Wall clock time and date at job start Tue Mar 31 2020 16:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50690 * 109.47539 * 2 1 4 4 N 1.30841 * 125.90075 * 275.77969 * 3 2 1 5 5 N 1.40084 * 108.20587 * 180.25584 * 4 3 2 6 6 C 1.46494 * 126.03656 * 179.73848 * 5 4 3 7 7 C 1.34948 * 107.92403 * 359.71706 * 5 4 3 8 8 C 1.35308 * 107.74729 * 0.02562 * 7 5 4 9 9 S 1.76209 * 126.04041 * 180.02562 * 8 7 5 10 10 O 1.42096 * 106.40080 * 132.79107 * 9 8 7 11 11 O 1.42105 * 106.39791 * 359.87111 * 9 8 7 12 12 N 1.65596 * 107.21643 * 246.33268 * 9 8 7 13 13 C 1.46921 * 120.62958 * 263.16459 * 12 9 8 14 14 C 1.52761 * 109.00785 * 233.58424 * 13 12 9 15 15 C 1.53042 * 109.38472 * 305.58515 * 14 13 12 16 16 C 1.53043 * 109.53399 * 61.24108 * 15 14 13 17 17 H 1.08999 * 109.49729 * 58.58627 * 16 15 14 18 18 C 1.50700 * 109.49471 * 178.68310 * 16 15 14 19 19 H 1.07998 * 119.99673 * 119.84195 * 18 16 15 20 20 C 1.37878 * 119.99916 * 299.83197 * 18 16 15 21 21 N 1.31512 * 120.00408 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99878 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47111 * 90.00521 * 22 20 18 24 24 H 1.48501 * 109.47044 * 210.00549 * 22 20 18 25 25 H 1.48499 * 109.47077 * 330.00351 * 22 20 18 26 26 C 1.46927 * 120.63382 * 83.44518 * 12 9 8 27 27 H 1.08997 * 109.47229 * 55.08681 * 1 2 3 28 28 H 1.09003 * 109.47819 * 175.09394 * 1 2 3 29 29 H 1.09005 * 109.47007 * 295.08582 * 1 2 3 30 30 H 1.09000 * 109.46955 * 239.99714 * 2 1 3 31 31 H 1.09006 * 109.47102 * 120.00341 * 2 1 3 32 32 H 1.08999 * 109.47141 * 269.97374 * 6 5 4 33 33 H 1.08997 * 109.47564 * 29.97402 * 6 5 4 34 34 H 1.09003 * 109.47536 * 149.97619 * 6 5 4 35 35 H 1.08004 * 126.12692 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.59031 * 353.41725 * 13 12 9 37 37 H 1.09003 * 109.58828 * 113.84517 * 13 12 9 38 38 H 1.09004 * 109.56884 * 185.55345 * 14 13 12 39 39 H 1.08997 * 109.35939 * 65.50259 * 14 13 12 40 40 H 1.08994 * 109.45973 * 301.22260 * 15 14 13 41 41 H 1.08998 * 109.44974 * 181.24998 * 15 14 13 42 42 H 0.96991 * 120.00707 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.58633 * 246.15580 * 26 12 9 44 44 H 1.09003 * 109.58338 * 6.57849 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1875 2.1796 -1.0545 5 7 2.6785 3.4215 -0.6315 6 6 2.9969 4.5617 -1.4944 7 6 2.8058 3.3823 0.7114 8 6 2.4099 2.1571 1.1276 9 16 2.3805 1.5880 2.7950 10 8 1.1130 0.9753 2.9875 11 8 2.8534 2.6635 3.5944 12 7 3.5073 0.3811 2.9209 13 6 3.1083 -1.0292 2.8185 14 6 3.6219 -1.7818 4.0446 15 6 5.1306 -1.5634 4.1795 16 6 5.4167 -0.0722 4.3711 17 1 4.8967 0.2868 5.2592 18 6 6.8998 0.1382 4.5362 19 1 7.4381 0.7601 3.8363 20 6 7.5693 -0.4630 5.5808 21 7 6.9138 -1.2206 6.4329 22 14 9.4076 -0.2016 5.7859 23 1 9.6459 0.9868 6.6439 24 1 10.0101 -1.4005 6.4222 25 1 10.0280 0.0166 4.4545 26 6 4.9242 0.6999 3.1431 27 1 -0.3633 0.5881 -0.8427 28 1 -0.3635 -1.0239 -0.0879 29 1 -0.3633 0.4357 0.9308 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0384 4.4989 -1.8098 33 1 2.3501 4.5453 -2.3716 34 1 2.8393 5.4892 -0.9440 35 1 3.1609 4.1847 1.3411 36 1 2.0213 -1.0994 2.7773 37 1 3.5391 -1.4664 1.9178 38 1 3.4172 -2.8465 3.9316 39 1 3.1188 -1.4068 4.9358 40 1 5.6307 -1.9162 3.2775 41 1 5.5020 -2.1180 5.0412 42 1 7.3848 -1.6438 7.1676 43 1 5.5062 0.4066 2.2694 44 1 5.0351 1.7704 3.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882386977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:50 Heat of formation + Delta-G solvation = -7.410862 kcal Electronic energy + Delta-G solvation = -27290.656121 eV Core-core repulsion = 23564.403988 eV Total energy + Delta-G solvation = -3726.252133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44084 -37.69460 -36.88878 -35.41316 -34.91183 -33.27160 -31.96535 -31.06455 -30.45694 -30.06121 -27.01418 -25.11249 -23.75472 -23.53115 -21.91410 -21.63563 -20.16844 -19.44445 -18.33367 -17.54891 -17.10240 -16.14425 -15.82305 -15.65675 -15.39457 -14.77230 -14.57514 -14.25940 -13.88844 -13.61372 -13.42666 -13.20958 -13.12349 -13.04367 -12.75900 -12.61176 -12.24633 -12.08571 -11.74382 -11.71450 -11.60993 -11.43507 -11.30484 -11.05364 -10.95870 -10.76792 -10.68538 -10.48058 -10.17698 -9.89277 -9.74306 -9.53237 -9.35456 -9.21433 -8.79713 -8.41009 -8.12112 -5.98127 -4.05351 0.82593 1.47977 2.18164 2.23118 3.31383 3.38154 3.40056 3.48912 4.03844 4.26148 4.41272 4.44118 4.62763 4.78603 4.79230 4.97208 5.04379 5.28538 5.29900 5.33948 5.41066 5.45622 5.49807 5.73803 5.81997 5.88957 5.98520 6.11833 6.23811 6.28895 6.36762 6.38875 6.51877 6.63181 6.66738 6.69244 6.94921 7.08562 7.27905 7.35460 7.48968 7.74103 8.00766 8.13299 8.42712 8.97940 9.59095 11.07365 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.004126 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.028993 B = 6784.443991 C = 7605.533311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C 0.166 3.834 4 N -0.297 5.297 5 N -0.367 5.367 6 C 0.094 3.906 7 C 0.175 3.825 8 C -0.810 4.810 9 S 2.715 3.285 10 O -0.964 6.964 11 O -0.964 6.964 12 N -0.990 5.990 13 C 0.119 3.881 14 C -0.131 4.131 15 C -0.110 4.110 16 C 0.042 3.958 17 H 0.033 0.967 18 C -0.514 4.514 19 H 0.056 0.944 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.128 3.872 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.193 0.807 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.094 0.906 42 H 0.260 0.740 43 H 0.055 0.945 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 5.926 -14.399 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 C -0.004 4.004 4 N -0.117 5.117 5 N -0.144 5.144 6 C -0.047 4.047 7 C 0.022 3.978 8 C -0.906 4.906 9 S 2.804 3.196 10 O -0.954 6.954 11 O -0.954 6.954 12 N -0.830 5.830 13 C -0.006 4.006 14 C -0.170 4.170 15 C -0.148 4.148 16 C 0.021 3.979 17 H 0.051 0.949 18 C -0.553 4.553 19 H 0.074 0.926 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C 0.004 3.996 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.210 0.790 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.541 6.405 -15.061 19.467 hybrid contribution 1.543 0.318 0.187 1.587 sum -8.998 6.723 -14.873 18.638 Atomic orbital electron populations 1.21753 0.93220 1.02464 1.03224 1.20344 0.97420 0.87999 1.04431 1.21825 0.93758 0.96246 0.88560 1.77314 1.21325 0.90711 1.22390 1.48953 1.48304 1.11801 1.05361 1.22016 1.02743 0.84764 0.95175 1.22492 0.92714 0.97524 0.85051 1.31858 1.28552 1.04476 1.25739 1.01170 0.72880 0.72881 0.72708 1.93510 1.39979 1.76655 1.85252 1.93548 1.81411 1.54685 1.65776 1.57575 1.21244 1.17388 1.86801 1.21442 0.99390 0.80358 0.99424 1.21884 1.00196 0.98134 0.96835 1.21583 0.90682 1.00517 1.01994 1.18946 0.95565 0.91519 0.91826 0.94864 1.21084 0.92840 1.29866 1.11554 0.92554 1.24928 0.98088 0.95083 0.95664 1.69871 1.35601 1.31837 1.15273 0.86611 0.85606 0.77617 0.78213 1.20703 1.21308 1.20006 1.21785 0.77048 1.00258 1.00468 0.92763 0.91520 0.90679 0.89539 0.89201 0.90038 0.88921 0.88920 0.78988 0.89827 0.92140 0.92439 0.92237 0.94631 0.88759 0.92978 0.92690 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.89 37.16 0.37 -1.32 16 2 C -0.06 -0.78 6.13 -27.89 -0.17 -0.95 16 3 C 0.17 2.41 6.47 -82.41 -0.53 1.87 16 4 N -0.30 -4.26 12.58 33.67 0.42 -3.83 16 5 N -0.37 -4.38 4.01 -68.17 -0.27 -4.66 16 6 C 0.09 0.62 11.47 59.84 0.69 1.31 16 7 C 0.18 2.24 11.12 -17.23 -0.19 2.05 16 8 C -0.81 -12.18 6.15 -40.02 -0.25 -12.43 16 9 S 2.72 47.00 5.30 -107.50 -0.57 46.43 16 10 O -0.96 -17.47 15.54 -57.17 -0.89 -18.35 16 11 O -0.96 -19.06 16.53 -57.17 -0.95 -20.00 16 12 N -0.99 -17.69 3.30 -113.77 -0.37 -18.06 16 13 C 0.12 1.92 4.72 -3.94 -0.02 1.90 16 14 C -0.13 -2.41 6.06 -26.83 -0.16 -2.57 16 15 C -0.11 -2.45 4.96 -26.69 -0.13 -2.59 16 16 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 17 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 19 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 22 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.13 2.60 5.68 -3.71 -0.02 2.58 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.97 7.59 -51.93 -0.39 0.57 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.11 4.45 -51.93 -0.23 0.88 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.19 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.08 1.21 6.02 -51.93 -0.31 0.90 16 37 H 0.06 0.86 7.92 -51.93 -0.41 0.45 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 2.39 6.05 -51.93 -0.31 2.08 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.50 7.09 -51.93 -0.37 1.13 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -33.38 360.99 -9.25 -42.62 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.65 Total: 0.41 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.02 Total: -21.66 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.40 Total: -50.69 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -1.83 Total: -38.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 47.00 SS G_CDS: -0.57 Total: 46.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.38 -9.25 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.213 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds