Wall clock time and date at job start Tue Mar 31 2020 16:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47016 * 2 1 4 4 N 1.30839 * 125.89659 * 276.26067 * 3 2 1 5 5 N 1.40089 * 108.20206 * 180.15263 * 4 3 2 6 6 C 1.46502 * 126.03514 * 179.85782 * 5 4 3 7 7 C 1.34947 * 107.92699 * 359.58658 * 5 4 3 8 8 C 1.35324 * 107.74276 * 0.24636 * 7 5 4 9 9 S 1.76195 * 126.03627 * 179.97438 * 8 7 5 10 10 O 1.42101 * 106.40592 * 359.46229 * 9 8 7 11 11 O 1.42106 * 106.40156 * 132.38160 * 9 8 7 12 12 N 1.65602 * 107.21921 * 245.91932 * 9 8 7 13 13 C 1.36940 * 119.99758 * 90.02616 * 12 9 8 14 14 H 1.07995 * 119.99786 * 151.60154 * 13 12 9 15 15 C 1.38811 * 120.00061 * 331.59374 * 13 12 9 16 16 N 1.31619 * 119.99801 * 326.24737 * 15 13 12 17 17 Si 1.86790 * 119.99933 * 146.24417 * 15 13 12 18 18 H 1.48508 * 109.47313 * 90.00136 * 17 15 13 19 19 H 1.48498 * 109.47321 * 210.00166 * 17 15 13 20 20 H 1.48505 * 109.47266 * 330.00107 * 17 15 13 21 21 C 1.46496 * 120.00224 * 270.02479 * 12 9 8 22 22 C 1.54263 * 110.03257 * 235.27070 * 21 12 9 23 23 C 1.54970 * 104.15646 * 217.13575 * 22 21 12 24 24 C 1.54889 * 102.78001 * 37.88561 * 23 22 21 25 25 C 1.53869 * 110.03323 * 118.04763 * 21 12 9 26 26 H 1.08999 * 109.47308 * 185.13771 * 1 2 3 27 27 H 1.09001 * 109.47026 * 305.14477 * 1 2 3 28 28 H 1.08999 * 109.47117 * 65.13796 * 1 2 3 29 29 H 1.09003 * 109.47040 * 240.00205 * 2 1 3 30 30 H 1.09000 * 109.47241 * 119.99973 * 2 1 3 31 31 H 1.08998 * 109.46942 * 269.68277 * 6 5 4 32 32 H 1.09001 * 109.47250 * 29.68601 * 6 5 4 33 33 H 1.09006 * 109.46967 * 149.68561 * 6 5 4 34 34 H 1.07997 * 126.12584 * 180.22183 * 7 5 4 35 35 H 0.97005 * 119.99870 * 185.19625 * 16 15 13 36 36 H 1.09004 * 110.01467 * 356.65469 * 21 12 9 37 37 H 1.08993 * 110.48724 * 335.77718 * 22 21 12 38 38 H 1.09004 * 110.49106 * 98.42714 * 22 21 12 39 39 H 1.09004 * 110.72058 * 279.56587 * 23 22 21 40 40 H 1.09005 * 110.92436 * 156.29750 * 23 22 21 41 41 H 1.08998 * 110.48705 * 203.40990 * 24 23 22 42 42 H 1.08993 * 110.59654 * 80.81903 * 24 23 22 43 43 H 1.09006 * 110.03382 * 238.57196 * 25 21 12 44 44 H 1.09000 * 110.03504 * 359.95534 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1791 2.1826 -1.0536 5 7 2.6710 3.4243 -0.6307 6 6 2.9795 4.5680 -1.4927 7 6 2.8049 3.3828 0.7115 8 6 2.4167 2.1548 1.1268 9 16 2.3991 1.5817 2.7929 10 8 2.8808 2.6539 3.5913 11 8 1.1316 0.9714 2.9939 12 7 3.5239 0.3717 2.9069 13 6 4.8189 0.6697 3.2380 14 1 5.4272 -0.0612 3.7500 15 6 5.3496 1.9111 2.9154 16 7 4.9707 2.5225 1.8132 17 14 6.6015 2.7138 4.0457 18 1 7.9696 2.3008 3.6419 19 1 6.4813 4.1907 3.9480 20 1 6.3489 2.2882 5.4459 21 6 3.1338 -1.0175 2.6537 22 6 3.5041 -1.8994 3.8640 23 6 3.9644 -3.2371 3.2315 24 6 4.7315 -2.7729 1.9685 25 6 3.9134 -1.5727 1.4489 26 1 -0.3634 -1.0235 0.0920 27 1 -0.3633 0.5916 0.8403 28 1 -0.3633 0.4321 -0.9324 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.0197 4.5113 -1.8131 32 1 2.3285 4.5502 -2.3668 33 1 2.8197 5.4935 -0.9394 34 1 3.1589 4.1856 1.3411 35 1 5.3959 3.3534 1.5488 36 1 2.0620 -1.0753 2.4637 37 1 4.3169 -1.4465 4.4316 38 1 2.6341 -2.0573 4.5015 39 1 3.1055 -3.8503 2.9583 40 1 4.6253 -3.7801 3.9071 41 1 4.7568 -3.5684 1.2237 42 1 5.7434 -2.4615 2.2273 43 1 3.2199 -1.9007 0.6745 44 1 4.5815 -0.8083 1.0521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881910861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:11 Heat of formation + Delta-G solvation = -7.898947 kcal Electronic energy + Delta-G solvation = -28812.259491 eV Core-core repulsion = 25085.986193 eV Total energy + Delta-G solvation = -3726.273298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.97182 -39.44395 -37.87481 -36.35135 -35.66036 -35.50574 -33.06376 -32.51966 -31.00346 -29.34293 -28.38140 -27.55507 -25.85947 -24.43011 -22.67996 -21.42498 -21.03726 -20.58746 -20.50874 -18.99477 -18.08153 -17.50889 -16.89208 -16.45570 -16.34864 -15.95466 -15.93283 -15.55078 -15.41611 -15.02714 -14.43505 -14.18473 -14.01400 -13.75774 -13.68948 -13.55207 -13.41567 -13.02368 -12.86726 -12.79946 -12.71497 -12.48225 -12.39350 -12.38424 -12.16723 -12.09316 -11.89104 -11.73222 -11.66774 -11.62728 -11.23990 -11.15983 -11.08162 -10.67330 -10.07844 -9.81635 -9.41714 -8.09857 -5.60964 0.18953 1.02010 1.45405 1.54801 1.57931 1.62955 1.75070 2.43582 2.89034 3.09627 3.41316 3.64073 3.78828 3.96321 4.02606 4.09702 4.15823 4.21497 4.30061 4.40411 4.47501 4.58378 4.62475 4.74536 4.78527 4.82216 4.89235 4.92544 5.00033 5.03981 5.07493 5.17765 5.23728 5.26439 5.30790 5.40679 5.44345 5.61261 5.68139 5.72768 5.83774 5.98160 6.18636 6.57385 6.73388 7.29818 7.65303 8.86232 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.008497 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.674186 B = 3294.674872 C = 4718.964530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C 0.147 3.853 4 N -0.330 5.330 5 N -0.377 5.377 6 C 0.092 3.908 7 C 0.224 3.776 8 C -0.773 4.773 9 S 2.729 3.271 10 O -1.005 7.005 11 O -1.017 7.017 12 N -0.857 5.857 13 C -0.315 4.315 14 H 0.092 0.908 15 C 0.009 3.991 16 N -0.885 5.885 17 Si 0.954 3.046 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.130 3.870 22 C -0.133 4.133 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.129 4.129 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.178 0.822 35 H 0.264 0.736 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 -3.693 -5.330 7.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.021 4.021 4 N -0.152 5.152 5 N -0.156 5.156 6 C -0.047 4.047 7 C 0.071 3.929 8 C -0.873 4.873 9 S 2.822 3.178 10 O -0.995 6.995 11 O -1.008 7.008 12 N -0.688 5.688 13 C -0.445 4.445 14 H 0.109 0.891 15 C -0.194 4.194 16 N -0.525 5.525 17 Si 0.782 3.218 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.203 1.203 21 C 0.023 3.977 22 C -0.173 4.173 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.168 4.168 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.195 0.805 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.009 -2.915 -6.133 7.885 hybrid contribution 1.456 1.103 0.605 1.924 sum -2.553 -1.811 -5.528 6.353 Atomic orbital electron populations 1.21706 0.92753 1.03582 1.01830 1.20595 0.97842 0.88018 1.04498 1.21920 0.94597 0.96708 0.88913 1.76989 1.23497 0.92027 1.22653 1.48992 1.49424 1.11825 1.05378 1.22200 1.02936 0.84413 0.95200 1.21979 0.88724 0.97417 0.84741 1.30973 1.27696 1.04804 1.23797 1.00014 0.71300 0.72687 0.73795 1.93340 1.81269 1.56411 1.68457 1.93405 1.42583 1.78003 1.86777 1.53112 1.19430 1.14919 1.81347 1.18703 0.89740 1.00248 1.35769 0.89067 1.25596 0.99536 0.98489 0.95772 1.70367 1.43996 1.19056 1.19130 0.85510 0.78219 0.77687 0.80388 1.20490 1.21701 1.20284 1.21746 0.97774 0.82497 0.95676 1.22720 1.01311 0.95869 0.97387 1.22431 1.00160 0.95680 0.96559 1.22234 0.98380 0.96729 0.97746 1.22525 0.99083 0.97954 0.97247 0.89261 0.93442 0.92162 0.88894 0.89394 0.90171 0.88088 0.87132 0.80528 0.92618 0.89951 0.91675 0.91603 0.89979 0.90656 0.90350 0.93091 0.91033 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.89 71.98 0.71 -3.62 16 2 C -0.07 -2.50 5.59 29.85 0.17 -2.33 16 3 C 0.15 6.18 6.47 43.10 0.28 6.46 16 4 N -0.33 -13.38 12.58 -47.39 -0.60 -13.98 16 5 N -0.38 -13.90 4.01 -369.55 -1.48 -15.38 16 6 C 0.09 2.21 11.47 127.77 1.47 3.68 16 7 C 0.22 9.41 8.73 83.54 0.73 10.14 16 8 C -0.77 -35.26 4.88 21.99 0.11 -35.15 16 9 S 2.73 134.73 4.61 -56.49 -0.26 134.47 16 10 O -1.00 -55.22 15.20 -128.00 -1.95 -57.16 16 11 O -1.02 -49.92 15.91 -128.00 -2.04 -51.95 16 12 N -0.86 -40.30 2.80 -319.53 -0.89 -41.19 16 13 C -0.32 -15.83 7.85 84.03 0.66 -15.17 16 14 H 0.09 4.47 6.68 -2.91 -0.02 4.45 16 15 C 0.01 0.47 3.63 84.86 0.31 0.78 16 16 N -0.89 -45.06 8.21 21.65 0.18 -44.88 16 17 Si 0.95 43.77 29.67 68.60 2.04 45.80 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 C 0.13 5.07 2.31 45.71 0.11 5.18 16 22 C -0.13 -4.56 6.40 31.70 0.20 -4.36 16 23 C -0.11 -2.91 6.91 31.91 0.22 -2.69 16 24 C -0.11 -3.29 6.83 31.67 0.22 -3.07 16 25 C -0.13 -4.54 5.47 31.32 0.17 -4.37 16 26 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.05 1.66 7.84 -2.39 -0.02 1.65 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.09 3.19 2.29 -2.39 -0.01 3.19 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.18 7.17 7.87 -2.91 -0.02 7.15 16 35 H 0.26 12.94 8.28 -92.70 -0.77 12.17 16 36 H 0.08 3.16 5.27 -2.39 -0.01 3.15 16 37 H 0.06 2.47 6.21 -2.39 -0.01 2.45 16 38 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 40 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 2.19 6.89 -2.38 -0.02 2.17 16 44 H 0.05 2.21 7.44 -2.39 -0.02 2.19 16 Total: -1.00 -66.37 349.07 1.36 -65.02 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 1.01 Total: 23.79 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 5.35 Total: -44.53 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -2.79 Total: -115.43 kcal Atomic # 8 Polarization: -105.13 SS G_CDS: -3.98 Total: -109.12 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.04 Total: 45.80 kcal Atomic # 16 Polarization: 134.73 SS G_CDS: -0.26 Total: 134.47 kcal Total: -66.37 1.36 -65.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881910861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.117 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds