Wall clock time and date at job start Tue Mar 31 2020 16:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47038 * 2 1 4 4 N 1.30837 * 125.89742 * 275.26982 * 3 2 1 5 5 N 1.40091 * 108.20283 * 179.97438 * 4 3 2 6 6 C 1.46493 * 126.03640 * 180.02562 * 5 4 3 7 7 C 1.34953 * 107.92322 * 359.76037 * 5 4 3 8 8 C 1.35311 * 107.74630 * 0.38759 * 7 5 4 9 9 S 1.76201 * 126.03942 * 179.87702 * 8 7 5 10 10 O 1.42099 * 106.40465 * 133.43416 * 9 8 7 11 11 O 1.42098 * 106.40401 * 0.51035 * 9 8 7 12 12 N 1.65610 * 107.21586 * 246.97138 * 9 8 7 13 13 C 1.46915 * 120.63048 * 262.85524 * 12 9 8 14 14 C 1.53197 * 108.77795 * 126.41398 * 13 12 9 15 15 C 1.53038 * 109.30854 * 54.63448 * 14 13 12 16 16 C 1.53041 * 109.53886 * 298.63773 * 15 14 13 17 17 H 1.09004 * 109.52541 * 301.39560 * 16 15 14 18 18 C 1.50705 * 109.49901 * 181.32004 * 16 15 14 19 19 H 1.08004 * 119.99476 * 240.16356 * 18 16 15 20 20 C 1.37868 * 120.00211 * 60.16211 * 18 16 15 21 21 N 1.31515 * 119.99940 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00352 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47451 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.46779 * 299.99760 * 22 20 18 25 25 H 1.48504 * 109.47036 * 59.99389 * 22 20 18 26 26 C 1.46926 * 120.62726 * 82.88339 * 12 9 8 27 27 H 1.09005 * 109.46691 * 295.02950 * 1 2 3 28 28 H 1.08992 * 109.47344 * 55.02978 * 1 2 3 29 29 H 1.09006 * 109.46953 * 175.03564 * 1 2 3 30 30 H 1.08999 * 109.46860 * 240.00480 * 2 1 3 31 31 H 1.08997 * 109.47625 * 120.00624 * 2 1 3 32 32 H 1.08998 * 109.47555 * 90.02381 * 6 5 4 33 33 H 1.08999 * 109.47205 * 210.02730 * 6 5 4 34 34 H 1.09000 * 109.47442 * 330.02363 * 6 5 4 35 35 H 1.07997 * 126.12695 * 180.24191 * 7 5 4 36 36 H 1.09000 * 109.59096 * 246.19944 * 13 12 9 37 37 H 1.08999 * 109.59300 * 6.62887 * 13 12 9 38 38 H 1.08994 * 109.50283 * 174.58638 * 14 13 12 39 39 H 1.08998 * 109.49600 * 294.68504 * 14 13 12 40 40 H 1.08997 * 109.45873 * 178.62137 * 15 14 13 41 41 H 1.09002 * 109.46165 * 58.65657 * 15 14 13 42 42 H 0.97005 * 120.00096 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.58774 * 113.79717 * 26 12 9 44 44 H 1.08999 * 109.59005 * 353.36843 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.1963 2.1766 -1.0554 5 7 2.6774 3.4221 -0.6313 6 6 2.9954 4.5624 -1.4942 7 6 2.7907 3.3877 0.7130 8 6 2.4033 2.1596 1.1283 9 16 2.3655 1.5935 2.7965 10 8 1.1085 0.9554 2.9753 11 8 2.8068 2.6799 3.5990 12 7 3.5151 0.4099 2.9386 13 6 3.1450 -1.0086 2.8415 14 6 4.0203 -1.6747 1.7751 15 6 5.4945 -1.4310 2.1058 16 6 5.7797 0.0726 2.0948 17 1 5.5346 0.4827 1.1150 18 6 7.2386 0.3100 2.3887 19 1 7.5279 0.8915 3.2516 20 6 8.2039 -0.2150 1.5560 21 7 7.8516 -0.9234 0.5055 22 14 10.0123 0.0787 1.9206 23 1 10.8408 -0.5867 0.8834 24 1 10.2879 1.5379 1.9140 25 1 10.3456 -0.4820 3.2547 26 6 4.9244 0.7585 3.1648 27 1 -0.3633 0.4348 0.9312 28 1 -0.3633 0.5890 -0.8420 29 1 -0.3633 -1.0239 -0.0889 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.1095 5.1861 -1.6134 33 1 3.7946 5.1491 -1.0412 34 1 3.3189 4.2005 -2.4702 35 1 3.1319 4.1950 1.3441 36 1 3.3070 -1.4953 3.8032 37 1 2.0959 -1.0941 2.5585 38 1 3.8232 -2.7466 1.7601 39 1 3.7913 -1.2486 0.7983 40 1 6.1199 -1.9246 1.3621 41 1 5.7168 -1.8355 3.0933 42 1 8.5307 -1.2931 -0.0802 43 1 5.2314 0.4160 4.1529 44 1 5.0493 1.8390 3.0951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882386976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:45 Heat of formation + Delta-G solvation = -7.396003 kcal Electronic energy + Delta-G solvation = -27848.190515 eV Core-core repulsion = 24121.939026 eV Total energy + Delta-G solvation = -3726.251489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24944 -37.74646 -36.89203 -35.44375 -34.73170 -33.30383 -31.82249 -31.06180 -30.28333 -30.09101 -26.85256 -25.12780 -23.66119 -23.47213 -21.82066 -21.63486 -20.05117 -19.28044 -18.31703 -17.69829 -16.91932 -16.19113 -15.64953 -15.62729 -15.35154 -14.67479 -14.58175 -14.23226 -13.84601 -13.51200 -13.35009 -13.20825 -12.97365 -12.91030 -12.76222 -12.64300 -12.14438 -12.01553 -11.75213 -11.63974 -11.59205 -11.31353 -11.24823 -11.00140 -10.89776 -10.81803 -10.74335 -10.35404 -10.22628 -9.93651 -9.79504 -9.42666 -9.31266 -9.01248 -8.85134 -8.44054 -8.12713 -6.02650 -4.10132 0.87839 1.66566 2.37799 2.42275 3.28890 3.33925 3.36157 3.48806 4.12195 4.35467 4.40210 4.56279 4.79957 4.87154 4.95079 5.12657 5.22414 5.25313 5.30826 5.43127 5.51629 5.61613 5.66397 5.71902 5.82992 6.01329 6.04291 6.15553 6.31462 6.35569 6.36279 6.50076 6.53798 6.63614 6.68811 6.82087 6.91987 7.06895 7.23886 7.45400 7.55576 7.69804 7.94361 8.09181 8.38917 8.93589 9.54779 11.02377 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.005134 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.841027 B = 5452.764300 C = 6066.345985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C 0.170 3.830 4 N -0.295 5.295 5 N -0.365 5.365 6 C 0.095 3.905 7 C 0.177 3.823 8 C -0.807 4.807 9 S 2.719 3.281 10 O -0.967 6.967 11 O -0.972 6.972 12 N -0.991 5.991 13 C 0.120 3.880 14 C -0.138 4.138 15 C -0.108 4.108 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.516 4.516 19 H 0.057 0.943 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.891 3.109 23 H -0.288 1.288 24 H -0.278 1.278 25 H -0.277 1.277 26 C 0.130 3.870 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.191 0.809 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.063 0.937 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 5.240 -1.902 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C 0.001 3.999 4 N -0.115 5.115 5 N -0.141 5.141 6 C -0.047 4.047 7 C 0.024 3.976 8 C -0.905 4.905 9 S 2.808 3.192 10 O -0.957 6.957 11 O -0.962 6.962 12 N -0.830 5.830 13 C -0.005 4.005 14 C -0.177 4.177 15 C -0.146 4.146 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.555 4.555 19 H 0.075 0.925 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.719 3.281 23 H -0.214 1.214 24 H -0.204 1.204 25 H -0.202 1.202 26 C 0.006 3.994 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.208 0.792 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.336 5.702 -2.843 13.884 hybrid contribution 1.621 0.322 0.090 1.656 sum -10.715 6.024 -2.753 12.596 Atomic orbital electron populations 1.21755 0.93453 1.02312 1.03045 1.20414 0.97066 0.88206 1.04721 1.21751 0.93578 0.96098 0.88507 1.77321 1.21317 0.90566 1.22289 1.48911 1.48515 1.11535 1.05179 1.22004 1.02020 0.85022 0.95611 1.22420 0.92656 0.97420 0.85137 1.31636 1.29218 1.04292 1.25363 1.00979 0.72702 0.72704 0.72855 1.93511 1.40644 1.75852 1.85674 1.93523 1.82387 1.54101 1.66178 1.57606 1.21419 1.17245 1.86763 1.21519 0.98546 0.80239 1.00244 1.22082 0.98859 0.98742 0.98049 1.21551 0.91983 0.99994 1.01105 1.18961 0.93248 0.92107 0.93632 0.95347 1.21083 0.90561 1.33134 1.10751 0.92488 1.24927 0.98820 0.95040 0.94947 1.69872 1.33265 1.34868 1.14605 0.86683 0.85088 0.78369 0.77982 1.21402 1.20361 1.20207 1.21761 0.77301 0.99450 1.00869 0.90844 0.92804 0.91647 0.89431 0.88993 0.90374 0.88855 0.88776 0.79201 0.91358 0.90041 0.92498 0.92238 0.88883 0.94533 0.92983 0.91854 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.89 37.16 0.37 -1.50 16 2 C -0.07 -0.95 5.68 -27.88 -0.16 -1.11 16 3 C 0.17 2.85 6.47 -82.40 -0.53 2.31 16 4 N -0.29 -4.93 12.58 33.67 0.42 -4.51 16 5 N -0.36 -5.17 4.01 -68.17 -0.27 -5.44 16 6 C 0.09 0.83 11.47 59.84 0.69 1.52 16 7 C 0.18 2.59 11.12 -17.22 -0.19 2.40 16 8 C -0.81 -13.47 6.15 -40.01 -0.25 -13.71 16 9 S 2.72 47.19 5.26 -107.50 -0.57 46.63 16 10 O -0.97 -17.20 15.42 -57.17 -0.88 -18.08 16 11 O -0.97 -18.47 16.71 -57.17 -0.96 -19.43 16 12 N -0.99 -17.68 3.29 -113.53 -0.37 -18.05 16 13 C 0.12 1.93 5.48 -3.71 -0.02 1.91 16 14 C -0.14 -2.43 5.78 -26.61 -0.15 -2.58 16 15 C -0.11 -2.37 4.96 -26.69 -0.13 -2.50 16 16 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 17 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 18 C -0.52 -13.46 8.56 -34.44 -0.29 -13.76 16 19 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 22 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 C 0.13 2.62 5.58 -3.71 -0.02 2.60 16 27 H 0.07 1.01 7.52 -51.93 -0.39 0.62 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.34 3.24 -51.93 -0.17 1.17 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.19 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.17 5.34 -51.93 -0.28 0.89 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.07 6.88 -51.93 -0.36 0.71 16 40 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.39 7.33 -51.93 -0.38 1.01 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -32.59 358.18 -9.12 -41.71 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.50 Total: 2.03 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -1.00 Total: -22.08 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.40 Total: -51.80 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.84 Total: -37.51 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 47.19 SS G_CDS: -0.57 Total: 46.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.59 -9.12 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.315 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds