Wall clock time and date at job start Tue Mar 31 2020 14:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38217 * 120.40796 * 2 1 4 4 C 1.39491 * 118.33425 * 179.97438 * 3 2 1 5 5 N 1.39051 * 120.51969 * 179.97438 * 4 3 2 6 6 C 1.34774 * 119.99783 * 174.89393 * 5 4 3 7 7 O 1.21267 * 120.00250 * 5.10418 * 6 5 4 8 8 C 1.50706 * 120.00027 * 185.10435 * 6 5 4 9 9 C 1.50700 * 109.47076 * 180.02562 * 8 6 5 10 10 C 1.38327 * 119.96537 * 270.02221 * 9 8 6 11 11 C 1.38283 * 120.13534 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06944 * 359.76151 * 11 10 9 13 13 C 1.38852 * 119.93270 * 0.51091 * 12 11 10 14 14 O 1.35752 * 120.07305 * 179.74528 * 13 12 11 15 15 C 1.34832 * 116.99427 * 354.16928 * 14 13 12 16 16 H 1.08000 * 120.00269 * 5.04436 * 15 14 13 17 17 C 1.38656 * 119.99932 * 185.03350 * 15 14 13 18 18 N 1.31559 * 119.99833 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00249 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46997 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47009 * 120.00240 * 19 17 15 22 22 H 1.48500 * 109.47518 * 240.00355 * 19 17 15 23 23 C 1.38083 * 119.96431 * 89.99750 * 9 8 6 24 24 N 1.32916 * 118.95571 * 0.24905 * 4 3 2 25 25 C 1.31740 * 120.70856 * 359.49019 * 24 4 3 26 26 C 1.50700 * 119.09086 * 180.26507 * 25 24 4 27 27 N 1.31807 * 121.82236 * 0.52279 * 25 24 4 28 28 H 1.08992 * 109.47249 * 89.99934 * 1 2 3 29 29 H 1.08999 * 109.47297 * 210.00747 * 1 2 3 30 30 H 1.09007 * 109.46568 * 329.99877 * 1 2 3 31 31 H 1.08002 * 120.83310 * 359.95251 * 3 2 1 32 32 H 0.96993 * 120.00464 * 354.90130 * 5 4 3 33 33 H 1.08994 * 109.47114 * 60.00275 * 8 6 5 34 34 H 1.09001 * 109.46656 * 299.99761 * 8 6 5 35 35 H 1.07992 * 119.93000 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.95834 * 180.02562 * 11 10 9 37 37 H 1.08006 * 120.03300 * 180.27730 * 12 11 10 38 38 H 0.96999 * 120.00263 * 179.97438 * 18 17 15 39 39 H 1.07990 * 120.03582 * 0.04773 * 23 9 8 40 40 H 1.08999 * 109.46948 * 270.25386 * 26 25 24 41 41 H 1.09002 * 109.46629 * 30.25523 * 26 25 24 42 42 H 1.08997 * 109.46592 * 150.25216 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2066 1.1920 0.0000 4 6 3.6006 1.1416 0.0005 5 7 4.3497 2.3131 0.0000 6 6 5.6921 2.2546 0.1045 7 8 6.2540 1.1800 0.1056 8 6 6.4950 3.5248 0.2198 9 6 7.9598 3.1856 0.3219 10 6 8.5367 2.9810 1.5624 11 6 9.8804 2.6691 1.6601 12 6 10.6494 2.5561 0.5185 13 6 10.0745 2.7665 -0.7278 14 8 10.8290 2.6612 -1.8515 15 6 12.1530 2.4695 -1.6839 16 1 12.5566 2.3250 -0.6927 17 6 12.9965 2.4578 -2.7843 18 7 12.5050 2.6342 -3.9918 19 14 14.8308 2.1915 -2.5524 20 1 15.1271 2.0189 -1.1076 21 1 15.2519 0.9749 -3.2925 22 1 15.5717 3.3686 -3.0728 23 6 8.7244 3.0789 -0.8229 24 7 4.2016 -0.0440 -0.0040 25 6 3.4956 -1.1562 0.0011 26 6 4.2147 -2.4805 0.0018 27 7 2.1776 -1.1427 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5139 31 1 1.6870 2.1389 -0.0008 32 1 3.9061 3.1724 -0.0754 33 1 6.1851 4.0708 1.1108 34 1 6.3261 4.1426 -0.6622 35 1 7.9366 3.0651 2.4562 36 1 10.3278 2.5096 2.6301 37 1 11.6978 2.3081 0.5953 38 1 13.0951 2.6263 -4.7617 39 1 8.2735 3.2391 -1.7910 40 1 4.3885 -2.8001 -1.0257 41 1 5.1700 -2.3749 0.5160 42 1 3.6057 -3.2243 0.5156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876184586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:42 Heat of formation + Delta-G solvation = -6.820424 kcal Electronic energy + Delta-G solvation = -26109.789560 eV Core-core repulsion = 22248.119079 eV Total energy + Delta-G solvation = -3861.670481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.37034 -41.07774 -40.38100 -38.27380 -36.59296 -35.34816 -34.35976 -33.73310 -32.76720 -30.89898 -30.07694 -29.26530 -28.44720 -27.27343 -24.49482 -23.48038 -23.25773 -22.58699 -21.60367 -19.60740 -19.01804 -18.76916 -18.42532 -17.24901 -16.99429 -16.73430 -16.43009 -16.42220 -16.12351 -15.79309 -15.60054 -15.40736 -15.00095 -14.85869 -14.37653 -14.22945 -14.03047 -13.89089 -13.69914 -13.51925 -13.33623 -13.05858 -12.99552 -12.83077 -12.50585 -12.40470 -12.25704 -12.18776 -12.09129 -11.78127 -11.28747 -11.21476 -10.82278 -10.81129 -10.03494 -9.78898 -9.65081 -8.99166 -8.48224 -6.16658 -0.12794 0.12096 0.47956 0.74400 1.33133 1.41743 1.51986 1.62543 1.72618 2.16684 2.77621 2.80310 2.97912 3.08600 3.20172 3.41633 3.63123 3.76376 4.00781 4.09170 4.11624 4.26395 4.30545 4.41152 4.43318 4.56143 4.61077 4.62809 4.66424 4.72723 4.79205 4.81879 4.89197 5.05093 5.11957 5.12624 5.23755 5.29185 5.60035 5.63517 5.71154 5.73512 5.84225 6.01921 6.22200 6.41810 6.96477 7.04283 7.31049 7.78086 8.75620 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.002383 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.056395 B =11747.272572 C =12268.522522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.182 3.818 3 C -0.257 4.257 4 C 0.386 3.614 5 N -0.642 5.642 6 C 0.502 3.498 7 O -0.506 6.506 8 C -0.084 4.084 9 C -0.029 4.029 10 C -0.178 4.178 11 C -0.075 4.075 12 C -0.245 4.245 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.265 1.265 23 C -0.190 4.190 24 N -0.560 5.560 25 C 0.328 3.672 26 C -0.082 4.082 27 N -0.559 5.559 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.191 0.809 32 H 0.443 0.557 33 H 0.153 0.847 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.272 0.728 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.929 1.481 12.087 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.038 3.962 3 C -0.282 4.282 4 C 0.147 3.853 5 N -0.292 5.292 6 C 0.289 3.711 7 O -0.375 6.375 8 C -0.123 4.123 9 C -0.030 4.030 10 C -0.196 4.196 11 C -0.093 4.093 12 C -0.264 4.264 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.489 4.489 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.839 3.161 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.190 1.190 23 C -0.209 4.209 24 N -0.283 5.283 25 C 0.060 3.940 26 C -0.140 4.140 27 N -0.279 5.279 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.209 0.791 32 H 0.285 0.715 33 H 0.171 0.829 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.950 -0.024 11.664 26.639 hybrid contribution 0.775 0.819 -0.572 1.264 sum -23.175 0.795 11.093 25.705 Atomic orbital electron populations 1.20882 0.84566 1.05335 1.04784 1.22262 0.99348 0.87099 0.87538 1.22432 0.91611 1.02975 1.11225 1.19151 0.89411 0.86823 0.89945 1.43560 1.06676 1.07731 1.71205 1.21493 0.81913 0.92239 0.75428 1.90880 1.70137 1.32355 1.44167 1.20723 0.88719 0.94231 1.08619 1.19155 0.94454 0.97410 0.91963 1.20975 0.95055 1.06424 0.97179 1.21129 0.94280 0.96406 0.97455 1.21297 1.01330 1.11078 0.92717 1.19889 0.92425 0.94374 0.87242 1.83938 1.20501 1.81071 1.28656 1.21860 0.79894 1.51169 0.95973 0.88253 1.26622 1.05773 0.96145 0.93688 1.70197 1.37996 1.48698 0.99200 0.84510 0.73501 0.78524 0.79518 1.17521 1.19429 1.19009 1.20231 0.91467 1.10127 0.99109 1.68262 1.41981 0.98497 1.19570 1.23513 0.86892 0.94575 0.88973 1.20586 0.99726 0.89419 1.04263 1.68193 1.09052 1.31596 1.19075 0.88445 0.90086 0.87276 0.79133 0.71540 0.82936 0.85110 0.83494 0.83801 0.86552 0.91855 0.87495 0.89250 0.90692 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.22 71.24 0.73 -0.08 16 2 C 0.18 3.21 6.82 42.46 0.29 3.50 16 3 C -0.26 -4.03 9.72 22.57 0.22 -3.81 16 4 C 0.39 9.23 7.45 132.98 0.99 10.22 16 5 N -0.64 -12.02 5.38 -308.00 -1.66 -13.68 16 6 C 0.50 13.56 7.78 87.66 0.68 14.24 16 7 O -0.51 -20.15 14.35 -2.99 -0.04 -20.20 16 8 C -0.08 -1.78 5.83 29.10 0.17 -1.61 16 9 C -0.03 -1.00 4.37 -19.88 -0.09 -1.08 16 10 C -0.18 -5.79 9.70 22.30 0.22 -5.57 16 11 C -0.07 -2.74 10.04 22.25 0.22 -2.52 16 12 C -0.24 -11.41 9.17 22.39 0.21 -11.20 16 13 C 0.11 5.86 6.65 22.58 0.15 6.01 16 14 O -0.23 -14.85 9.76 -22.79 -0.22 -15.08 16 15 C -0.41 -25.12 9.49 67.92 0.64 -24.48 16 16 H 0.10 5.59 5.21 -2.91 -0.02 5.58 16 17 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 18 N -0.92 -58.43 13.67 21.61 0.30 -58.13 16 19 Si 1.02 44.43 29.55 68.60 2.03 46.46 16 20 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 23 C -0.19 -8.53 9.65 22.39 0.22 -8.32 16 24 N -0.56 -17.91 7.95 -185.19 -1.47 -19.38 16 25 C 0.33 9.31 7.64 138.76 1.06 10.37 16 26 C -0.08 -1.93 10.32 71.24 0.73 -1.20 16 27 N -0.56 -13.63 10.27 -176.23 -1.81 -15.44 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 0.27 8.09 -2.38 -0.02 0.25 16 31 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.44 3.32 8.72 -92.71 -0.81 2.51 16 33 H 0.15 1.79 8.09 -2.39 -0.02 1.77 16 34 H 0.13 2.15 8.08 -2.39 -0.02 2.13 16 35 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 38 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.11 4.79 8.06 -2.92 -0.02 4.76 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -93.32 367.66 4.29 -89.03 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.26 Total: 22.98 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 6.91 Total: -16.57 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -4.64 Total: -106.64 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.27 Total: -35.27 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -93.32 4.29 -89.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876184586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.210 kcal (2) G-P(sol) polarization free energy of solvation -93.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds