Wall clock time and date at job start Tue Mar 31 2020 16:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.27650 * 125.76738 * 2 1 4 4 O 1.41380 * 113.17003 * 180.30296 * 3 2 1 5 5 C 1.44255 * 107.50691 * 342.62357 * 4 3 2 6 6 H 1.09006 * 111.01131 * 267.00791 * 5 4 3 7 7 C 1.52996 * 111.01021 * 143.17578 * 5 4 3 8 8 N 1.46505 * 109.46868 * 59.00757 * 7 5 4 9 9 C 1.34776 * 119.99911 * 184.91269 * 8 7 5 10 10 O 1.21669 * 119.99824 * 6.25634 * 9 8 7 11 11 C 1.46893 * 120.00063 * 186.26281 * 9 8 7 12 12 C 1.36129 * 125.43517 * 173.26615 * 11 9 8 13 13 C 1.41695 * 107.74459 * 180.22757 * 12 11 9 14 14 C 1.40020 * 133.35178 * 179.77083 * 13 12 11 15 15 C 1.36572 * 119.83316 * 179.97438 * 14 13 12 16 16 C 1.38857 * 120.60084 * 0.02562 * 15 14 13 17 17 C 1.37846 * 120.63259 * 359.97438 * 16 15 14 18 18 C 1.39085 * 119.81088 * 0.02562 * 17 16 15 19 19 N 1.37841 * 133.15981 * 180.02562 * 18 17 16 20 20 C 1.36891 * 125.61970 * 359.94806 * 19 18 17 21 21 H 1.07998 * 119.99866 * 133.65320 * 20 19 18 22 22 C 1.39017 * 120.00065 * 313.65722 * 20 19 18 23 23 N 1.31346 * 120.00017 * 351.68630 * 22 20 19 24 24 Si 1.86792 * 119.99980 * 171.69220 * 22 20 19 25 25 H 1.48498 * 109.47391 * 275.00768 * 24 22 20 26 26 H 1.48507 * 109.47512 * 35.01061 * 24 22 20 27 27 H 1.48500 * 109.47160 * 155.00602 * 24 22 20 28 28 C 1.51684 * 125.77059 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47574 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47250 * 119.98174 * 1 2 3 31 31 H 1.09001 * 109.47315 * 239.97535 * 1 2 3 32 32 H 1.08996 * 109.47275 * 299.00752 * 7 5 4 33 33 H 1.08996 * 109.47041 * 179.00652 * 7 5 4 34 34 H 0.96997 * 120.00037 * 4.90833 * 8 7 5 35 35 H 1.07995 * 126.12769 * 359.97438 * 12 11 9 36 36 H 1.08001 * 120.08414 * 359.96307 * 14 13 12 37 37 H 1.07998 * 119.70426 * 180.02562 * 15 14 13 38 38 H 1.08004 * 119.68074 * 179.97438 * 16 15 14 39 39 H 1.08001 * 120.09201 * 179.97438 * 17 16 15 40 40 H 0.96994 * 120.00096 * 175.03542 * 23 22 20 41 41 H 1.09000 * 110.80388 * 77.06043 * 28 2 1 42 42 H 1.09000 * 110.80841 * 313.54656 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2530 1.0357 0.0000 4 8 3.6328 0.7274 -0.0069 5 6 3.7717 -0.6498 0.3991 6 1 3.9324 -0.7260 1.4746 7 6 4.9005 -1.3377 -0.3713 8 7 6.1592 -0.6277 -0.1306 9 6 7.2769 -0.9962 -0.7874 10 8 7.2184 -1.8403 -1.6617 11 6 8.5657 -0.3787 -0.4477 12 6 9.7763 -0.7550 -0.9437 13 6 10.7602 0.0839 -0.3641 14 6 12.1525 0.1619 -0.4906 15 6 12.8472 1.1023 0.2152 16 6 12.1855 1.9839 1.0596 17 6 10.8154 1.9267 1.2008 18 6 10.0864 0.9775 0.4923 19 7 8.7424 0.6793 0.4237 20 6 7.7473 1.3216 1.1101 21 1 6.8457 1.6232 0.5976 22 6 7.8972 1.5857 2.4667 23 7 8.9141 1.0792 3.1259 24 14 6.6525 2.6609 3.3520 25 1 7.0199 4.0892 3.1785 26 1 5.3011 2.4248 2.7833 27 1 6.6467 2.3234 4.7981 28 6 2.3936 -1.2307 0.0006 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5135 -0.8901 31 1 -0.3634 -0.5142 0.8898 32 1 4.6737 -1.3240 -1.4373 33 1 4.9949 -2.3695 -0.0331 34 1 6.1881 0.1076 0.5013 35 1 9.9552 -1.5529 -1.6492 36 1 12.6757 -0.5200 -1.1445 37 1 13.9210 1.1609 0.1158 38 1 12.7496 2.7216 1.6111 39 1 10.3097 2.6164 1.8603 40 1 9.0593 1.3209 4.0539 41 1 2.4348 -1.6786 -0.9923 42 1 2.0504 -1.9549 0.7394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854795552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:20 Heat of formation + Delta-G solvation = 42.682295 kcal Electronic energy + Delta-G solvation = -27543.598482 eV Core-core repulsion = 23684.074599 eV Total energy + Delta-G solvation = -3859.523882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.54506 -40.24349 -38.42956 -35.91524 -34.86802 -33.76539 -33.46166 -31.27930 -30.69696 -29.00483 -28.63201 -28.15361 -26.21918 -25.01165 -22.87832 -21.70946 -20.98228 -20.16033 -19.77154 -19.23118 -18.18147 -16.85504 -16.53958 -16.16104 -15.61558 -15.41503 -14.82544 -14.74766 -14.64326 -14.45920 -13.90093 -13.56197 -13.41837 -13.19861 -13.03964 -13.01112 -12.92415 -12.72909 -12.47785 -12.13849 -11.95385 -11.82630 -11.67543 -11.51041 -11.37167 -11.19759 -10.74978 -10.71061 -10.62064 -10.17848 -9.77841 -9.49799 -9.43860 -9.26027 -8.64661 -8.53535 -7.19316 -6.85439 -6.53548 -4.71572 1.68427 1.84506 2.76816 2.94523 2.96689 2.99483 3.03525 3.14342 3.59496 3.74203 4.01636 4.23896 4.31962 4.46613 4.55576 4.62953 4.71839 4.94011 5.07765 5.09673 5.12175 5.20652 5.37039 5.42348 5.62150 5.76696 5.82234 5.92634 5.96101 5.96793 6.17473 6.43777 6.57209 6.69980 6.86258 6.91193 6.96436 7.10792 7.12764 7.33481 7.48864 7.58253 7.65640 7.92753 7.94815 8.21636 8.33524 8.67859 8.94765 9.28454 10.14898 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.004047 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.514893 B = 6917.595714 C = 8439.103183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.073 3.927 3 N -0.290 5.290 4 O -0.185 6.185 5 C 0.029 3.971 6 H 0.095 0.905 7 C 0.128 3.872 8 N -0.725 5.725 9 C 0.598 3.402 10 O -0.560 6.560 11 C -0.015 4.015 12 C -0.164 4.164 13 C -0.133 4.133 14 C -0.085 4.085 15 C -0.161 4.161 16 C -0.144 4.144 17 C -0.058 4.058 18 C 0.109 3.891 19 N -0.260 5.260 20 C -0.377 4.377 21 H 0.109 0.891 22 C 0.063 3.937 23 N -0.818 5.818 24 Si 0.919 3.081 25 H -0.266 1.266 26 H -0.256 1.256 27 H -0.276 1.276 28 C -0.145 4.145 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.421 0.579 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.283 0.717 41 H 0.106 0.894 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 -2.701 -0.756 11.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 N -0.031 5.031 4 O -0.204 6.204 5 C -0.030 4.030 6 H 0.113 0.887 7 C 0.003 3.997 8 N -0.386 5.386 9 C 0.388 3.612 10 O -0.440 6.440 11 C -0.130 4.130 12 C -0.192 4.192 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.180 4.180 16 C -0.165 4.165 17 C -0.078 4.078 18 C -0.006 4.006 19 N 0.075 4.925 20 C -0.504 4.504 21 H 0.126 0.874 22 C -0.152 4.152 23 N -0.446 5.446 24 Si 0.742 3.258 25 H -0.190 1.190 26 H -0.180 1.180 27 H -0.201 1.201 28 C -0.185 4.185 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.267 0.733 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.699 -1.994 -0.966 11.907 hybrid contribution -0.366 -0.169 1.086 1.159 sum -12.065 -2.163 0.120 12.258 Atomic orbital electron populations 1.20402 0.85442 1.04547 1.03862 1.26261 0.98098 0.92292 0.95381 1.77901 0.89718 1.23472 1.12053 1.91379 1.14813 1.26619 1.87576 1.23987 0.94990 0.83522 1.00520 0.88711 1.21308 0.82808 0.95565 1.00042 1.46568 1.07293 1.38325 1.46385 1.17256 0.82639 0.81121 0.80171 1.90708 1.86553 1.34695 1.32037 1.20110 0.93787 0.95249 1.03866 1.20381 0.89868 1.03284 1.05667 1.18034 0.93249 1.00309 1.02226 1.20062 0.91964 0.98525 0.99813 1.20268 0.98265 0.98590 1.00909 1.20577 0.93587 1.00852 1.01480 1.20034 0.92556 0.97579 0.97621 1.18270 0.84220 0.98538 0.99581 1.39917 1.04386 1.19646 1.28506 1.19544 0.99487 1.39951 0.91431 0.87371 1.25668 0.97648 0.95603 0.96248 1.69932 1.27617 1.35569 1.11472 0.86034 0.80952 0.80278 0.78549 1.19049 1.17997 1.20117 1.23095 0.91592 0.98593 1.05244 0.90019 0.89334 0.89436 0.90725 0.90269 0.73275 0.84978 0.87719 0.87882 0.87653 0.86941 0.90647 0.87575 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.49 36.00 0.38 -0.13 16 2 C 0.07 0.77 7.45 -78.57 -0.59 0.19 16 3 N -0.29 -4.38 12.45 35.65 0.44 -3.94 16 4 O -0.18 -3.23 12.08 -11.36 -0.14 -3.36 16 5 C 0.03 0.40 3.91 -25.80 -0.10 0.30 16 6 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 7 C 0.13 2.01 5.47 -4.04 -0.02 1.99 16 8 N -0.72 -14.66 5.39 -61.55 -0.33 -14.99 16 9 C 0.60 13.85 7.76 -12.76 -0.10 13.75 16 10 O -0.56 -13.49 16.83 5.22 0.09 -13.40 16 11 C -0.02 -0.38 6.77 -82.25 -0.56 -0.94 16 12 C -0.16 -3.92 10.55 -39.02 -0.41 -4.33 16 13 C -0.13 -3.19 6.16 -106.90 -0.66 -3.85 16 14 C -0.08 -1.76 10.06 -39.52 -0.40 -2.16 16 15 C -0.16 -3.13 9.97 -39.95 -0.40 -3.53 16 16 C -0.14 -2.95 10.02 -39.50 -0.40 -3.35 16 17 C -0.06 -1.37 8.66 -39.41 -0.34 -1.71 16 18 C 0.11 2.76 6.03 -83.83 -0.51 2.25 16 19 N -0.26 -6.65 2.78 -56.08 -0.16 -6.81 16 20 C -0.38 -9.27 7.63 -15.00 -0.11 -9.39 16 21 H 0.11 2.60 6.48 -52.49 -0.34 2.26 16 22 C 0.06 1.49 4.77 -17.47 -0.08 1.41 16 23 N -0.82 -20.48 11.08 55.50 0.62 -19.86 16 24 Si 0.92 18.35 29.56 -169.99 -5.03 13.33 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 28 C -0.15 -1.37 6.63 -26.46 -0.18 -1.55 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 1.18 7.99 -51.93 -0.41 0.76 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.42 8.90 4.31 -40.82 -0.18 8.72 16 35 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.11 2.69 6.89 -52.49 -0.36 2.32 16 40 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.11 0.88 7.84 -51.93 -0.41 0.47 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -31.58 356.73 -8.66 -40.24 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.06 Total: 14.48 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -4.47 Total: -11.06 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.57 Total: -45.60 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.05 Total: -16.77 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.58 -8.66 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854795552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.918 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds