Wall clock time and date at job start Tue Mar 31 2020 14:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38221 * 120.40546 * 2 1 4 4 C 1.39498 * 118.33687 * 179.97438 * 3 2 1 5 5 N 1.39040 * 120.52373 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00114 * 174.88714 * 5 4 3 7 7 O 1.21266 * 119.99893 * 4.81769 * 6 5 4 8 8 C 1.50700 * 120.00204 * 184.81893 * 6 5 4 9 9 C 1.50700 * 109.47392 * 179.97438 * 8 6 5 10 10 C 1.38301 * 119.92937 * 269.72602 * 9 8 6 11 11 C 1.38096 * 120.06808 * 179.72352 * 10 9 8 12 12 C 1.38880 * 119.93029 * 0.56527 * 11 10 9 13 13 O 1.35752 * 120.06806 * 179.67753 * 12 11 10 14 14 C 1.34831 * 116.99625 * 185.55783 * 13 12 11 15 15 H 1.07992 * 120.00413 * 354.95419 * 14 13 12 16 16 C 1.38654 * 119.99776 * 174.94792 * 14 13 12 17 17 N 1.31561 * 120.00160 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00324 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47071 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47085 * 119.99677 * 18 16 14 21 21 H 1.48501 * 109.47603 * 240.00102 * 18 16 14 22 22 C 1.38878 * 119.85869 * 359.71181 * 12 11 10 23 23 C 1.38090 * 119.93273 * 359.97438 * 22 12 11 24 24 N 1.32925 * 118.95217 * 0.24759 * 4 3 2 25 25 C 1.31746 * 120.70385 * 359.49208 * 24 4 3 26 26 C 1.50696 * 119.08154 * 180.26110 * 25 24 4 27 27 N 1.31800 * 121.82859 * 0.52357 * 25 24 4 28 28 H 1.09004 * 109.46906 * 90.00324 * 1 2 3 29 29 H 1.09004 * 109.47082 * 210.00201 * 1 2 3 30 30 H 1.08999 * 109.47661 * 330.00100 * 1 2 3 31 31 H 1.07994 * 120.83296 * 359.95750 * 3 2 1 32 32 H 0.97001 * 120.00189 * 354.60723 * 5 4 3 33 33 H 1.08999 * 109.47120 * 299.99811 * 8 6 5 34 34 H 1.08997 * 109.47343 * 59.99772 * 8 6 5 35 35 H 1.08007 * 119.96547 * 359.97438 * 10 9 8 36 36 H 1.08004 * 120.03456 * 180.27486 * 11 10 9 37 37 H 0.96994 * 120.00311 * 180.02562 * 17 16 14 38 38 H 1.08006 * 120.03187 * 179.97438 * 22 12 11 39 39 H 1.07999 * 119.96352 * 180.02562 * 23 22 12 40 40 H 1.09003 * 109.47499 * 270.25443 * 26 25 24 41 41 H 1.09001 * 109.47609 * 30.25761 * 26 25 24 42 42 H 1.09000 * 109.46860 * 150.25649 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1921 0.0000 4 6 3.6006 1.1418 0.0005 5 7 4.3496 2.3132 0.0000 6 6 5.6920 2.2548 0.1046 7 8 6.2534 1.1800 0.1111 8 6 6.4952 3.5252 0.2134 9 6 7.9598 3.1861 0.3184 10 6 8.5364 2.9944 1.5607 11 6 9.8770 2.6779 1.6600 12 6 10.6489 2.5638 0.5111 13 8 11.9685 2.2593 0.6058 14 6 12.6842 2.2771 -0.5368 15 1 12.1891 2.4456 -1.4816 16 6 14.0560 2.0792 -0.4986 17 7 14.6592 1.8736 0.6524 18 14 15.0478 2.1045 -2.0813 19 1 14.1404 2.3536 -3.2302 20 1 16.0645 3.1847 -2.0111 21 1 15.7270 0.7962 -2.2610 22 6 10.0682 2.7626 -0.7347 23 6 8.7257 3.0725 -0.8275 24 7 4.2017 -0.0438 -0.0040 25 6 3.4955 -1.1561 0.0011 26 6 4.2148 -2.4803 0.0017 27 7 2.1776 -1.1427 0.0006 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6869 2.1388 -0.0007 32 1 3.9062 3.1723 -0.0797 33 1 6.3265 4.1388 -0.6716 34 1 6.1857 4.0759 1.1017 35 1 7.9367 3.0883 2.4541 36 1 10.3257 2.5240 2.6302 37 1 15.6189 1.7355 0.6791 38 1 10.6660 2.6750 -1.6299 39 1 8.2735 3.2268 -1.7961 40 1 4.3886 -2.7999 -1.0258 41 1 5.1700 -2.3748 0.5159 42 1 3.6058 -3.2242 0.5155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876185250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:47 Heat of formation + Delta-G solvation = 18.537362 kcal Electronic energy + Delta-G solvation = -25965.731333 eV Core-core repulsion = 22105.160448 eV Total energy + Delta-G solvation = -3860.570885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48299 -39.79507 -38.80757 -36.62550 -35.51416 -34.57093 -32.60938 -32.19693 -31.10223 -30.14087 -29.38698 -28.34943 -26.80508 -25.19660 -23.34223 -22.61225 -21.96484 -21.12102 -20.24681 -17.98950 -17.93930 -17.74670 -16.90864 -16.28910 -15.92863 -15.71586 -15.15434 -14.82518 -14.51083 -14.40144 -14.21179 -13.91938 -13.66449 -13.48130 -13.46332 -13.16011 -12.88171 -12.77223 -12.68920 -12.43737 -12.38096 -11.90950 -11.56841 -11.27291 -11.26592 -10.96459 -10.86243 -10.77326 -10.59788 -10.40647 -10.14033 -9.94197 -9.30905 -9.05052 -8.94596 -8.80775 -8.13959 -7.16213 -6.43222 -4.01644 0.72022 0.95675 2.17824 2.26780 2.66809 2.68010 3.13972 3.15121 3.20859 3.64105 3.76076 3.90653 3.98436 4.36999 4.55301 4.73615 4.82156 4.90861 5.10801 5.12697 5.14794 5.19517 5.22136 5.28112 5.32144 5.46488 5.49976 5.57946 5.63466 5.72711 5.76708 5.84984 6.00475 6.23033 6.42365 6.42853 6.63451 6.72775 6.92635 7.06956 7.22513 7.26145 7.37300 7.46527 7.84689 8.00999 8.02200 8.20198 9.02518 9.72970 10.74903 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.002237 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.380856 B =12514.286553 C =13068.077650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.196 3.804 3 C -0.279 4.279 4 C 0.414 3.586 5 N -0.663 5.663 6 C 0.494 3.506 7 O -0.442 6.442 8 C -0.075 4.075 9 C -0.176 4.176 10 C -0.057 4.057 11 C -0.191 4.191 12 C 0.158 3.842 13 O -0.177 6.177 14 C -0.390 4.390 15 H 0.093 0.907 16 C 0.038 3.962 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.232 4.232 23 C -0.054 4.054 24 N -0.515 5.515 25 C 0.352 3.648 26 C -0.085 4.085 27 N -0.548 5.548 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.418 0.582 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.269 0.731 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.040 1.789 -1.988 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.051 3.949 3 C -0.306 4.306 4 C 0.174 3.826 5 N -0.311 5.311 6 C 0.280 3.720 7 O -0.306 6.306 8 C -0.115 4.115 9 C -0.177 4.177 10 C -0.076 4.076 11 C -0.211 4.211 12 C 0.105 3.895 13 O -0.080 6.080 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.252 4.252 23 C -0.072 4.072 24 N -0.236 5.236 25 C 0.084 3.916 26 C -0.143 4.143 27 N -0.268 5.268 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.255 0.745 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.602 0.112 -1.691 25.658 hybrid contribution -0.210 1.405 -0.924 1.695 sum -25.813 1.517 -2.615 25.989 Atomic orbital electron populations 1.20752 0.87812 1.03953 1.03582 1.21435 0.97326 0.87523 0.88619 1.22016 0.93206 1.01157 1.14179 1.18767 0.87892 0.87195 0.88753 1.43958 1.08015 1.06852 1.72306 1.21549 0.80712 0.93152 0.76622 1.90865 1.68704 1.30228 1.40837 1.20415 0.93208 0.93764 1.04098 1.18569 0.92395 1.12901 0.93865 1.20391 0.93770 0.97549 0.95868 1.20152 0.93701 1.10341 0.96874 1.19394 0.85660 0.91355 0.93132 1.83978 1.14658 1.74735 1.34677 1.21381 0.89486 1.51036 0.84759 0.89000 1.25299 0.95839 0.96589 0.98876 1.70050 1.10407 1.44719 1.24558 0.85641 0.79481 0.78261 0.80000 1.19108 1.20159 1.20135 1.21101 0.95528 1.10623 0.97914 1.20497 0.93358 0.96940 0.96448 1.68352 1.40141 0.96931 1.18221 1.23234 0.86090 0.94316 0.87912 1.20585 1.00305 0.89442 1.04016 1.68131 1.09682 1.30051 1.18913 0.89749 0.89898 0.90236 0.83761 0.74534 0.88650 0.88569 0.87389 0.86503 0.92082 0.85543 0.87821 0.89528 0.89143 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.21 36.00 0.37 -0.21 16 2 C 0.20 1.91 6.82 -82.31 -0.56 1.35 16 3 C -0.28 -2.56 9.72 -39.12 -0.38 -2.94 16 4 C 0.41 5.12 7.45 -154.40 -1.15 3.97 16 5 N -0.66 -6.80 5.38 -11.28 -0.06 -6.86 16 6 C 0.49 6.83 7.78 -10.99 -0.09 6.75 16 7 O -0.44 -8.47 14.34 5.57 0.08 -8.39 16 8 C -0.07 -0.88 5.83 -29.03 -0.17 -1.05 16 9 C -0.18 -3.01 4.38 -104.58 -0.46 -3.47 16 10 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 11 C -0.19 -4.19 9.99 -39.40 -0.39 -4.59 16 12 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 13 O -0.18 -5.18 9.76 0.04 0.00 -5.18 16 14 C -0.39 -11.11 9.49 30.89 0.29 -10.82 16 15 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 18 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 C -0.23 -5.22 9.17 -39.40 -0.36 -5.58 16 23 C -0.05 -1.02 9.69 -39.61 -0.38 -1.40 16 24 N -0.51 -7.91 7.95 -9.89 -0.08 -7.99 16 25 C 0.35 4.78 7.64 -157.23 -1.20 3.58 16 26 C -0.09 -0.93 10.32 36.00 0.37 -0.56 16 27 N -0.55 -6.73 10.27 -7.06 -0.07 -6.80 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.42 2.28 8.72 -40.82 -0.36 1.93 16 33 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -37.42 367.65 -8.83 -46.26 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.13 Total: 4.23 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -4.85 Total: -11.76 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.55 Total: -46.53 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.42 -8.83 -46.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876185250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.794 kcal (2) G-P(sol) polarization free energy of solvation -37.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds