Wall clock time and date at job start Tue Mar 31 2020 14:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38217 * 120.40796 * 2 1 4 4 C 1.39491 * 118.33425 * 179.97438 * 3 2 1 5 5 N 1.39051 * 120.51969 * 179.97438 * 4 3 2 6 6 C 1.34774 * 119.99783 * 174.89393 * 5 4 3 7 7 O 1.21267 * 120.00250 * 5.10418 * 6 5 4 8 8 C 1.50706 * 120.00027 * 185.10435 * 6 5 4 9 9 C 1.50700 * 109.47076 * 180.02562 * 8 6 5 10 10 C 1.38327 * 119.96537 * 270.02221 * 9 8 6 11 11 C 1.38283 * 120.13534 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06944 * 359.76151 * 11 10 9 13 13 C 1.38852 * 119.93270 * 0.51091 * 12 11 10 14 14 O 1.35752 * 120.07305 * 179.74528 * 13 12 11 15 15 C 1.34832 * 116.99427 * 354.16928 * 14 13 12 16 16 H 1.08000 * 120.00269 * 5.04436 * 15 14 13 17 17 C 1.38656 * 119.99932 * 185.03350 * 15 14 13 18 18 N 1.31559 * 119.99833 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00249 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46997 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47009 * 120.00240 * 19 17 15 22 22 H 1.48500 * 109.47518 * 240.00355 * 19 17 15 23 23 C 1.38083 * 119.96431 * 89.99750 * 9 8 6 24 24 N 1.32916 * 118.95571 * 0.24905 * 4 3 2 25 25 C 1.31740 * 120.70856 * 359.49019 * 24 4 3 26 26 C 1.50700 * 119.09086 * 180.26507 * 25 24 4 27 27 N 1.31807 * 121.82236 * 0.52279 * 25 24 4 28 28 H 1.08992 * 109.47249 * 89.99934 * 1 2 3 29 29 H 1.08999 * 109.47297 * 210.00747 * 1 2 3 30 30 H 1.09007 * 109.46568 * 329.99877 * 1 2 3 31 31 H 1.08002 * 120.83310 * 359.95251 * 3 2 1 32 32 H 0.96993 * 120.00464 * 354.90130 * 5 4 3 33 33 H 1.08994 * 109.47114 * 60.00275 * 8 6 5 34 34 H 1.09001 * 109.46656 * 299.99761 * 8 6 5 35 35 H 1.07992 * 119.93000 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.95834 * 180.02562 * 11 10 9 37 37 H 1.08006 * 120.03300 * 180.27730 * 12 11 10 38 38 H 0.96999 * 120.00263 * 179.97438 * 18 17 15 39 39 H 1.07990 * 120.03582 * 0.04773 * 23 9 8 40 40 H 1.08999 * 109.46948 * 270.25386 * 26 25 24 41 41 H 1.09002 * 109.46629 * 30.25523 * 26 25 24 42 42 H 1.08997 * 109.46592 * 150.25216 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2066 1.1920 0.0000 4 6 3.6006 1.1416 0.0005 5 7 4.3497 2.3131 0.0000 6 6 5.6921 2.2546 0.1045 7 8 6.2540 1.1800 0.1056 8 6 6.4950 3.5248 0.2198 9 6 7.9598 3.1856 0.3219 10 6 8.5367 2.9810 1.5624 11 6 9.8804 2.6691 1.6601 12 6 10.6494 2.5561 0.5185 13 6 10.0745 2.7665 -0.7278 14 8 10.8290 2.6612 -1.8515 15 6 12.1530 2.4695 -1.6839 16 1 12.5566 2.3250 -0.6927 17 6 12.9965 2.4578 -2.7843 18 7 12.5050 2.6342 -3.9918 19 14 14.8308 2.1915 -2.5524 20 1 15.1271 2.0189 -1.1076 21 1 15.2519 0.9749 -3.2925 22 1 15.5717 3.3686 -3.0728 23 6 8.7244 3.0789 -0.8229 24 7 4.2016 -0.0440 -0.0040 25 6 3.4956 -1.1562 0.0011 26 6 4.2147 -2.4805 0.0018 27 7 2.1776 -1.1427 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5139 31 1 1.6870 2.1389 -0.0008 32 1 3.9061 3.1724 -0.0754 33 1 6.1851 4.0708 1.1108 34 1 6.3261 4.1426 -0.6622 35 1 7.9366 3.0651 2.4562 36 1 10.3278 2.5096 2.6301 37 1 11.6978 2.3081 0.5953 38 1 13.0951 2.6263 -4.7617 39 1 8.2735 3.2391 -1.7910 40 1 4.3885 -2.8001 -1.0257 41 1 5.1700 -2.3749 0.5160 42 1 3.6057 -3.2243 0.5156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876184586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:43 Heat of formation + Delta-G solvation = 19.094560 kcal Electronic energy + Delta-G solvation = -26108.665802 eV Core-core repulsion = 22248.119079 eV Total energy + Delta-G solvation = -3860.546723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46074 -39.80474 -38.79039 -36.58063 -35.51376 -34.54284 -32.61612 -32.22187 -31.59656 -29.36381 -29.20216 -28.34689 -27.17769 -25.25091 -23.46361 -22.59197 -21.65050 -21.18339 -20.37613 -18.10137 -17.77247 -17.44495 -16.84613 -16.27746 -15.93196 -15.67909 -15.24831 -14.94080 -14.59069 -14.33667 -14.32329 -13.96826 -13.63906 -13.48256 -13.43121 -13.13084 -12.82326 -12.74749 -12.53356 -12.40763 -12.35591 -11.90114 -11.57483 -11.26604 -11.24717 -10.93658 -10.82663 -10.77088 -10.60637 -10.40697 -10.14787 -9.91398 -9.31021 -9.03291 -8.92203 -8.80934 -8.06175 -7.19492 -6.41111 -4.00017 0.74997 0.98492 2.04088 2.40409 2.66853 2.68072 3.15008 3.16105 3.21833 3.67013 3.78909 3.92820 3.99597 4.38468 4.56341 4.75857 4.81210 4.88176 5.05753 5.11336 5.16206 5.17911 5.21296 5.28612 5.45142 5.49791 5.52689 5.61352 5.65928 5.75655 5.79253 5.94514 6.02683 6.19384 6.35510 6.44884 6.62709 6.71591 6.93443 7.10076 7.24534 7.26748 7.39323 7.46666 7.84325 8.02041 8.04050 8.21392 9.04755 9.75537 10.77246 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.002383 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.056395 B =11747.272572 C =12268.522522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.196 3.804 3 C -0.279 4.279 4 C 0.415 3.585 5 N -0.662 5.662 6 C 0.499 3.501 7 O -0.440 6.440 8 C -0.089 4.089 9 C -0.038 4.038 10 C -0.195 4.195 11 C -0.074 4.074 12 C -0.228 4.228 13 C 0.154 3.846 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.172 4.172 24 N -0.514 5.514 25 C 0.353 3.647 26 C -0.085 4.085 27 N -0.548 5.548 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.419 0.581 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.269 0.731 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.102 -0.092 9.392 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.051 3.949 3 C -0.305 4.305 4 C 0.175 3.825 5 N -0.310 5.310 6 C 0.284 3.716 7 O -0.304 6.304 8 C -0.129 4.129 9 C -0.038 4.038 10 C -0.214 4.214 11 C -0.093 4.093 12 C -0.248 4.248 13 C 0.101 3.899 14 O -0.083 6.083 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.192 4.192 24 N -0.236 5.236 25 C 0.085 3.915 26 C -0.143 4.143 27 N -0.268 5.268 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.256 0.744 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.026 -1.648 8.922 22.900 hybrid contribution 0.280 1.268 0.054 1.300 sum -20.746 -0.380 8.976 22.608 Atomic orbital electron populations 1.20751 0.87800 1.03918 1.03612 1.21435 0.97328 0.87515 0.88630 1.22012 0.93162 1.01185 1.14116 1.18735 0.87875 0.87124 0.88795 1.43872 1.07858 1.06949 1.72334 1.21221 0.80838 0.92709 0.76782 1.90881 1.68644 1.30132 1.40791 1.20600 0.92996 0.94528 1.04794 1.18602 0.91688 1.00236 0.93317 1.20340 0.95324 1.10063 0.95654 1.20678 0.93644 0.97745 0.97205 1.21188 1.01181 1.10169 0.92218 1.19267 0.91209 0.92374 0.87040 1.83979 1.19913 1.78118 1.26291 1.21369 0.79375 1.50728 0.95159 0.89050 1.25284 1.00235 0.96742 0.94337 1.70052 1.35822 1.46004 0.98059 0.85648 0.80730 0.78252 0.78794 1.19111 1.20172 1.20184 1.19941 0.92173 1.09455 0.97609 1.68338 1.40169 0.96941 1.18171 1.23231 0.86086 0.94304 0.87917 1.20584 1.00234 0.89422 1.04090 1.68132 1.09675 1.30045 1.18899 0.89722 0.89917 0.90244 0.83719 0.74439 0.87972 0.87865 0.87945 0.87435 0.85568 0.92143 0.86812 0.89457 0.89192 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.22 36.01 0.37 -0.25 16 2 C 0.20 1.98 6.82 -82.31 -0.56 1.42 16 3 C -0.28 -2.67 9.72 -39.12 -0.38 -3.05 16 4 C 0.41 5.34 7.45 -154.40 -1.15 4.19 16 5 N -0.66 -7.19 5.38 -11.28 -0.06 -7.25 16 6 C 0.50 7.28 7.78 -10.98 -0.09 7.19 16 7 O -0.44 -8.75 14.35 5.57 0.08 -8.67 16 8 C -0.09 -1.12 5.83 -29.03 -0.17 -1.29 16 9 C -0.04 -0.68 4.37 -104.65 -0.46 -1.14 16 10 C -0.19 -3.50 9.70 -39.53 -0.38 -3.88 16 11 C -0.07 -1.43 10.04 -39.61 -0.40 -1.83 16 12 C -0.23 -5.17 9.17 -39.40 -0.36 -5.53 16 13 C 0.15 3.87 6.65 -39.11 -0.26 3.62 16 14 O -0.18 -5.26 9.76 0.04 0.00 -5.26 16 15 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 16 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 19 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 C -0.17 -3.76 9.65 -39.39 -0.38 -4.14 16 24 N -0.51 -8.17 7.95 -9.89 -0.08 -8.25 16 25 C 0.35 4.93 7.64 -157.23 -1.20 3.73 16 26 C -0.08 -0.95 10.32 36.01 0.37 -0.58 16 27 N -0.55 -6.92 10.27 -7.05 -0.07 -6.99 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.30 8.09 -51.92 -0.42 -0.12 16 31 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.42 2.52 8.72 -40.82 -0.36 2.16 16 33 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -37.86 367.66 -8.83 -46.70 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.13 Total: 4.78 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -4.85 Total: -11.45 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.55 Total: -47.55 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.86 -8.83 -46.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876184586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.790 kcal (2) G-P(sol) polarization free energy of solvation -37.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds