Wall clock time and date at job start Tue Mar 31 2020 16:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.27650 * 125.76738 * 2 1 4 4 O 1.41380 * 113.17003 * 180.30296 * 3 2 1 5 5 C 1.44255 * 107.50691 * 342.62357 * 4 3 2 6 6 H 1.09006 * 111.01131 * 267.00791 * 5 4 3 7 7 C 1.52996 * 111.01021 * 143.17578 * 5 4 3 8 8 N 1.46505 * 109.46868 * 59.00757 * 7 5 4 9 9 C 1.34776 * 119.99911 * 184.91269 * 8 7 5 10 10 O 1.21669 * 119.99824 * 6.25634 * 9 8 7 11 11 C 1.46893 * 120.00063 * 186.26281 * 9 8 7 12 12 C 1.36129 * 125.43517 * 173.26615 * 11 9 8 13 13 C 1.41695 * 107.74459 * 180.22757 * 12 11 9 14 14 C 1.40020 * 133.35178 * 179.77083 * 13 12 11 15 15 C 1.36572 * 119.83316 * 179.97438 * 14 13 12 16 16 C 1.38857 * 120.60084 * 0.02562 * 15 14 13 17 17 C 1.37846 * 120.63259 * 359.97438 * 16 15 14 18 18 C 1.39085 * 119.81088 * 0.02562 * 17 16 15 19 19 N 1.37841 * 133.15981 * 180.02562 * 18 17 16 20 20 C 1.36891 * 125.61970 * 359.94806 * 19 18 17 21 21 H 1.07998 * 119.99866 * 133.65320 * 20 19 18 22 22 C 1.39017 * 120.00065 * 313.65722 * 20 19 18 23 23 N 1.31346 * 120.00017 * 351.68630 * 22 20 19 24 24 Si 1.86792 * 119.99980 * 171.69220 * 22 20 19 25 25 H 1.48498 * 109.47391 * 275.00768 * 24 22 20 26 26 H 1.48507 * 109.47512 * 35.01061 * 24 22 20 27 27 H 1.48500 * 109.47160 * 155.00602 * 24 22 20 28 28 C 1.51684 * 125.77059 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47574 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47250 * 119.98174 * 1 2 3 31 31 H 1.09001 * 109.47315 * 239.97535 * 1 2 3 32 32 H 1.08996 * 109.47275 * 299.00752 * 7 5 4 33 33 H 1.08996 * 109.47041 * 179.00652 * 7 5 4 34 34 H 0.96997 * 120.00037 * 4.90833 * 8 7 5 35 35 H 1.07995 * 126.12769 * 359.97438 * 12 11 9 36 36 H 1.08001 * 120.08414 * 359.96307 * 14 13 12 37 37 H 1.07998 * 119.70426 * 180.02562 * 15 14 13 38 38 H 1.08004 * 119.68074 * 179.97438 * 16 15 14 39 39 H 1.08001 * 120.09201 * 179.97438 * 17 16 15 40 40 H 0.96994 * 120.00096 * 175.03542 * 23 22 20 41 41 H 1.09000 * 110.80388 * 77.06043 * 28 2 1 42 42 H 1.09000 * 110.80841 * 313.54656 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2530 1.0357 0.0000 4 8 3.6328 0.7274 -0.0069 5 6 3.7717 -0.6498 0.3991 6 1 3.9324 -0.7260 1.4746 7 6 4.9005 -1.3377 -0.3713 8 7 6.1592 -0.6277 -0.1306 9 6 7.2769 -0.9962 -0.7874 10 8 7.2184 -1.8403 -1.6617 11 6 8.5657 -0.3787 -0.4477 12 6 9.7763 -0.7550 -0.9437 13 6 10.7602 0.0839 -0.3641 14 6 12.1525 0.1619 -0.4906 15 6 12.8472 1.1023 0.2152 16 6 12.1855 1.9839 1.0596 17 6 10.8154 1.9267 1.2008 18 6 10.0864 0.9775 0.4923 19 7 8.7424 0.6793 0.4237 20 6 7.7473 1.3216 1.1101 21 1 6.8457 1.6232 0.5976 22 6 7.8972 1.5857 2.4667 23 7 8.9141 1.0792 3.1259 24 14 6.6525 2.6609 3.3520 25 1 7.0199 4.0892 3.1785 26 1 5.3011 2.4248 2.7833 27 1 6.6467 2.3234 4.7981 28 6 2.3936 -1.2307 0.0006 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5135 -0.8901 31 1 -0.3634 -0.5142 0.8898 32 1 4.6737 -1.3240 -1.4373 33 1 4.9949 -2.3695 -0.0331 34 1 6.1881 0.1076 0.5013 35 1 9.9552 -1.5529 -1.6492 36 1 12.6757 -0.5200 -1.1445 37 1 13.9210 1.1609 0.1158 38 1 12.7496 2.7216 1.6111 39 1 10.3097 2.6164 1.8603 40 1 9.0593 1.3209 4.0539 41 1 2.4348 -1.6786 -0.9923 42 1 2.0504 -1.9549 0.7394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854795552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:19 Heat of formation + Delta-G solvation = 23.140197 kcal Electronic energy + Delta-G solvation = -27544.445891 eV Core-core repulsion = 23684.074599 eV Total energy + Delta-G solvation = -3860.371291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.25765 -41.32086 -40.11747 -37.62557 -36.29643 -35.35656 -34.68400 -32.63381 -32.34415 -30.68433 -29.83286 -29.29222 -27.50172 -26.84259 -24.43330 -22.88677 -22.73455 -21.78272 -20.99076 -20.74625 -19.93563 -18.22025 -17.91698 -17.43409 -17.25759 -16.70356 -16.52429 -16.32154 -16.14820 -15.81110 -15.22547 -15.06939 -14.76352 -14.64220 -14.44777 -14.25270 -14.19651 -13.78607 -13.63251 -13.53294 -13.46497 -13.25796 -13.11346 -12.90510 -12.68568 -12.46306 -12.35331 -12.22746 -11.91352 -11.59270 -11.47986 -11.22333 -11.05393 -10.50418 -10.41834 -10.15824 -8.98576 -8.65435 -8.31761 -6.59927 0.08608 0.86072 1.08663 1.31971 1.32863 1.37046 1.44438 1.92894 2.05390 2.21425 2.44489 2.75543 2.85490 3.13563 3.33897 3.37613 3.59128 3.67257 3.84649 4.01779 4.20808 4.37962 4.41561 4.45739 4.53272 4.57472 4.64990 4.72506 4.73541 4.78561 4.82790 4.90667 4.98739 5.03265 5.17516 5.30100 5.32917 5.38277 5.42951 5.72893 5.87912 5.94035 6.17452 6.23007 6.40923 6.48147 6.54760 6.86793 7.18189 7.45278 8.34675 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.004047 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.514893 B = 6917.595714 C = 8439.103183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.099 3.901 3 N -0.345 5.345 4 O -0.237 6.237 5 C 0.023 3.977 6 H 0.092 0.908 7 C 0.125 3.875 8 N -0.722 5.722 9 C 0.593 3.407 10 O -0.579 6.579 11 C -0.046 4.046 12 C -0.173 4.173 13 C -0.155 4.155 14 C -0.088 4.088 15 C -0.154 4.154 16 C -0.131 4.131 17 C -0.090 4.090 18 C 0.079 3.921 19 N -0.275 5.275 20 C -0.392 4.392 21 H 0.103 0.897 22 C 0.033 3.967 23 N -0.847 5.847 24 Si 0.982 3.018 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.267 1.267 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.416 0.584 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.286 0.714 41 H 0.123 0.877 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.259 -3.326 -0.314 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 N -0.091 5.091 4 O -0.252 6.252 5 C -0.035 4.035 6 H 0.110 0.890 7 C 0.001 3.999 8 N -0.380 5.380 9 C 0.382 3.618 10 O -0.460 6.460 11 C -0.160 4.160 12 C -0.201 4.201 13 C -0.160 4.160 14 C -0.107 4.107 15 C -0.172 4.172 16 C -0.151 4.151 17 C -0.110 4.110 18 C -0.036 4.036 19 N 0.059 4.941 20 C -0.519 4.519 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.476 5.476 24 Si 0.802 3.198 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.191 1.191 28 C -0.176 4.176 29 H 0.095 0.905 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.261 0.739 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.141 0.859 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.373 -2.630 -0.524 12.660 hybrid contribution -0.139 -0.012 0.906 0.917 sum -12.511 -2.642 0.382 12.793 Atomic orbital electron populations 1.20690 0.81859 1.05196 1.06468 1.27142 0.99910 0.91649 0.90687 1.77942 0.88729 1.25439 1.16950 1.91331 1.17262 1.28241 1.88353 1.24048 0.96583 0.82982 0.99926 0.89032 1.21584 0.81545 0.96321 1.00446 1.46602 1.08181 1.37955 1.45229 1.17223 0.83092 0.81079 0.80403 1.90666 1.86903 1.35587 1.32891 1.20547 0.95032 0.95933 1.04498 1.20643 0.89961 1.03646 1.05832 1.18431 0.94859 1.00264 1.02434 1.20493 0.90706 0.99315 1.00177 1.20761 1.00423 0.96933 0.99102 1.21043 0.92468 1.00948 1.00653 1.20126 0.94031 0.98090 0.98717 1.18773 0.84485 0.99679 1.00646 1.40091 1.04821 1.20089 1.29050 1.19692 0.99622 1.40518 0.92026 0.87933 1.26375 0.98951 0.96233 0.96284 1.70009 1.29089 1.36670 1.11838 0.85110 0.78471 0.78561 0.77620 1.18793 1.18311 1.19134 1.23172 0.88459 0.98681 1.07310 0.90460 0.86601 0.86522 0.90971 0.88402 0.73874 0.83751 0.84616 0.83375 0.84346 0.88411 0.90332 0.85880 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.49 71.23 0.75 0.03 16 2 C 0.10 1.88 7.45 46.89 0.35 2.23 16 3 N -0.34 -10.45 12.45 -40.62 -0.51 -10.96 16 4 O -0.24 -8.58 12.08 -38.29 -0.46 -9.04 16 5 C 0.02 0.65 3.91 31.20 0.12 0.77 16 6 H 0.09 2.49 8.14 -2.38 -0.02 2.48 16 7 C 0.13 3.98 5.47 86.38 0.47 4.46 16 8 N -0.72 -30.55 5.39 -466.88 -2.52 -33.07 16 9 C 0.59 28.70 7.76 86.51 0.67 29.37 16 10 O -0.58 -28.78 16.83 -4.25 -0.07 -28.85 16 11 C -0.05 -2.38 6.77 39.91 0.27 -2.11 16 12 C -0.17 -8.51 10.55 22.63 0.24 -8.27 16 13 C -0.16 -7.52 6.16 -21.34 -0.13 -7.65 16 14 C -0.09 -3.50 10.06 22.31 0.22 -3.27 16 15 C -0.15 -5.48 9.97 22.03 0.22 -5.26 16 16 C -0.13 -5.11 10.02 22.33 0.22 -4.89 16 17 C -0.09 -4.28 8.66 22.38 0.19 -4.09 16 18 C 0.08 4.10 6.03 39.06 0.24 4.34 16 19 N -0.28 -14.77 2.78 -331.33 -0.92 -15.69 16 20 C -0.39 -20.26 7.63 84.09 0.64 -19.62 16 21 H 0.10 5.26 6.48 -2.91 -0.02 5.24 16 22 C 0.03 1.62 4.77 84.95 0.40 2.02 16 23 N -0.85 -43.67 11.08 21.67 0.24 -43.43 16 24 Si 0.98 38.80 29.56 68.60 2.03 40.83 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 27 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 28 C -0.14 -2.25 6.63 30.77 0.20 -2.05 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 2.32 7.99 -2.39 -0.02 2.30 16 33 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.42 18.65 4.31 -92.71 -0.40 18.25 16 35 H 0.14 6.49 8.06 -2.91 -0.02 6.46 16 36 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.10 4.84 6.89 -2.91 -0.02 4.82 16 40 H 0.29 13.67 8.31 -92.71 -0.77 12.90 16 41 H 0.12 1.69 7.84 -2.39 -0.02 1.67 16 42 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -73.78 356.73 3.54 -70.24 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: 0.66 Total: 43.95 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 5.09 Total: -13.99 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -3.70 Total: -103.14 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.53 Total: -37.89 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -73.78 3.54 -70.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854795552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.382 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds