Wall clock time and date at job start Tue Mar 31 2020 16:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47038 * 2 1 4 4 N 1.30837 * 125.89742 * 275.26982 * 3 2 1 5 5 N 1.40091 * 108.20283 * 179.97438 * 4 3 2 6 6 C 1.46493 * 126.03640 * 180.02562 * 5 4 3 7 7 C 1.34953 * 107.92322 * 359.76037 * 5 4 3 8 8 C 1.35311 * 107.74630 * 0.38759 * 7 5 4 9 9 S 1.76201 * 126.03942 * 179.87702 * 8 7 5 10 10 O 1.42099 * 106.40465 * 133.43416 * 9 8 7 11 11 O 1.42098 * 106.40401 * 0.51035 * 9 8 7 12 12 N 1.65610 * 107.21586 * 246.97138 * 9 8 7 13 13 C 1.46915 * 120.63048 * 262.85524 * 12 9 8 14 14 C 1.53197 * 108.77795 * 126.41398 * 13 12 9 15 15 C 1.53038 * 109.30854 * 54.63448 * 14 13 12 16 16 C 1.53041 * 109.53886 * 298.63773 * 15 14 13 17 17 H 1.09004 * 109.52541 * 301.39560 * 16 15 14 18 18 C 1.50705 * 109.49901 * 181.32004 * 16 15 14 19 19 H 1.08004 * 119.99476 * 240.16356 * 18 16 15 20 20 C 1.37868 * 120.00211 * 60.16211 * 18 16 15 21 21 N 1.31515 * 119.99940 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00352 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47451 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.46779 * 299.99760 * 22 20 18 25 25 H 1.48504 * 109.47036 * 59.99389 * 22 20 18 26 26 C 1.46926 * 120.62726 * 82.88339 * 12 9 8 27 27 H 1.09005 * 109.46691 * 295.02950 * 1 2 3 28 28 H 1.08992 * 109.47344 * 55.02978 * 1 2 3 29 29 H 1.09006 * 109.46953 * 175.03564 * 1 2 3 30 30 H 1.08999 * 109.46860 * 240.00480 * 2 1 3 31 31 H 1.08997 * 109.47625 * 120.00624 * 2 1 3 32 32 H 1.08998 * 109.47555 * 90.02381 * 6 5 4 33 33 H 1.08999 * 109.47205 * 210.02730 * 6 5 4 34 34 H 1.09000 * 109.47442 * 330.02363 * 6 5 4 35 35 H 1.07997 * 126.12695 * 180.24191 * 7 5 4 36 36 H 1.09000 * 109.59096 * 246.19944 * 13 12 9 37 37 H 1.08999 * 109.59300 * 6.62887 * 13 12 9 38 38 H 1.08994 * 109.50283 * 174.58638 * 14 13 12 39 39 H 1.08998 * 109.49600 * 294.68504 * 14 13 12 40 40 H 1.08997 * 109.45873 * 178.62137 * 15 14 13 41 41 H 1.09002 * 109.46165 * 58.65657 * 15 14 13 42 42 H 0.97005 * 120.00096 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.58774 * 113.79717 * 26 12 9 44 44 H 1.08999 * 109.59005 * 353.36843 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.1963 2.1766 -1.0554 5 7 2.6774 3.4221 -0.6313 6 6 2.9954 4.5624 -1.4942 7 6 2.7907 3.3877 0.7130 8 6 2.4033 2.1596 1.1283 9 16 2.3655 1.5935 2.7965 10 8 1.1085 0.9554 2.9753 11 8 2.8068 2.6799 3.5990 12 7 3.5151 0.4099 2.9386 13 6 3.1450 -1.0086 2.8415 14 6 4.0203 -1.6747 1.7751 15 6 5.4945 -1.4310 2.1058 16 6 5.7797 0.0726 2.0948 17 1 5.5346 0.4827 1.1150 18 6 7.2386 0.3100 2.3887 19 1 7.5279 0.8915 3.2516 20 6 8.2039 -0.2150 1.5560 21 7 7.8516 -0.9234 0.5055 22 14 10.0123 0.0787 1.9206 23 1 10.8408 -0.5867 0.8834 24 1 10.2879 1.5379 1.9140 25 1 10.3456 -0.4820 3.2547 26 6 4.9244 0.7585 3.1648 27 1 -0.3633 0.4348 0.9312 28 1 -0.3633 0.5890 -0.8420 29 1 -0.3633 -1.0239 -0.0889 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.1095 5.1861 -1.6134 33 1 3.7946 5.1491 -1.0412 34 1 3.3189 4.2005 -2.4702 35 1 3.1319 4.1950 1.3441 36 1 3.3070 -1.4953 3.8032 37 1 2.0959 -1.0941 2.5585 38 1 3.8232 -2.7466 1.7601 39 1 3.7913 -1.2486 0.7983 40 1 6.1199 -1.9246 1.3621 41 1 5.7168 -1.8355 3.0933 42 1 8.5307 -1.2931 -0.0802 43 1 5.2314 0.4160 4.1529 44 1 5.0493 1.8390 3.0951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882386976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:44 Heat of formation + Delta-G solvation = -29.227413 kcal Electronic energy + Delta-G solvation = -27849.137196 eV Core-core repulsion = 24121.939026 eV Total energy + Delta-G solvation = -3727.198170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.38304 -39.30432 -38.29689 -36.85507 -35.81573 -35.14984 -32.83951 -32.63452 -31.81225 -31.45659 -27.78823 -27.00918 -25.15207 -24.60264 -23.29726 -22.92980 -21.30908 -20.80309 -19.68445 -19.03940 -18.33753 -18.01338 -17.00187 -16.72925 -16.57231 -16.46281 -15.71531 -15.46287 -15.24011 -15.06519 -14.75102 -14.37509 -14.32274 -14.25613 -13.92257 -13.78104 -13.72885 -13.22033 -13.11950 -12.99667 -12.84408 -12.76996 -12.73353 -12.65596 -12.51947 -12.31086 -12.06368 -11.84492 -11.74507 -11.55042 -11.47892 -11.04411 -10.72627 -10.50477 -10.37961 -10.16298 -9.69642 -8.04367 -6.18500 -0.46528 0.53436 1.16956 1.43446 1.44488 1.45242 1.52231 2.11626 2.46748 2.81666 3.19087 3.22689 3.47642 3.69338 3.88534 3.91209 4.12957 4.29061 4.31029 4.34154 4.39450 4.43132 4.55434 4.59712 4.63348 4.63866 4.68500 4.87294 4.93326 5.00392 5.03454 5.11626 5.16497 5.28969 5.36565 5.43866 5.44424 5.60278 5.70011 5.78760 5.82667 6.04385 6.22264 6.38994 6.43607 6.93481 7.49337 8.98604 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.005134 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.841027 B = 5452.764300 C = 6066.345985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C 0.158 3.842 4 N -0.323 5.323 5 N -0.362 5.362 6 C 0.082 3.918 7 C 0.175 3.825 8 C -0.833 4.833 9 S 2.734 3.266 10 O -0.971 6.971 11 O -0.990 6.990 12 N -0.993 5.993 13 C 0.116 3.884 14 C -0.130 4.130 15 C -0.104 4.104 16 C 0.042 3.958 17 H -0.006 1.006 18 C -0.534 4.534 19 H 0.057 0.943 20 C 0.018 3.982 21 N -0.913 5.913 22 Si 0.948 3.052 23 H -0.289 1.289 24 H -0.273 1.273 25 H -0.270 1.270 26 C 0.140 3.860 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.220 0.780 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.258 0.742 43 H 0.069 0.931 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.367 5.764 -1.497 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.011 4.011 4 N -0.143 5.143 5 N -0.138 5.138 6 C -0.058 4.058 7 C 0.020 3.980 8 C -0.932 4.932 9 S 2.824 3.176 10 O -0.961 6.961 11 O -0.980 6.980 12 N -0.832 5.832 13 C -0.008 4.008 14 C -0.169 4.169 15 C -0.142 4.142 16 C 0.022 3.978 17 H 0.012 0.988 18 C -0.572 4.572 19 H 0.075 0.925 20 C -0.181 4.181 21 N -0.553 5.553 22 Si 0.775 3.225 23 H -0.214 1.214 24 H -0.199 1.199 25 H -0.195 1.195 26 C 0.015 3.985 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.237 0.763 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.897 6.226 -2.433 14.527 hybrid contribution 1.792 0.228 -0.111 1.810 sum -11.105 6.454 -2.543 13.094 Atomic orbital electron populations 1.21728 0.92038 1.03797 1.02414 1.20542 0.98308 0.87379 1.04766 1.22095 0.93583 0.96952 0.88517 1.77239 1.22307 0.91882 1.22909 1.49306 1.47158 1.11725 1.05654 1.22465 1.04163 0.83943 0.95181 1.22935 0.91693 0.97612 0.85753 1.31555 1.31276 1.05539 1.24831 1.00401 0.72243 0.72136 0.72802 1.93497 1.40633 1.75965 1.86042 1.93491 1.82647 1.54693 1.67187 1.57579 1.20313 1.18294 1.86994 1.21705 0.99332 0.79226 1.00580 1.21980 0.96030 1.00658 0.98202 1.21376 0.94487 0.98439 0.99886 1.18865 0.92757 0.93350 0.92845 0.98787 1.21492 0.92258 1.32833 1.10655 0.92456 1.25635 1.02602 0.94985 0.94904 1.70021 1.34161 1.35714 1.15384 0.85763 0.80589 0.78313 0.77866 1.21429 1.19882 1.19545 1.21466 0.78178 0.99061 0.99765 0.91971 0.92751 0.89223 0.89118 0.89141 0.87873 0.86283 0.88665 0.76317 0.89631 0.87836 0.89845 0.93008 0.92271 0.94629 0.93263 0.91316 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.89 71.98 0.71 -2.70 16 2 C -0.07 -2.02 5.68 29.85 0.17 -1.85 16 3 C 0.16 5.21 6.47 43.10 0.28 5.49 16 4 N -0.32 -10.66 12.58 -47.38 -0.60 -11.25 16 5 N -0.36 -9.83 4.01 -369.59 -1.48 -11.31 16 6 C 0.08 1.27 11.47 127.77 1.47 2.74 16 7 C 0.17 4.91 11.12 83.54 0.93 5.84 16 8 C -0.83 -27.24 6.15 21.99 0.14 -27.11 16 9 S 2.73 92.26 5.26 -56.49 -0.30 91.96 16 10 O -0.97 -33.25 15.42 -128.00 -1.97 -35.23 16 11 O -0.99 -36.65 16.71 -128.00 -2.14 -38.79 16 12 N -0.99 -34.51 3.29 -513.09 -1.69 -36.20 16 13 C 0.12 3.53 5.48 86.37 0.47 4.01 16 14 C -0.13 -4.45 5.78 30.67 0.18 -4.27 16 15 C -0.10 -4.58 4.96 30.62 0.15 -4.43 16 16 C 0.04 1.99 2.25 -11.46 -0.03 1.96 16 17 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 18 C -0.53 -28.11 8.56 25.60 0.22 -27.89 16 19 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 20 C 0.02 0.95 5.30 84.65 0.45 1.40 16 21 N -0.91 -51.32 11.32 21.44 0.24 -51.07 16 22 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.14 5.61 5.58 86.36 0.48 6.09 16 27 H 0.06 1.63 7.52 -2.38 -0.02 1.61 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.09 2.54 3.24 -2.39 -0.01 2.53 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.22 4.55 8.06 -2.91 -0.02 4.52 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.10 2.74 5.34 -2.39 -0.01 2.72 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.05 1.85 6.88 -2.39 -0.02 1.83 16 40 H 0.06 3.03 6.05 -2.39 -0.01 3.01 16 41 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 43 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.07 2.75 7.33 -2.39 -0.02 2.73 16 Total: -1.00 -70.52 358.18 0.71 -69.80 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 1.00 Total: 18.33 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 5.62 Total: -40.72 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -3.52 Total: -109.84 kcal Atomic # 8 Polarization: -69.90 SS G_CDS: -4.11 Total: -74.02 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 92.26 SS G_CDS: -0.30 Total: 91.96 kcal Total: -70.52 0.71 -69.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.576 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds