Wall clock time and date at job start Tue Mar 31 2020 16:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50690 * 109.47539 * 2 1 4 4 N 1.30841 * 125.90075 * 275.77969 * 3 2 1 5 5 N 1.40084 * 108.20587 * 180.25584 * 4 3 2 6 6 C 1.46494 * 126.03656 * 179.73848 * 5 4 3 7 7 C 1.34948 * 107.92403 * 359.71706 * 5 4 3 8 8 C 1.35308 * 107.74729 * 0.02562 * 7 5 4 9 9 S 1.76209 * 126.04041 * 180.02562 * 8 7 5 10 10 O 1.42096 * 106.40080 * 132.79107 * 9 8 7 11 11 O 1.42105 * 106.39791 * 359.87111 * 9 8 7 12 12 N 1.65596 * 107.21643 * 246.33268 * 9 8 7 13 13 C 1.46921 * 120.62958 * 263.16459 * 12 9 8 14 14 C 1.52761 * 109.00785 * 233.58424 * 13 12 9 15 15 C 1.53042 * 109.38472 * 305.58515 * 14 13 12 16 16 C 1.53043 * 109.53399 * 61.24108 * 15 14 13 17 17 H 1.08999 * 109.49729 * 58.58627 * 16 15 14 18 18 C 1.50700 * 109.49471 * 178.68310 * 16 15 14 19 19 H 1.07998 * 119.99673 * 119.84195 * 18 16 15 20 20 C 1.37878 * 119.99916 * 299.83197 * 18 16 15 21 21 N 1.31512 * 120.00408 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99878 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47111 * 90.00521 * 22 20 18 24 24 H 1.48501 * 109.47044 * 210.00549 * 22 20 18 25 25 H 1.48499 * 109.47077 * 330.00351 * 22 20 18 26 26 C 1.46927 * 120.63382 * 83.44518 * 12 9 8 27 27 H 1.08997 * 109.47229 * 55.08681 * 1 2 3 28 28 H 1.09003 * 109.47819 * 175.09394 * 1 2 3 29 29 H 1.09005 * 109.47007 * 295.08582 * 1 2 3 30 30 H 1.09000 * 109.46955 * 239.99714 * 2 1 3 31 31 H 1.09006 * 109.47102 * 120.00341 * 2 1 3 32 32 H 1.08999 * 109.47141 * 269.97374 * 6 5 4 33 33 H 1.08997 * 109.47564 * 29.97402 * 6 5 4 34 34 H 1.09003 * 109.47536 * 149.97619 * 6 5 4 35 35 H 1.08004 * 126.12692 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.59031 * 353.41725 * 13 12 9 37 37 H 1.09003 * 109.58828 * 113.84517 * 13 12 9 38 38 H 1.09004 * 109.56884 * 185.55345 * 14 13 12 39 39 H 1.08997 * 109.35939 * 65.50259 * 14 13 12 40 40 H 1.08994 * 109.45973 * 301.22260 * 15 14 13 41 41 H 1.08998 * 109.44974 * 181.24998 * 15 14 13 42 42 H 0.96991 * 120.00707 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.58633 * 246.15580 * 26 12 9 44 44 H 1.09003 * 109.58338 * 6.57849 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1875 2.1796 -1.0545 5 7 2.6785 3.4215 -0.6315 6 6 2.9969 4.5617 -1.4944 7 6 2.8058 3.3823 0.7114 8 6 2.4099 2.1571 1.1276 9 16 2.3805 1.5880 2.7950 10 8 1.1130 0.9753 2.9875 11 8 2.8534 2.6635 3.5944 12 7 3.5073 0.3811 2.9209 13 6 3.1083 -1.0292 2.8185 14 6 3.6219 -1.7818 4.0446 15 6 5.1306 -1.5634 4.1795 16 6 5.4167 -0.0722 4.3711 17 1 4.8967 0.2868 5.2592 18 6 6.8998 0.1382 4.5362 19 1 7.4381 0.7601 3.8363 20 6 7.5693 -0.4630 5.5808 21 7 6.9138 -1.2206 6.4329 22 14 9.4076 -0.2016 5.7859 23 1 9.6459 0.9868 6.6439 24 1 10.0101 -1.4005 6.4222 25 1 10.0280 0.0166 4.4545 26 6 4.9242 0.6999 3.1431 27 1 -0.3633 0.5881 -0.8427 28 1 -0.3635 -1.0239 -0.0879 29 1 -0.3633 0.4357 0.9308 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0384 4.4989 -1.8098 33 1 2.3501 4.5453 -2.3716 34 1 2.8393 5.4892 -0.9440 35 1 3.1609 4.1847 1.3411 36 1 2.0213 -1.0994 2.7773 37 1 3.5391 -1.4664 1.9178 38 1 3.4172 -2.8465 3.9316 39 1 3.1188 -1.4068 4.9358 40 1 5.6307 -1.9162 3.2775 41 1 5.5020 -2.1180 5.0412 42 1 7.3848 -1.6438 7.1676 43 1 5.5062 0.4066 2.2694 44 1 5.0351 1.7704 3.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882386977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:49 Heat of formation + Delta-G solvation = -30.248280 kcal Electronic energy + Delta-G solvation = -27291.646426 eV Core-core repulsion = 23564.403988 eV Total energy + Delta-G solvation = -3727.242438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.41739 -39.27769 -38.30865 -36.84735 -35.82679 -35.14026 -32.79402 -32.68050 -31.82406 -31.47439 -27.78870 -27.01244 -25.15037 -24.62935 -23.29524 -22.90033 -21.19157 -21.10007 -19.57374 -18.92571 -18.47976 -17.98559 -16.90549 -16.74869 -16.66514 -16.39669 -15.71699 -15.35694 -15.21161 -15.02148 -14.81605 -14.42914 -14.37849 -14.22494 -13.91459 -13.79155 -13.71612 -13.20485 -13.13361 -13.00839 -12.87687 -12.76558 -12.73862 -12.65343 -12.49367 -12.30969 -12.04746 -11.80435 -11.72903 -11.61313 -11.44945 -11.01851 -10.71208 -10.53375 -10.37521 -10.20752 -9.70472 -8.02733 -6.17383 -0.50857 0.49303 1.12472 1.41459 1.45602 1.46690 1.56038 2.14005 2.48393 2.84407 3.17611 3.24308 3.46396 3.69865 3.89097 3.92870 4.15397 4.30101 4.32673 4.35419 4.40168 4.42284 4.54212 4.62197 4.63489 4.63876 4.71297 4.87136 4.92306 5.00500 5.04616 5.11691 5.14939 5.27920 5.35000 5.41416 5.45124 5.60345 5.70554 5.78312 5.80298 6.05056 6.22827 6.36028 6.43297 6.94523 7.50357 9.01287 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.004126 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.028993 B = 6784.443991 C = 7605.533311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C 0.158 3.842 4 N -0.316 5.316 5 N -0.360 5.360 6 C 0.081 3.919 7 C 0.177 3.823 8 C -0.828 4.828 9 S 2.728 3.272 10 O -0.976 6.976 11 O -0.996 6.996 12 N -0.995 5.995 13 C 0.117 3.883 14 C -0.128 4.128 15 C -0.103 4.103 16 C 0.035 3.965 17 H -0.010 1.010 18 C -0.532 4.532 19 H 0.059 0.941 20 C 0.014 3.986 21 N -0.916 5.916 22 Si 0.953 3.047 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.265 1.265 26 C 0.141 3.859 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.219 0.781 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.889 6.462 -16.809 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.012 4.012 4 N -0.137 5.137 5 N -0.136 5.136 6 C -0.058 4.058 7 C 0.022 3.978 8 C -0.929 4.929 9 S 2.820 3.180 10 O -0.966 6.966 11 O -0.986 6.986 12 N -0.834 5.834 13 C -0.008 4.008 14 C -0.167 4.167 15 C -0.141 4.141 16 C 0.015 3.985 17 H 0.008 0.992 18 C -0.571 4.571 19 H 0.078 0.922 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.779 3.221 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.189 1.189 26 C 0.016 3.984 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.235 0.765 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.473 6.934 -17.468 21.515 hybrid contribution 1.488 0.241 0.877 1.744 sum -8.985 7.174 -16.591 20.185 Atomic orbital electron populations 1.21736 0.92653 1.03772 1.02194 1.20493 0.97942 0.87232 1.05163 1.22138 0.93647 0.97116 0.88251 1.77260 1.21990 0.91778 1.22666 1.49342 1.46653 1.12057 1.05584 1.22497 1.03812 0.84136 0.95356 1.22922 0.91624 0.97437 0.85823 1.31411 1.31356 1.05987 1.24136 1.00429 0.72230 0.72137 0.73198 1.93487 1.40272 1.76866 1.86021 1.93501 1.81788 1.55692 1.67660 1.57510 1.20111 1.18436 1.87345 1.21618 1.00733 0.79218 0.99181 1.21829 0.97038 1.00394 0.97424 1.21387 0.93565 0.98620 1.00554 1.18920 0.94286 0.93313 0.91987 0.99190 1.21492 0.94270 1.29649 1.11674 0.92246 1.25701 1.02265 0.94946 0.95526 1.70027 1.37114 1.32671 1.15714 0.85632 0.80668 0.77343 0.78422 1.20611 1.21129 1.18926 1.21439 0.78571 0.99372 0.98975 0.92625 0.89272 0.92618 0.87838 0.89341 0.88598 0.88008 0.85915 0.76455 0.87864 0.89376 0.89544 0.94128 0.94115 0.92213 0.93145 0.91293 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.89 71.98 0.71 -2.34 16 2 C -0.07 -1.58 6.13 29.84 0.18 -1.40 16 3 C 0.16 4.31 6.47 43.10 0.28 4.59 16 4 N -0.32 -8.39 12.58 -47.39 -0.60 -8.98 16 5 N -0.36 -7.67 4.01 -369.58 -1.48 -9.15 16 6 C 0.08 0.81 11.47 127.77 1.47 2.27 16 7 C 0.18 4.16 11.12 83.54 0.93 5.09 16 8 C -0.83 -23.79 6.15 21.99 0.14 -23.65 16 9 S 2.73 93.40 5.30 -56.49 -0.30 93.10 16 10 O -0.98 -35.01 15.54 -128.00 -1.99 -36.99 16 11 O -1.00 -39.71 16.53 -128.00 -2.12 -41.83 16 12 N -1.00 -34.99 3.30 -513.85 -1.69 -36.69 16 13 C 0.12 3.59 4.72 86.22 0.41 4.00 16 14 C -0.13 -4.64 6.06 30.53 0.19 -4.46 16 15 C -0.10 -4.68 4.96 30.62 0.15 -4.53 16 16 C 0.04 1.74 2.25 -11.46 -0.03 1.72 16 17 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 18 C -0.53 -28.68 8.56 25.60 0.22 -28.46 16 19 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 20 C 0.01 0.79 5.30 84.66 0.45 1.24 16 21 N -0.92 -52.67 11.32 21.45 0.24 -52.42 16 22 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.14 5.71 5.68 86.36 0.49 6.21 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.38 7.59 -2.38 -0.02 1.36 16 30 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 2.00 4.45 -2.38 -0.01 1.99 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.22 3.76 8.06 -2.91 -0.02 3.73 16 36 H 0.10 2.80 6.02 -2.39 -0.01 2.79 16 37 H 0.09 2.26 7.92 -2.39 -0.02 2.24 16 38 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 3.13 6.05 -2.39 -0.01 3.12 16 42 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.07 2.86 7.09 -2.39 -0.02 2.85 16 Total: -1.00 -73.85 360.99 0.67 -73.18 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.00 Total: 14.45 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 5.58 Total: -39.73 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -3.53 Total: -107.25 kcal Atomic # 8 Polarization: -74.72 SS G_CDS: -4.10 Total: -78.82 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 93.40 SS G_CDS: -0.30 Total: 93.10 kcal Total: -73.85 0.67 -73.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.930 kcal (2) G-P(sol) polarization free energy of solvation -73.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds