Wall clock time and date at job start Tue Mar 31 2020 16:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47016 * 2 1 4 4 N 1.30839 * 125.89659 * 276.26067 * 3 2 1 5 5 N 1.40089 * 108.20206 * 180.15263 * 4 3 2 6 6 C 1.46502 * 126.03514 * 179.85782 * 5 4 3 7 7 C 1.34947 * 107.92699 * 359.58658 * 5 4 3 8 8 C 1.35324 * 107.74276 * 0.24636 * 7 5 4 9 9 S 1.76195 * 126.03627 * 179.97438 * 8 7 5 10 10 O 1.42101 * 106.40592 * 359.46229 * 9 8 7 11 11 O 1.42106 * 106.40156 * 132.38160 * 9 8 7 12 12 N 1.65602 * 107.21921 * 245.91932 * 9 8 7 13 13 C 1.36940 * 119.99758 * 90.02616 * 12 9 8 14 14 H 1.07995 * 119.99786 * 151.60154 * 13 12 9 15 15 C 1.38811 * 120.00061 * 331.59374 * 13 12 9 16 16 N 1.31619 * 119.99801 * 326.24737 * 15 13 12 17 17 Si 1.86790 * 119.99933 * 146.24417 * 15 13 12 18 18 H 1.48508 * 109.47313 * 90.00136 * 17 15 13 19 19 H 1.48498 * 109.47321 * 210.00166 * 17 15 13 20 20 H 1.48505 * 109.47266 * 330.00107 * 17 15 13 21 21 C 1.46496 * 120.00224 * 270.02479 * 12 9 8 22 22 C 1.54263 * 110.03257 * 235.27070 * 21 12 9 23 23 C 1.54970 * 104.15646 * 217.13575 * 22 21 12 24 24 C 1.54889 * 102.78001 * 37.88561 * 23 22 21 25 25 C 1.53869 * 110.03323 * 118.04763 * 21 12 9 26 26 H 1.08999 * 109.47308 * 185.13771 * 1 2 3 27 27 H 1.09001 * 109.47026 * 305.14477 * 1 2 3 28 28 H 1.08999 * 109.47117 * 65.13796 * 1 2 3 29 29 H 1.09003 * 109.47040 * 240.00205 * 2 1 3 30 30 H 1.09000 * 109.47241 * 119.99973 * 2 1 3 31 31 H 1.08998 * 109.46942 * 269.68277 * 6 5 4 32 32 H 1.09001 * 109.47250 * 29.68601 * 6 5 4 33 33 H 1.09006 * 109.46967 * 149.68561 * 6 5 4 34 34 H 1.07997 * 126.12584 * 180.22183 * 7 5 4 35 35 H 0.97005 * 119.99870 * 185.19625 * 16 15 13 36 36 H 1.09004 * 110.01467 * 356.65469 * 21 12 9 37 37 H 1.08993 * 110.48724 * 335.77718 * 22 21 12 38 38 H 1.09004 * 110.49106 * 98.42714 * 22 21 12 39 39 H 1.09004 * 110.72058 * 279.56587 * 23 22 21 40 40 H 1.09005 * 110.92436 * 156.29750 * 23 22 21 41 41 H 1.08998 * 110.48705 * 203.40990 * 24 23 22 42 42 H 1.08993 * 110.59654 * 80.81903 * 24 23 22 43 43 H 1.09006 * 110.03382 * 238.57196 * 25 21 12 44 44 H 1.09000 * 110.03504 * 359.95534 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1791 2.1826 -1.0536 5 7 2.6710 3.4243 -0.6307 6 6 2.9795 4.5680 -1.4927 7 6 2.8049 3.3828 0.7115 8 6 2.4167 2.1548 1.1268 9 16 2.3991 1.5817 2.7929 10 8 2.8808 2.6539 3.5913 11 8 1.1316 0.9714 2.9939 12 7 3.5239 0.3717 2.9069 13 6 4.8189 0.6697 3.2380 14 1 5.4272 -0.0612 3.7500 15 6 5.3496 1.9111 2.9154 16 7 4.9707 2.5225 1.8132 17 14 6.6015 2.7138 4.0457 18 1 7.9696 2.3008 3.6419 19 1 6.4813 4.1907 3.9480 20 1 6.3489 2.2882 5.4459 21 6 3.1338 -1.0175 2.6537 22 6 3.5041 -1.8994 3.8640 23 6 3.9644 -3.2371 3.2315 24 6 4.7315 -2.7729 1.9685 25 6 3.9134 -1.5727 1.4489 26 1 -0.3634 -1.0235 0.0920 27 1 -0.3633 0.5916 0.8403 28 1 -0.3633 0.4321 -0.9324 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0197 4.5113 -1.8131 32 1 2.3285 4.5502 -2.3668 33 1 2.8197 5.4935 -0.9394 34 1 3.1589 4.1856 1.3411 35 1 5.3959 3.3534 1.5488 36 1 2.0620 -1.0753 2.4637 37 1 4.3169 -1.4465 4.4316 38 1 2.6341 -2.0573 4.5015 39 1 3.1055 -3.8503 2.9583 40 1 4.6253 -3.7801 3.9071 41 1 4.7568 -3.5684 1.2237 42 1 5.7434 -2.4615 2.2273 43 1 3.2199 -1.9007 0.6745 44 1 4.5815 -0.8083 1.0521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881910861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:12 Heat of formation + Delta-G solvation = 11.453428 kcal Electronic energy + Delta-G solvation = -28811.420309 eV Core-core repulsion = 25085.986193 eV Total energy + Delta-G solvation = -3725.434116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.41931 -37.95688 -35.97896 -34.42190 -34.19888 -33.85492 -31.42338 -31.05992 -29.39671 -27.97951 -26.82639 -26.24636 -24.08303 -23.05205 -21.09142 -20.09614 -19.45212 -19.06762 -18.73160 -17.33703 -16.31837 -15.84630 -15.15525 -14.99268 -14.78782 -14.50611 -14.22536 -14.01825 -13.82214 -13.55766 -12.86732 -12.82696 -12.63660 -12.51034 -12.23442 -11.93562 -11.72287 -11.54562 -11.27231 -11.07224 -10.99413 -10.82119 -10.78735 -10.61344 -10.50009 -10.46789 -10.41348 -10.32147 -10.25520 -10.10178 -9.74386 -9.54546 -9.50547 -8.89250 -8.50353 -8.21743 -7.63083 -6.21158 -3.70546 1.99932 2.61368 3.11708 3.23032 3.31937 3.42309 3.49044 4.29414 4.68956 4.89075 4.98461 5.22838 5.29553 5.32348 5.34184 5.40608 5.47480 5.51324 5.59805 5.65398 5.82291 5.86955 5.98175 6.10498 6.15939 6.18229 6.22264 6.28201 6.32109 6.36707 6.49496 6.51633 6.59851 6.68513 6.72702 6.75747 6.86459 6.97577 7.12885 7.28651 7.55560 7.65793 7.73653 8.31224 8.48569 9.15563 9.54098 10.76746 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.008497 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.674186 B = 3294.674872 C = 4718.964530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C 0.157 3.843 4 N -0.320 5.320 5 N -0.384 5.384 6 C 0.105 3.895 7 C 0.230 3.770 8 C -0.751 4.751 9 S 2.732 3.268 10 O -0.969 6.969 11 O -1.008 7.008 12 N -0.850 5.850 13 C -0.312 4.312 14 H 0.092 0.908 15 C 0.046 3.954 16 N -0.879 5.879 17 Si 0.921 3.079 18 H -0.290 1.290 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.139 3.861 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.135 4.135 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.175 0.825 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 -2.429 -4.152 5.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.012 4.012 4 N -0.141 5.141 5 N -0.163 5.163 6 C -0.037 4.037 7 C 0.080 3.920 8 C -0.849 4.849 9 S 2.822 3.178 10 O -0.960 6.960 11 O -0.998 6.998 12 N -0.681 5.681 13 C -0.441 4.441 14 H 0.110 0.890 15 C -0.159 4.159 16 N -0.518 5.518 17 Si 0.749 3.251 18 H -0.217 1.217 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.032 3.968 22 C -0.168 4.168 23 C -0.161 4.161 24 C -0.154 4.154 25 C -0.175 4.175 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.192 0.808 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.884 -1.641 -4.955 6.506 hybrid contribution 1.452 0.658 0.289 1.620 sum -2.432 -0.983 -4.666 5.353 Atomic orbital electron populations 1.21724 0.94249 1.02024 1.02355 1.20438 0.96524 0.89435 1.04018 1.21503 0.94718 0.95493 0.89496 1.77060 1.23135 0.91263 1.22598 1.48613 1.50962 1.11240 1.05532 1.21724 1.01914 0.85249 0.94818 1.21924 0.88794 0.97709 0.83594 1.31215 1.25660 1.03517 1.24464 1.00220 0.71344 0.72895 0.73338 1.93399 1.80734 1.54950 1.66878 1.93435 1.42127 1.77983 1.86291 1.53306 1.20460 1.13659 1.80638 1.18608 0.89539 1.00099 1.35818 0.89028 1.25092 0.97934 0.97881 0.94952 1.70313 1.43558 1.19073 1.18878 0.86036 0.78687 0.78669 0.81709 1.21666 1.21114 1.19626 1.21467 0.97415 0.84056 0.93902 1.22691 1.01553 0.94525 0.98064 1.22462 0.99207 0.97171 0.97228 1.22249 0.99506 0.97120 0.96560 1.22638 0.99300 0.98010 0.97533 0.92202 0.91163 0.93088 0.90571 0.88823 0.91118 0.90000 0.90016 0.80827 0.92519 0.90091 0.89738 0.92440 0.92287 0.92440 0.93065 0.91704 0.92989 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.89 37.16 0.37 -1.98 16 2 C -0.07 -1.19 5.59 -27.88 -0.16 -1.35 16 3 C 0.16 3.33 6.47 -82.41 -0.53 2.79 16 4 N -0.32 -6.64 12.58 33.67 0.42 -6.21 16 5 N -0.38 -7.27 4.01 -68.16 -0.27 -7.55 16 6 C 0.11 1.37 11.47 59.85 0.69 2.06 16 7 C 0.23 4.83 8.73 -17.22 -0.15 4.68 16 8 C -0.75 -16.99 4.88 -40.01 -0.20 -17.19 16 9 S 2.73 66.08 4.61 -107.50 -0.50 65.58 16 10 O -0.97 -25.88 15.20 -57.17 -0.87 -26.75 16 11 O -1.01 -24.30 15.91 -57.17 -0.91 -25.21 16 12 N -0.85 -19.72 2.80 -52.35 -0.15 -19.86 16 13 C -0.31 -7.70 7.85 -15.06 -0.12 -7.82 16 14 H 0.09 2.20 6.68 -52.49 -0.35 1.85 16 15 C 0.05 1.16 3.63 -17.43 -0.06 1.10 16 16 N -0.88 -22.08 8.21 55.49 0.46 -21.63 16 17 Si 0.92 21.26 29.67 -169.99 -5.04 16.22 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.14 2.75 2.31 -66.82 -0.15 2.60 16 22 C -0.13 -2.27 6.40 -25.03 -0.16 -2.43 16 23 C -0.12 -1.80 6.91 -24.69 -0.17 -1.97 16 24 C -0.12 -1.82 6.83 -25.07 -0.17 -2.00 16 25 C -0.14 -2.46 5.47 -25.61 -0.14 -2.60 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.25 7.84 -51.93 -0.41 0.85 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.09 1.74 2.29 -51.93 -0.12 1.62 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.17 3.47 7.87 -52.49 -0.41 3.06 16 35 H 0.26 6.42 8.28 -40.82 -0.34 6.08 16 36 H 0.08 1.57 5.27 -51.93 -0.27 1.30 16 37 H 0.08 1.60 6.21 -51.93 -0.32 1.28 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.84 6.89 -51.93 -0.36 0.49 16 44 H 0.09 1.89 7.44 -51.93 -0.39 1.50 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -30.47 349.07 -8.97 -39.44 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.41 Total: 4.82 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -0.96 Total: -24.10 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.46 Total: -55.26 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -1.78 Total: -51.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.04 Total: 16.22 kcal Atomic # 16 Polarization: 66.08 SS G_CDS: -0.50 Total: 65.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.47 -8.97 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881910861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.892 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds