Wall clock time and date at job start Tue Mar 31 2020 14:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38221 * 120.40546 * 2 1 4 4 C 1.39498 * 118.33687 * 179.97438 * 3 2 1 5 5 N 1.39040 * 120.52373 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00114 * 174.88714 * 5 4 3 7 7 O 1.21266 * 119.99893 * 4.81769 * 6 5 4 8 8 C 1.50700 * 120.00204 * 184.81893 * 6 5 4 9 9 C 1.50700 * 109.47392 * 179.97438 * 8 6 5 10 10 C 1.38301 * 119.92937 * 269.72602 * 9 8 6 11 11 C 1.38096 * 120.06808 * 179.72352 * 10 9 8 12 12 C 1.38880 * 119.93029 * 0.56527 * 11 10 9 13 13 O 1.35752 * 120.06806 * 179.67753 * 12 11 10 14 14 C 1.34831 * 116.99625 * 185.55783 * 13 12 11 15 15 H 1.07992 * 120.00413 * 354.95419 * 14 13 12 16 16 C 1.38654 * 119.99776 * 174.94792 * 14 13 12 17 17 N 1.31561 * 120.00160 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00324 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47071 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47085 * 119.99677 * 18 16 14 21 21 H 1.48501 * 109.47603 * 240.00102 * 18 16 14 22 22 C 1.38878 * 119.85869 * 359.71181 * 12 11 10 23 23 C 1.38090 * 119.93273 * 359.97438 * 22 12 11 24 24 N 1.32925 * 118.95217 * 0.24759 * 4 3 2 25 25 C 1.31746 * 120.70385 * 359.49208 * 24 4 3 26 26 C 1.50696 * 119.08154 * 180.26110 * 25 24 4 27 27 N 1.31800 * 121.82859 * 0.52357 * 25 24 4 28 28 H 1.09004 * 109.46906 * 90.00324 * 1 2 3 29 29 H 1.09004 * 109.47082 * 210.00201 * 1 2 3 30 30 H 1.08999 * 109.47661 * 330.00100 * 1 2 3 31 31 H 1.07994 * 120.83296 * 359.95750 * 3 2 1 32 32 H 0.97001 * 120.00189 * 354.60723 * 5 4 3 33 33 H 1.08999 * 109.47120 * 299.99811 * 8 6 5 34 34 H 1.08997 * 109.47343 * 59.99772 * 8 6 5 35 35 H 1.08007 * 119.96547 * 359.97438 * 10 9 8 36 36 H 1.08004 * 120.03456 * 180.27486 * 11 10 9 37 37 H 0.96994 * 120.00311 * 180.02562 * 17 16 14 38 38 H 1.08006 * 120.03187 * 179.97438 * 22 12 11 39 39 H 1.07999 * 119.96352 * 180.02562 * 23 22 12 40 40 H 1.09003 * 109.47499 * 270.25443 * 26 25 24 41 41 H 1.09001 * 109.47609 * 30.25761 * 26 25 24 42 42 H 1.09000 * 109.46860 * 150.25649 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1921 0.0000 4 6 3.6006 1.1418 0.0005 5 7 4.3496 2.3132 0.0000 6 6 5.6920 2.2548 0.1046 7 8 6.2534 1.1800 0.1111 8 6 6.4952 3.5252 0.2134 9 6 7.9598 3.1861 0.3184 10 6 8.5364 2.9944 1.5607 11 6 9.8770 2.6779 1.6600 12 6 10.6489 2.5638 0.5111 13 8 11.9685 2.2593 0.6058 14 6 12.6842 2.2771 -0.5368 15 1 12.1891 2.4456 -1.4816 16 6 14.0560 2.0792 -0.4986 17 7 14.6592 1.8736 0.6524 18 14 15.0478 2.1045 -2.0813 19 1 14.1404 2.3536 -3.2302 20 1 16.0645 3.1847 -2.0111 21 1 15.7270 0.7962 -2.2610 22 6 10.0682 2.7626 -0.7347 23 6 8.7257 3.0725 -0.8275 24 7 4.2017 -0.0438 -0.0040 25 6 3.4955 -1.1561 0.0011 26 6 4.2148 -2.4803 0.0017 27 7 2.1776 -1.1427 0.0006 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6869 2.1388 -0.0007 32 1 3.9062 3.1723 -0.0797 33 1 6.3265 4.1388 -0.6716 34 1 6.1857 4.0759 1.1017 35 1 7.9367 3.0883 2.4541 36 1 10.3257 2.5240 2.6302 37 1 15.6189 1.7355 0.6791 38 1 10.6660 2.6750 -1.6299 39 1 8.2735 3.2268 -1.7961 40 1 4.3886 -2.7999 -1.0258 41 1 5.1700 -2.3748 0.5159 42 1 3.6058 -3.2242 0.5155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876185250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:47 Heat of formation + Delta-G solvation = -7.034971 kcal Electronic energy + Delta-G solvation = -25966.840232 eV Core-core repulsion = 22105.160448 eV Total energy + Delta-G solvation = -3861.679785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.34305 -41.03906 -40.37213 -38.28996 -36.54493 -35.33380 -34.41513 -33.42600 -32.39839 -31.78565 -30.07131 -29.17388 -28.24329 -27.07700 -24.32494 -23.65094 -23.44608 -22.39280 -21.45802 -19.86141 -19.00570 -18.74496 -18.58860 -17.21080 -16.91086 -16.46569 -16.43722 -16.35556 -16.02594 -15.76780 -15.54832 -15.32866 -15.04573 -14.82746 -14.43187 -14.22517 -14.18094 -13.88991 -13.67204 -13.50566 -13.33674 -13.05867 -12.99696 -12.80447 -12.49697 -12.31386 -12.29558 -12.16235 -12.10451 -11.76180 -11.22704 -11.18882 -10.80826 -10.79069 -9.98868 -9.77693 -9.75929 -8.92115 -8.48469 -6.16671 -0.11056 0.13790 0.60723 0.63567 1.33190 1.41505 1.52031 1.68427 1.77331 2.16620 2.79067 2.80361 2.99204 3.09923 3.21190 3.50632 3.66979 3.80322 4.04193 4.05043 4.13169 4.18157 4.30418 4.44748 4.47044 4.58142 4.63273 4.66950 4.68476 4.79330 4.79851 4.83278 4.90037 5.07675 5.13569 5.13775 5.25396 5.29221 5.55077 5.62190 5.70852 5.75480 5.87367 6.02049 6.22313 6.46168 6.96042 7.09269 7.34399 7.77388 8.75203 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.002237 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.380856 B =12514.286553 C =13068.077650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.181 3.819 3 C -0.258 4.258 4 C 0.387 3.613 5 N -0.642 5.642 6 C 0.498 3.502 7 O -0.508 6.508 8 C -0.070 4.070 9 C -0.149 4.149 10 C -0.055 4.055 11 C -0.208 4.208 12 C 0.113 3.887 13 O -0.234 6.234 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.921 5.921 18 Si 1.021 2.979 19 H -0.252 1.252 20 H -0.265 1.265 21 H -0.269 1.269 22 C -0.245 4.245 23 C -0.058 4.058 24 N -0.559 5.559 25 C 0.328 3.672 26 C -0.082 4.082 27 N -0.561 5.561 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.191 0.809 32 H 0.442 0.558 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.273 0.727 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.713 4.113 -3.324 32.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.037 3.963 3 C -0.283 4.283 4 C 0.147 3.853 5 N -0.292 5.292 6 C 0.286 3.714 7 O -0.378 6.378 8 C -0.109 4.109 9 C -0.150 4.150 10 C -0.073 4.073 11 C -0.227 4.227 12 C 0.063 3.937 13 O -0.141 6.141 14 C -0.489 4.489 15 H 0.118 0.882 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.840 3.160 19 H -0.175 1.175 20 H -0.190 1.190 21 H -0.194 1.194 22 C -0.264 4.264 23 C -0.076 4.076 24 N -0.282 5.282 25 C 0.060 3.940 26 C -0.140 4.140 27 N -0.281 5.281 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.208 0.792 32 H 0.284 0.716 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -30.399 2.496 -3.030 30.652 hybrid contribution 0.746 0.753 -0.434 1.145 sum -29.653 3.248 -3.464 30.031 Atomic orbital electron populations 1.20879 0.84680 1.05248 1.04800 1.22247 0.99305 0.87155 0.87607 1.22431 0.91733 1.02883 1.11274 1.19169 0.89393 0.86926 0.89811 1.43626 1.06867 1.07566 1.71171 1.21777 0.81763 0.92646 0.75255 1.90879 1.70189 1.32485 1.44198 1.20553 0.88520 0.93542 1.08314 1.19216 0.95441 1.07898 0.92462 1.20878 0.92358 0.95823 0.98279 1.20441 0.95381 1.10928 0.95960 1.19955 0.84939 0.93531 0.95263 1.83939 1.16741 1.78017 1.35363 1.21858 0.90305 1.51521 0.85236 0.88238 1.26632 0.96692 0.95885 1.03039 1.70195 1.10886 1.47470 1.27408 0.84507 0.77649 0.78654 0.75218 1.17542 1.19019 1.19394 1.21224 0.97358 1.11235 0.96614 1.20936 0.91872 0.95769 0.98978 1.68277 1.41883 0.98461 1.19590 1.23489 0.86868 0.94597 0.89008 1.20580 0.99644 0.89465 1.04329 1.68186 1.09105 1.31648 1.19142 0.88351 0.90233 0.87347 0.79175 0.71575 0.84394 0.84261 0.83565 0.87106 0.91822 0.86583 0.84319 0.89003 0.90843 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.21 71.23 0.73 0.01 16 2 C 0.18 2.99 6.82 42.45 0.29 3.28 16 3 C -0.26 -3.66 9.72 22.57 0.22 -3.44 16 4 C 0.39 8.51 7.45 132.98 0.99 9.50 16 5 N -0.64 -10.44 5.38 -308.01 -1.66 -12.10 16 6 C 0.50 11.97 7.78 87.66 0.68 12.65 16 7 O -0.51 -18.87 14.34 -2.99 -0.04 -18.91 16 8 C -0.07 -1.25 5.83 29.10 0.17 -1.08 16 9 C -0.15 -4.63 4.38 -19.84 -0.09 -4.71 16 10 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16 11 C -0.21 -9.42 9.99 22.39 0.22 -9.20 16 12 C 0.11 5.98 6.65 22.58 0.15 6.13 16 13 O -0.23 -14.76 9.76 -22.78 -0.22 -14.98 16 14 C -0.41 -25.06 9.49 67.92 0.64 -24.41 16 15 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 16 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 17 N -0.92 -58.21 13.67 21.61 0.30 -57.91 16 18 Si 1.02 44.30 29.55 68.60 2.03 46.32 16 19 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 22 C -0.25 -11.32 9.17 22.39 0.21 -11.12 16 23 C -0.06 -2.06 9.69 22.25 0.22 -1.85 16 24 N -0.56 -16.91 7.95 -185.20 -1.47 -18.39 16 25 C 0.33 8.90 7.64 138.76 1.06 9.96 16 26 C -0.08 -1.86 10.32 71.23 0.73 -1.12 16 27 N -0.56 -13.09 10.27 -176.24 -1.81 -14.90 16 28 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.18 8.09 -2.39 -0.02 0.16 16 31 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16 32 H 0.44 2.23 8.72 -92.71 -0.81 1.42 16 33 H 0.14 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.14 1.45 8.08 -2.39 -0.02 1.44 16 35 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 39 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -92.79 367.65 4.29 -88.51 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.26 Total: 20.52 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 6.91 Total: -18.15 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.64 Total: -103.30 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.27 Total: -33.89 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -92.79 4.29 -88.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876185250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.471 kcal (2) G-P(sol) polarization free energy of solvation -92.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds