Wall clock time and date at job start Tue Mar 31 2020 15:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21298 * 120.00024 * 2 1 4 4 C 1.46831 * 120.00076 * 179.97438 * 2 1 3 5 5 C 1.40071 * 120.09616 * 180.02562 * 4 2 1 6 6 C 1.36602 * 119.89655 * 179.97438 * 5 4 2 7 7 C 1.39234 * 120.09850 * 359.97438 * 6 5 4 8 8 N 1.39237 * 119.89894 * 179.97438 * 7 6 5 9 9 C 1.34782 * 119.99855 * 35.17582 * 8 7 6 10 10 O 1.21601 * 119.99695 * 355.42847 * 9 8 7 11 11 C 1.47385 * 120.00138 * 175.42531 * 9 8 7 12 12 C 1.41305 * 126.41673 * 359.97438 * 11 9 8 13 13 N 1.30452 * 108.02485 * 180.02562 * 12 11 9 14 14 N 1.39935 * 108.89984 * 359.74365 * 13 12 11 15 15 C 1.46494 * 125.75427 * 180.27505 * 14 13 12 16 16 C 1.50705 * 109.47458 * 270.18083 * 15 14 13 17 17 H 1.08001 * 119.99117 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00145 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00060 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00005 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47153 * 59.99628 * 20 18 16 22 22 H 1.48499 * 109.47260 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47137 * 300.00086 * 20 18 16 24 24 C 1.34265 * 108.49857 * 0.42742 * 14 13 12 25 25 C 1.50694 * 126.29544 * 179.84674 * 24 14 13 26 26 C 1.39238 * 120.20339 * 0.25567 * 7 6 5 27 27 C 1.36598 * 120.09475 * 359.48407 * 26 7 6 28 28 H 1.08998 * 109.47425 * 269.99934 * 1 2 3 29 29 H 1.08997 * 109.46872 * 30.00879 * 1 2 3 30 30 H 1.09005 * 109.46648 * 150.00223 * 1 2 3 31 31 H 1.07998 * 120.05058 * 359.95613 * 5 4 2 32 32 H 1.07996 * 119.94679 * 179.97438 * 6 5 4 33 33 H 0.96997 * 120.00213 * 215.17107 * 8 7 6 34 34 H 1.08004 * 125.99060 * 359.97438 * 12 11 9 35 35 H 1.09005 * 109.46800 * 30.18238 * 15 14 13 36 36 H 1.09003 * 109.47673 * 150.17863 * 15 14 13 37 37 H 0.97006 * 119.99717 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.47089 * 269.71595 * 25 24 14 39 39 H 1.09000 * 109.47586 * 29.71153 * 25 24 14 40 40 H 1.09001 * 109.47202 * 149.71553 * 25 24 14 41 41 H 1.07997 * 119.95366 * 179.72135 * 26 7 6 42 42 H 1.07997 * 120.04908 * 180.23062 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2412 -1.2716 0.0006 5 6 3.6419 -1.2739 0.0011 6 6 4.3208 -2.4593 0.0022 7 6 3.6225 -3.6639 0.0032 8 7 4.3187 -4.8697 0.0038 9 6 5.4822 -4.9758 0.6758 10 8 5.9659 -3.9974 1.2121 11 6 6.1681 -6.2775 0.7609 12 6 5.7303 -7.4951 0.1929 13 7 6.6059 -8.4160 0.4879 14 7 7.6336 -7.8392 1.2425 15 6 8.8096 -8.5401 1.7639 16 6 8.5029 -9.0845 3.1353 17 1 7.5294 -8.9240 3.5746 18 6 9.4650 -9.7873 3.8290 19 7 10.6502 -9.9832 3.2938 20 14 9.0846 -10.4627 5.5286 21 1 7.9426 -11.4080 5.4414 22 1 10.2763 -11.1741 6.0567 23 1 8.7320 -9.3433 6.4386 24 6 7.3585 -6.5359 1.4109 25 6 8.1980 -5.5373 2.1652 26 6 2.2301 -3.6664 -0.0021 27 6 1.5430 -2.4858 0.0022 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 4.1843 -0.3400 0.0004 32 1 5.4008 -2.4620 0.0022 33 1 3.9664 -5.6334 -0.4794 34 1 4.8284 -7.6384 -0.3838 35 1 9.0684 -9.3619 1.0963 36 1 9.6477 -7.8461 1.8276 37 1 11.3270 -10.4780 3.7818 38 1 7.8835 -5.5127 3.2086 39 1 9.2470 -5.8280 2.1088 40 1 8.0707 -4.5487 1.7240 41 1 1.6926 -4.6031 -0.0058 42 1 0.4631 -2.4886 0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887578375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:48 Heat of formation + Delta-G solvation = 1.422852 kcal Electronic energy + Delta-G solvation = -26012.204041 eV Core-core repulsion = 22150.891015 eV Total energy + Delta-G solvation = -3861.313026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.45841 -41.41455 -40.39999 -38.82502 -35.97619 -35.72585 -33.86996 -32.95065 -32.51080 -31.70077 -30.00553 -28.94706 -28.17223 -25.63573 -24.79367 -23.68095 -23.25197 -21.47290 -20.74493 -20.64570 -18.92538 -18.86503 -18.33731 -17.55315 -16.97978 -16.66533 -16.45331 -16.08911 -15.94258 -15.79601 -15.59607 -15.20051 -14.93053 -14.83442 -14.47436 -14.29309 -14.12830 -13.75985 -13.73985 -13.64403 -13.55365 -13.12309 -13.03210 -12.96509 -12.90997 -12.70139 -12.31615 -12.17835 -11.89806 -11.77463 -11.37515 -10.95322 -10.76911 -10.65025 -10.30879 -10.02699 -9.64336 -9.11943 -8.38957 -6.55379 -0.40663 0.48088 0.59379 1.24097 1.37643 1.38356 1.45154 1.48668 1.59661 2.13578 2.31672 2.40719 2.88375 2.93480 3.21058 3.64640 3.68972 3.84516 3.97372 4.02852 4.17750 4.23215 4.35062 4.41094 4.50171 4.57944 4.59285 4.71505 4.75596 4.76411 4.87290 4.98279 5.05808 5.13349 5.16480 5.26368 5.32750 5.41026 5.47455 5.53012 5.63313 5.73173 5.96399 5.99526 6.41827 6.52930 6.60810 6.80266 7.14929 7.15979 8.68629 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.002158 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.580468 B =12972.770971 C =13099.398017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.395 3.605 3 O -0.515 6.515 4 C -0.213 4.213 5 C -0.057 4.057 6 C -0.158 4.158 7 C 0.180 3.820 8 N -0.656 5.656 9 C 0.607 3.393 10 O -0.558 6.558 11 C -0.332 4.332 12 C 0.084 3.916 13 N -0.334 5.334 14 N -0.336 5.336 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.053 0.947 18 C 0.024 3.976 19 N -0.916 5.916 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.274 1.274 23 H -0.267 1.267 24 C 0.151 3.849 25 C -0.089 4.089 26 C -0.154 4.154 27 C -0.035 4.035 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.429 0.571 34 H 0.233 0.767 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.274 0.726 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.169 0.831 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.558 12.609 -8.318 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.278 3.722 3 O -0.396 6.396 4 C -0.215 4.215 5 C -0.076 4.076 6 C -0.179 4.179 7 C 0.084 3.916 8 N -0.301 5.301 9 C 0.399 3.601 10 O -0.437 6.437 11 C -0.347 4.347 12 C -0.103 4.103 13 N -0.153 5.153 14 N -0.113 5.113 15 C 0.148 3.852 16 C -0.594 4.594 17 H 0.071 0.929 18 C -0.178 4.178 19 N -0.554 5.554 20 Si 0.794 3.206 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.192 1.192 24 C 0.015 3.985 25 C -0.147 4.147 26 C -0.174 4.174 27 C -0.053 4.053 28 H 0.133 0.867 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.269 0.731 34 H 0.249 0.751 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.187 0.813 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -20.219 12.302 -7.987 24.979 hybrid contribution 0.510 -0.141 0.720 0.894 sum -19.710 12.160 -7.267 24.272 Atomic orbital electron populations 1.22280 0.90073 1.06437 1.06249 1.23078 0.93638 0.86696 0.68833 1.90538 1.73519 1.35912 1.39584 1.20707 0.93888 0.96214 1.10645 1.21059 0.94298 0.97762 0.94520 1.20992 1.01094 0.91748 1.04049 1.18266 0.92176 0.85238 0.95944 1.43008 1.22263 1.13360 1.51463 1.17242 0.79741 0.86592 0.76535 1.90716 1.65698 1.39258 1.47992 1.19724 1.01210 0.95489 1.18301 1.24604 0.99349 0.88438 0.97900 1.77127 0.99491 1.24040 1.14662 1.49123 1.18660 1.06053 1.37456 1.19388 0.79427 0.92450 0.93982 1.21353 0.99730 1.37096 1.01202 0.92899 1.25727 0.94334 0.95328 1.02421 1.69989 1.04890 1.40563 1.39949 0.85413 0.77988 0.78699 0.78481 1.19715 1.19887 1.19215 1.21961 0.95472 0.86206 0.94896 1.20575 0.97810 0.96603 0.99679 1.21066 0.90685 1.01102 1.04555 1.21434 1.01963 0.89311 0.92569 0.86735 0.89385 0.86441 0.86358 0.85963 0.73080 0.75059 0.94906 0.93148 0.91663 0.89829 0.90999 0.87958 0.81327 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 9.75 71.24 0.69 -0.66 16 2 C 0.39 6.99 7.22 27.94 0.20 7.19 16 3 O -0.52 -13.88 17.08 -3.09 -0.05 -13.94 16 4 C -0.21 -3.81 5.87 -20.14 -0.12 -3.93 16 5 C -0.06 -1.36 9.55 22.33 0.21 -1.14 16 6 C -0.16 -3.97 8.62 22.13 0.19 -3.78 16 7 C 0.18 3.61 6.29 38.45 0.24 3.85 16 8 N -0.66 -13.04 5.29 -306.43 -1.62 -14.66 16 9 C 0.61 17.65 7.65 86.65 0.66 18.31 16 10 O -0.56 -19.44 12.24 -4.03 -0.05 -19.49 16 11 C -0.33 -10.80 6.13 -20.15 -0.12 -10.92 16 12 C 0.08 2.49 11.51 85.65 0.99 3.47 16 13 N -0.33 -13.45 12.50 -56.26 -0.70 -14.15 16 14 N -0.34 -14.85 3.56 -336.67 -1.20 -16.05 16 15 C 0.27 13.38 5.97 85.64 0.51 13.89 16 16 C -0.56 -29.94 9.39 25.60 0.24 -29.70 16 17 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 18 C 0.02 1.25 5.46 84.65 0.46 1.71 16 19 N -0.92 -50.60 13.29 21.44 0.28 -50.31 16 20 Si 0.97 41.96 29.54 68.60 2.03 43.98 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.15 5.88 7.01 42.15 0.30 6.17 16 25 C -0.09 -3.14 9.57 71.23 0.68 -2.46 16 26 C -0.15 -1.91 9.90 22.13 0.22 -1.69 16 27 C -0.03 -0.37 9.31 22.33 0.21 -0.16 16 28 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.12 0.08 6.46 -2.38 -0.02 0.06 16 31 H 0.12 3.00 7.64 -2.91 -0.02 2.98 16 32 H 0.12 3.62 6.20 -2.91 -0.02 3.60 16 33 H 0.43 5.18 7.78 -92.71 -0.72 4.46 16 34 H 0.23 3.81 7.51 -2.91 -0.02 3.79 16 35 H 0.03 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.05 2.55 7.01 -2.39 -0.02 2.53 16 37 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 38 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.07 2.54 7.04 -2.39 -0.02 2.52 16 40 H 0.10 3.40 6.50 -2.39 -0.02 3.38 16 41 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.18 0.29 6.34 -2.91 -0.02 0.27 16 Total: -1.00 -74.59 363.24 4.61 -69.98 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.36 Total: 14.48 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.57 Total: 0.16 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -3.24 Total: -95.17 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.10 Total: -33.43 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -74.59 4.61 -69.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887578375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.399 kcal (2) G-P(sol) polarization free energy of solvation -74.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds