Wall clock time and date at job start Tue Mar 31 2020 15:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21298 * 120.00024 * 2 1 4 4 C 1.46831 * 120.00076 * 179.97438 * 2 1 3 5 5 C 1.40071 * 120.09616 * 180.02562 * 4 2 1 6 6 C 1.36602 * 119.89655 * 179.97438 * 5 4 2 7 7 C 1.39234 * 120.09850 * 359.97438 * 6 5 4 8 8 N 1.39237 * 119.89894 * 179.97438 * 7 6 5 9 9 C 1.34782 * 119.99855 * 35.17582 * 8 7 6 10 10 O 1.21601 * 119.99695 * 355.42847 * 9 8 7 11 11 C 1.47385 * 120.00138 * 175.42531 * 9 8 7 12 12 C 1.41305 * 126.41673 * 359.97438 * 11 9 8 13 13 N 1.30452 * 108.02485 * 180.02562 * 12 11 9 14 14 N 1.39935 * 108.89984 * 359.74365 * 13 12 11 15 15 C 1.46494 * 125.75427 * 180.27505 * 14 13 12 16 16 C 1.50705 * 109.47458 * 270.18083 * 15 14 13 17 17 H 1.08001 * 119.99117 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00145 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00060 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00005 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47153 * 59.99628 * 20 18 16 22 22 H 1.48499 * 109.47260 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47137 * 300.00086 * 20 18 16 24 24 C 1.34265 * 108.49857 * 0.42742 * 14 13 12 25 25 C 1.50694 * 126.29544 * 179.84674 * 24 14 13 26 26 C 1.39238 * 120.20339 * 0.25567 * 7 6 5 27 27 C 1.36598 * 120.09475 * 359.48407 * 26 7 6 28 28 H 1.08998 * 109.47425 * 269.99934 * 1 2 3 29 29 H 1.08997 * 109.46872 * 30.00879 * 1 2 3 30 30 H 1.09005 * 109.46648 * 150.00223 * 1 2 3 31 31 H 1.07998 * 120.05058 * 359.95613 * 5 4 2 32 32 H 1.07996 * 119.94679 * 179.97438 * 6 5 4 33 33 H 0.96997 * 120.00213 * 215.17107 * 8 7 6 34 34 H 1.08004 * 125.99060 * 359.97438 * 12 11 9 35 35 H 1.09005 * 109.46800 * 30.18238 * 15 14 13 36 36 H 1.09003 * 109.47673 * 150.17863 * 15 14 13 37 37 H 0.97006 * 119.99717 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47089 * 269.71595 * 25 24 14 39 39 H 1.09000 * 109.47586 * 29.71153 * 25 24 14 40 40 H 1.09001 * 109.47202 * 149.71553 * 25 24 14 41 41 H 1.07997 * 119.95366 * 179.72135 * 26 7 6 42 42 H 1.07997 * 120.04908 * 180.23062 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2412 -1.2716 0.0006 5 6 3.6419 -1.2739 0.0011 6 6 4.3208 -2.4593 0.0022 7 6 3.6225 -3.6639 0.0032 8 7 4.3187 -4.8697 0.0038 9 6 5.4822 -4.9758 0.6758 10 8 5.9659 -3.9974 1.2121 11 6 6.1681 -6.2775 0.7609 12 6 5.7303 -7.4951 0.1929 13 7 6.6059 -8.4160 0.4879 14 7 7.6336 -7.8392 1.2425 15 6 8.8096 -8.5401 1.7639 16 6 8.5029 -9.0845 3.1353 17 1 7.5294 -8.9240 3.5746 18 6 9.4650 -9.7873 3.8290 19 7 10.6502 -9.9832 3.2938 20 14 9.0846 -10.4627 5.5286 21 1 7.9426 -11.4080 5.4414 22 1 10.2763 -11.1741 6.0567 23 1 8.7320 -9.3433 6.4386 24 6 7.3585 -6.5359 1.4109 25 6 8.1980 -5.5373 2.1652 26 6 2.2301 -3.6664 -0.0021 27 6 1.5430 -2.4858 0.0022 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 4.1843 -0.3400 0.0004 32 1 5.4008 -2.4620 0.0022 33 1 3.9664 -5.6334 -0.4794 34 1 4.8284 -7.6384 -0.3838 35 1 9.0684 -9.3619 1.0963 36 1 9.6477 -7.8461 1.8276 37 1 11.3270 -10.4780 3.7818 38 1 7.8835 -5.5127 3.2086 39 1 9.2470 -5.8280 2.1088 40 1 8.0707 -4.5487 1.7240 41 1 1.6926 -4.6031 -0.0058 42 1 0.4631 -2.4886 0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887578375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:49 Heat of formation + Delta-G solvation = 21.367262 kcal Electronic energy + Delta-G solvation = -26011.339187 eV Core-core repulsion = 22150.891015 eV Total energy + Delta-G solvation = -3860.448171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13323 -40.42973 -39.43999 -37.87075 -34.87505 -33.96429 -32.23162 -31.94436 -31.30845 -30.86928 -29.13333 -27.39770 -26.75994 -24.30142 -23.36123 -22.87562 -22.09193 -20.34541 -19.83150 -19.26885 -17.88918 -17.25093 -16.84794 -16.71143 -15.83819 -15.37840 -15.19658 -15.11464 -14.68953 -14.56556 -14.34076 -14.23040 -14.02305 -13.63129 -13.42579 -12.97876 -12.93884 -12.67931 -12.51588 -12.46394 -12.37404 -12.20197 -11.88979 -11.57827 -11.41455 -11.20247 -10.92586 -10.48933 -10.40448 -10.32210 -10.03762 -10.01570 -9.60293 -9.23812 -8.76394 -8.72820 -8.39536 -8.03503 -6.39401 -4.47848 0.40454 1.23424 1.90217 2.24738 2.63859 2.90216 3.16049 3.20529 3.22910 3.35165 3.53291 3.76699 3.86136 4.19192 4.50232 4.66625 4.75465 4.85590 4.97214 5.05358 5.06737 5.08459 5.13825 5.28772 5.30800 5.42592 5.58608 5.61231 5.73859 5.80711 5.94266 6.02047 6.12044 6.21053 6.30828 6.37138 6.43558 6.66759 6.79378 6.82740 7.02000 7.31157 7.35393 7.47289 7.66542 7.70078 8.19991 8.28225 8.56758 9.19430 10.68735 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.002158 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.580468 B =12972.770971 C =13099.398017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.397 3.603 3 O -0.467 6.467 4 C -0.205 4.205 5 C -0.038 4.038 6 C -0.140 4.140 7 C 0.199 3.801 8 N -0.676 5.676 9 C 0.605 3.395 10 O -0.531 6.531 11 C -0.338 4.338 12 C 0.060 3.940 13 N -0.291 5.291 14 N -0.311 5.311 15 C 0.250 3.750 16 C -0.543 4.543 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.909 3.091 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.173 3.827 25 C -0.095 4.095 26 C -0.168 4.168 27 C -0.051 4.051 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.148 0.852 33 H 0.412 0.588 34 H 0.177 0.823 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.271 0.729 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.132 0.868 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.383 12.968 -8.186 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.276 3.724 3 O -0.343 6.343 4 C -0.207 4.207 5 C -0.057 4.057 6 C -0.160 4.160 7 C 0.102 3.898 8 N -0.319 5.319 9 C 0.398 3.602 10 O -0.408 6.408 11 C -0.353 4.353 12 C -0.128 4.128 13 N -0.111 5.111 14 N -0.087 5.087 15 C 0.133 3.867 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.198 1.198 24 C 0.035 3.965 25 C -0.153 4.153 26 C -0.188 4.188 27 C -0.069 4.069 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.152 0.848 32 H 0.166 0.834 33 H 0.248 0.752 34 H 0.194 0.806 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.150 0.850 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.999 12.662 -7.822 21.851 hybrid contribution -0.659 -0.377 0.779 1.087 sum -16.657 12.285 -7.044 21.863 Atomic orbital electron populations 1.22236 0.94085 1.04743 1.04698 1.22378 0.91523 0.87708 0.70744 1.90545 1.72163 1.34448 1.37179 1.20431 0.94617 0.94625 1.11041 1.21083 0.92920 0.98539 0.93109 1.21147 1.02047 0.90463 1.02338 1.18091 0.90906 0.86197 0.94607 1.43333 1.23666 1.12529 1.52411 1.17452 0.78808 0.87754 0.76200 1.90712 1.64691 1.38723 1.46663 1.19487 1.02093 0.94276 1.19456 1.23748 0.99160 0.90103 0.99775 1.77174 0.98589 1.22167 1.13155 1.49432 1.18367 1.05365 1.35558 1.19903 0.78194 0.93294 0.95283 1.21184 1.00172 1.36633 1.00090 0.91703 1.24921 0.94562 0.95240 0.98890 1.69901 1.04135 1.40017 1.38518 0.86367 0.78004 0.79293 0.82795 1.19883 1.20823 1.19821 1.21505 0.94115 0.86742 0.94140 1.20607 0.98220 0.96572 0.99915 1.20666 0.92169 0.99192 1.06812 1.20954 0.99838 0.90943 0.95207 0.88538 0.89592 0.89559 0.84833 0.83426 0.75163 0.80596 0.92377 0.92423 0.91980 0.89608 0.90619 0.88775 0.85003 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.09 9.75 36.01 0.35 -0.74 16 2 C 0.40 3.84 7.22 -30.83 -0.22 3.62 16 3 O -0.47 -6.21 17.08 5.54 0.09 -6.11 16 4 C -0.21 -2.04 5.87 -105.05 -0.62 -2.65 16 5 C -0.04 -0.43 9.55 -39.49 -0.38 -0.81 16 6 C -0.14 -1.73 8.62 -39.80 -0.34 -2.07 16 7 C 0.20 2.22 6.29 -83.76 -0.53 1.69 16 8 N -0.68 -7.60 5.29 -10.83 -0.06 -7.66 16 9 C 0.61 9.12 7.65 -12.54 -0.10 9.03 16 10 O -0.53 -9.16 12.24 5.28 0.06 -9.09 16 11 C -0.34 -5.66 6.13 -105.07 -0.64 -6.30 16 12 C 0.06 0.94 11.51 -16.97 -0.20 0.75 16 13 N -0.29 -5.90 12.50 30.87 0.39 -5.52 16 14 N -0.31 -6.68 3.56 -57.77 -0.21 -6.89 16 15 C 0.25 6.01 5.97 -5.19 -0.03 5.98 16 16 C -0.54 -14.22 9.39 -34.44 -0.32 -14.54 16 17 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -24.06 13.29 55.43 0.74 -23.33 16 20 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C 0.17 3.31 7.01 -81.59 -0.57 2.73 16 25 C -0.10 -1.62 9.57 36.00 0.34 -1.27 16 26 C -0.17 -1.43 9.90 -39.80 -0.39 -1.83 16 27 C -0.05 -0.39 9.31 -39.49 -0.37 -0.76 16 28 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.29 6.46 -51.93 -0.34 -0.05 16 31 H 0.13 1.52 7.64 -52.49 -0.40 1.12 16 32 H 0.15 2.04 6.20 -52.49 -0.33 1.71 16 33 H 0.41 3.35 7.78 -40.82 -0.32 3.03 16 34 H 0.18 1.87 7.51 -52.48 -0.39 1.47 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.06 1.37 7.01 -51.93 -0.36 1.01 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.08 1.26 7.04 -51.93 -0.37 0.90 16 40 H 0.09 1.50 6.50 -51.93 -0.34 1.17 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 0.59 6.34 -52.49 -0.33 0.26 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -31.95 363.24 -7.47 -39.42 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.83 Total: 3.79 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -4.11 Total: -5.49 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.86 Total: -43.39 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.16 Total: -15.20 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.95 -7.47 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887578375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.790 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds