 * 270.02083 * 1 2 3 30 30 H 1.09004 * 109.47467 * 30.02448 * 1 2 3 31 31 H 1.09001 * 109.47056 * 150.02100 * 1 2 3 32 32 H 1.09000 * 109.46752 * 169.88081 * 7 5 4 33 33 H 1.09000 * 109.47138 * 49.88378 * 7 5 4 34 34 H 0.97002 * 120.00374 * 4.49447 * 8 7 5 35 35 H 1.07996 * 126.12571 * 0.02562 * 12 11 9 36 36 H 1.08001 * 120.07913 * 359.97438 * 14 13 12 37 37 H 1.08004 * 119.69753 * 179.97438 * 15 14 13 38 38 H 1.07994 * 119.68961 * 180.02562 * 16 15 14 39 39 H 1.07997 * 120.09532 * 180.02562 * 17 16 15 40 40 H 0.97003 * 120.00187 * 180.02562 * 23 22 20 41 41 H 1.09002 * 110.80474 * 46.49202 * 28 2 1 42 42 H 1.09000 * 110.80348 * 282.99150 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7274 0.0078 5 6 3.7719 -0.6500 -0.3975 6 1 3.9329 -0.7273 -1.4727 7 6 4.9003 -1.3376 0.3739 8 7 6.1904 -0.8016 -0.0670 9 6 7.3365 -1.3249 0.4117 10 8 7.3016 -2.2822 1.1617 11 6 8.6279 -0.7393 0.0278 12 6 9.8502 -1.2515 0.3383 13 6 10.8319 -0.3889 -0.2096 14 6 12.2320 -0.4023 -0.2081 15 6 12.9217 0.5935 -0.8390 16 6 12.2471 1.6213 -1.4844 17 6 10.8691 1.6560 -1.4999 18 6 10.1449 0.6530 -0.8642 19 7 8.7956 0.4173 -0.7099 20 6 7.7879 1.2032 -1.2008 21 1 6.9797 1.5114 -0.5540 22 6 7.8048 1.6044 -2.5316 23 7 7.0404 2.5962 -2.9282 24 14 8.9145 0.7332 -3.7558 25 1 10.1904 1.4817 -3.8871 26 1 9.1957 -0.6439 -3.2763 27 1 8.2400 0.6692 -5.0772 28 6 2.3936 -1.2307 0.0006 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 4.8686 -2.4105 0.1845 33 1 4.7757 -1.1532 1.4410 34 1 6.2198 -0.0702 -0.7035 35 1 10.0382 -2.1517 0.9046 36 1 12.7652 -1.1981 0.2907 37 1 14.0016 0.5812 -0.8361 38 1 12.8072 2.4010 -1.9790 39 1 10.3532 2.4592 -2.0049 40 1 7.0518 2.8760 -3.8569 41 1 2.0508 -1.9552 -0.7381 42 1 2.4341 -1.6782 0.9936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854795551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:14 Heat of formation + Delta-G solvation = 27.333654 kcal Electronic energy + Delta-G solvation = -27552.206265 eV Core-core repulsion = 23692.016816 eV Total energy + Delta-G solvation = -3860.189449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.51299 -41.32755 -40.19772 -37.80057 -36.32454 -35.37343 -34.69188 -33.15927 -32.43535 -30.85495 -30.02333 -29.28765 -27.55139 -26.75344 -24.53723 -22.92706 -22.79631 -21.90253 -20.95776 -20.76884 -20.20721 -18.35634 -17.94421 -17.65659 -17.25269 -16.71103 -16.63147 -16.45891 -16.11630 -15.81687 -15.40976 -15.29460 -14.98837 -14.72388 -14.52442 -14.35354 -14.24029 -13.96495 -13.73873 -13.69421 -13.64193 -13.26055 -13.21873 -12.84642 -12.65479 -12.48824 -12.48587 -12.30020 -11.98405 -11.59007 -11.56160 -11.33188 -11.25293 -10.50053 -10.49404 -10.19484 -9.05873 -8.87586 -8.62816 -6.69544 -0.06685 0.87115 0.87653 1.07473 1.16054 1.26693 1.31241 1.95271 1.98769 2.14429 2.29050 2.39045 2.72034 3.11191 3.12477 3.39217 3.57721 3.66644 3.82538 3.93623 4.01534 4.27822 4.35881 4.36195 4.42222 4.57537 4.57881 4.64463 4.66168 4.75017 4.76124 4.79372 4.91217 5.00605 5.09673 5.24251 5.30135 5.33978 5.35245 5.65998 5.71631 5.78930 5.96523 6.03111 6.36976 6.42271 6.44159 6.72297 7.11361 7.18782 8.20051 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.003872 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.823525 B = 7230.303427 C = 8360.900036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.097 3.903 3 N -0.346 5.346 4 O -0.237 6.237 5 C 0.024 3.976 6 H 0.085 0.915 7 C 0.127 3.873 8 N -0.724 5.724 9 C 0.591 3.409 10 O -0.573 6.573 11 C -0.039 4.039 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.072 4.072 15 C -0.152 4.152 16 C -0.108 4.108 17 C -0.142 4.142 18 C 0.047 3.953 19 N -0.299 5.299 20 C -0.380 4.380 21 H 0.094 0.906 22 C 0.066 3.934 23 N -0.853 5.853 24 Si 0.917 3.083 25 H -0.235 1.235 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.136 4.136 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.417 0.583 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.294 0.706 41 H 0.144 0.856 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.251 -7.864 0.859 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 N -0.091 5.091 4 O -0.252 6.252 5 C -0.035 4.035 6 H 0.103 0.897 7 C 0.003 3.997 8 N -0.381 5.381 9 C 0.380 3.620 10 O -0.454 6.454 11 C -0.152 4.152 12 C -0.181 4.181 13 C -0.150 4.150 14 C -0.091 4.091 15 C -0.170 4.170 16 C -0.128 4.128 17 C -0.163 4.163 18 C -0.065 4.065 19 N 0.033 4.967 20 C -0.507 4.507 21 H 0.111 0.889 22 C -0.147 4.147 23 N -0.483 5.483 24 Si 0.739 3.261 25 H -0.158 1.158 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.175 4.175 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.262 0.738 35 H 0.175 0.825 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.162 0.838 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.541 -6.921 1.134 9.590 hybrid contribution 0.170 -0.256 -0.941 0.990 sum -6.371 -7.177 0.192 9.599 Atomic orbital electron populations 1.20684 0.81780 1.05926 1.05733 1.27169 0.99949 0.91673 0.90798 1.77938 0.88794 1.25613 1.16787 1.91374 1.17197 1.28396 1.88248 1.24007 0.96781 0.82981 0.99708 0.89743 1.21546 0.80604 0.98950 0.98597 1.46714 1.05185 1.39181 1.47050 1.17218 0.83163 0.82202 0.79450 1.90681 1.87836 1.28560 1.38339 1.20619 0.95183 0.91461 1.07889 1.20804 0.89209 1.01793 1.06273 1.18437 0.94885 0.97117 1.04595 1.20656 0.90278 0.99423 0.98719 1.20903 1.00984 0.94818 1.00321 1.21146 0.91770 0.99872 0.99976 1.20293 0.95047 0.97988 1.02935 1.19024 0.84050 0.99413 1.04036 1.40250 1.03620 1.15692 1.37097 1.18946 1.04856 1.30764 0.96114 0.88900 1.25898 0.96427 0.94078 0.98263 1.69742 1.36943 1.21954 1.19676 0.86164 0.80767 0.80422 0.78719 1.15833 1.20159 1.19508 1.23170 0.88349 0.98582 1.07373 0.87350 0.90059 0.86203 0.87634 0.91314 0.73817 0.82503 0.83483 0.82443 0.83476 0.87987 0.89579 0.83848 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.49 71.24 0.75 -0.11 16 2 C 0.10 2.05 7.45 46.90 0.35 2.40 16 3 N -0.35 -11.50 12.45 -40.62 -0.51 -12.01 16 4 O -0.24 -9.42 12.24 -38.29 -0.47 -9.89 16 5 C 0.02 0.73 3.86 31.20 0.12 0.85 16 6 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 7 C 0.13 4.17 5.38 86.38 0.46 4.63 16 8 N -0.72 -30.94 5.41 -466.87 -2.53 -33.46 16 9 C 0.59 27.56 7.77 86.51 0.67 28.23 16 10 O -0.57 -27.06 16.84 -4.24 -0.07 -27.13 16 11 C -0.04 -1.88 6.77 39.91 0.27 -1.61 16 12 C -0.15 -6.80 10.55 22.63 0.24 -6.56 16 13 C -0.15 -6.27 6.16 -21.33 -0.13 -6.40 16 14 C -0.07 -2.44 10.06 22.31 0.22 -2.21 16 15 C -0.15 -4.56 9.97 22.03 0.22 -4.34 16 16 C -0.11 -3.68 10.02 22.32 0.22 -3.46 16 17 C -0.14 -6.19 7.20 22.38 0.16 -6.03 16 18 C 0.05 2.27 5.13 39.06 0.20 2.47 16 19 N -0.30 -15.33 2.29 -331.33 -0.76 -16.09 16 20 C -0.38 -20.51 7.79 84.09 0.66 -19.86 16 21 H 0.09 5.47 7.03 -2.91 -0.02 5.45 16 22 C 0.07 3.45 5.02 84.95 0.43 3.88 16 23 N -0.85 -45.95 13.95 21.67 0.30 -45.65 16 24 Si 0.92 42.24 24.64 68.60 1.69 43.93 16 25 H -0.23 -10.15 6.10 99.48 0.61 -9.55 16 26 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 C -0.14 -2.46 6.63 30.77 0.20 -2.26 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 2.96 8.12 -2.39 -0.02 2.94 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.42 19.61 4.64 -92.71 -0.43 19.18 16 35 H 0.16 6.16 8.06 -2.91 -0.02 6.14 16 36 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 39 H 0.10 4.67 6.56 -2.91 -0.02 4.65 16 40 H 0.29 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.13 1.84 7.91 -2.39 -0.02 1.82 16 Total: -1.00 -74.09 352.02 3.24 -70.85 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: 0.53 Total: 39.82 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 5.05 Total: -10.38 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -3.49 Total: -107.21 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.54 Total: -37.01 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.69 Total: 43.93 kcal Total: -74.09 3.24 -70.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854795551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.181 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds