Wall clock time and date at job start Tue Mar 31 2020 15:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21250 * 119.99624 * 2 1 4 4 C 1.47182 * 119.99892 * 179.97438 * 2 1 3 5 5 C 1.39890 * 120.14246 * 359.97438 * 4 2 1 6 6 C 1.37907 * 119.97124 * 180.02562 * 5 4 2 7 7 C 1.38293 * 120.25181 * 359.73667 * 6 5 4 8 8 C 1.38998 * 120.28250 * 0.51987 * 7 6 5 9 9 N 1.39902 * 119.99098 * 179.75990 * 8 7 6 10 10 C 1.34770 * 119.99933 * 146.33774 * 9 8 7 11 11 O 1.21621 * 120.00311 * 354.72190 * 10 9 8 12 12 C 1.47412 * 120.00283 * 174.72028 * 10 9 8 13 13 C 1.41296 * 126.41221 * 0.04648 * 12 10 9 14 14 N 1.30446 * 108.02302 * 179.68024 * 13 12 10 15 15 N 1.39932 * 108.89922 * 0.44313 * 14 13 12 16 16 C 1.46504 * 125.75061 * 179.81455 * 15 14 13 17 17 C 1.50699 * 109.46509 * 269.68757 * 16 15 14 18 18 H 1.08001 * 120.00631 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99510 * 179.72714 * 17 16 15 20 20 N 1.31513 * 120.00165 * 0.27776 * 19 17 16 21 21 Si 1.86804 * 119.99973 * 180.27485 * 19 17 16 22 22 H 1.48505 * 109.46785 * 89.99898 * 21 19 17 23 23 H 1.48495 * 109.47240 * 209.99857 * 21 19 17 24 24 H 1.48499 * 109.47056 * 330.00261 * 21 19 17 25 25 C 1.34260 * 108.49505 * 359.54465 * 15 14 13 26 26 C 1.50698 * 126.29655 * 180.28664 * 25 15 14 27 27 C 1.38581 * 120.02014 * 359.48578 * 8 7 6 28 28 H 1.09003 * 109.47096 * 269.99488 * 1 2 3 29 29 H 1.08999 * 109.47540 * 30.00087 * 1 2 3 30 30 H 1.09001 * 109.46855 * 149.99918 * 1 2 3 31 31 H 1.07999 * 120.01137 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.87077 * 180.02562 * 6 5 4 33 33 H 1.08010 * 119.85694 * 180.27949 * 7 6 5 34 34 H 0.96998 * 119.99856 * 326.33925 * 9 8 7 35 35 H 1.08006 * 125.98955 * 359.96197 * 13 12 10 36 36 H 1.09003 * 109.46958 * 149.69237 * 16 15 14 37 37 H 1.08994 * 109.47220 * 29.68748 * 16 15 14 38 38 H 0.97004 * 119.99940 * 180.02562 * 20 19 17 39 39 H 1.08994 * 109.47423 * 90.00204 * 26 25 15 40 40 H 1.09003 * 109.47298 * 210.00394 * 26 25 15 41 41 H 1.08997 * 109.47228 * 329.99760 * 26 25 15 42 42 H 1.07999 * 120.12469 * 180.23501 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5464 -2.4879 0.0017 6 6 2.2395 -3.6801 0.0027 7 6 3.6224 -3.6821 -0.0028 8 6 4.3251 -2.4828 0.0015 9 7 5.7241 -2.4919 0.0010 10 6 6.4040 -1.5225 -0.6426 11 8 5.8050 -0.6950 -1.3025 12 6 7.8739 -1.4650 -0.5466 13 6 8.7025 -2.3518 0.1769 14 7 9.9401 -1.9749 0.0098 15 7 9.9616 -0.8397 -0.8081 16 6 11.1606 -0.1101 -1.2284 17 6 11.4649 0.9746 -0.2276 18 1 10.8288 1.1077 0.6350 19 6 12.5586 1.7941 -0.4105 20 7 13.3330 1.6326 -1.4612 21 14 12.9405 3.1338 0.8340 22 1 13.8356 2.5906 1.8871 23 1 13.6122 4.2679 0.1501 24 1 11.6772 3.6078 1.4543 25 6 8.6988 -0.5353 -1.1476 26 6 8.2621 0.6102 -2.0240 27 6 3.6403 -1.2780 0.0005 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 0.4665 -2.4907 0.0025 32 1 1.7002 -4.6158 0.0031 33 1 4.1588 -4.6196 -0.0065 34 1 6.2046 -3.1960 0.4638 35 1 8.3699 -3.1966 0.7618 36 1 10.9893 0.3367 -2.2078 37 1 12.0035 -0.7987 -1.2856 38 1 14.1027 2.2089 -1.5896 39 1 8.2337 0.2824 -3.0631 40 1 7.2691 0.9419 -1.7204 41 1 8.9674 1.4349 -1.9222 42 1 4.1846 -0.3452 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887610326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:54 Heat of formation + Delta-G solvation = 21.384462 kcal Electronic energy + Delta-G solvation = -26349.846711 eV Core-core repulsion = 22489.399286 eV Total energy + Delta-G solvation = -3860.447426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04643 -40.35676 -39.25728 -37.85764 -34.81144 -33.92369 -32.18545 -31.80117 -31.34934 -30.51588 -29.18864 -27.31035 -26.67743 -24.06840 -23.78208 -23.02973 -21.80243 -20.26710 -19.81485 -19.05496 -17.69975 -17.17043 -16.79616 -16.34520 -15.83158 -15.46647 -15.24131 -15.12641 -14.97109 -14.53998 -14.34033 -14.20166 -13.90061 -13.66704 -13.26399 -12.90823 -12.70391 -12.60596 -12.51561 -12.35803 -12.11887 -12.08143 -11.84223 -11.67031 -11.51036 -11.14875 -10.91634 -10.49848 -10.39136 -10.25290 -9.97536 -9.92515 -9.56030 -9.14918 -8.73601 -8.66493 -8.34653 -7.97986 -6.36269 -4.44542 0.46596 1.13950 2.02091 2.27318 2.69809 2.96460 3.17509 3.24005 3.27797 3.40691 3.54352 3.81599 3.88599 4.22630 4.58389 4.71587 4.81515 4.90608 4.92015 5.01058 5.08216 5.13086 5.15418 5.28600 5.35678 5.42918 5.62927 5.69387 5.71175 5.83368 6.05307 6.06657 6.13372 6.16878 6.30315 6.47613 6.52247 6.71566 6.82339 6.86028 7.07670 7.36673 7.45763 7.52172 7.71678 7.73877 8.27338 8.37346 8.61024 9.22854 10.71893 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.002613 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.003451 B =10711.378479 C =11700.571514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.391 3.609 3 O -0.450 6.450 4 C -0.154 4.154 5 C -0.099 4.099 6 C -0.113 4.113 7 C -0.122 4.122 8 C 0.152 3.848 9 N -0.678 5.678 10 C 0.603 3.397 11 O -0.531 6.531 12 C -0.336 4.336 13 C 0.059 3.941 14 N -0.293 5.293 15 N -0.312 5.312 16 C 0.250 3.750 17 C -0.542 4.542 18 H 0.066 0.934 19 C 0.068 3.932 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.173 3.827 26 C -0.100 4.100 27 C -0.065 4.065 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.410 0.590 35 H 0.177 0.823 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.270 0.730 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.258 -11.135 2.336 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.269 3.731 3 O -0.325 6.325 4 C -0.156 4.156 5 C -0.118 4.118 6 C -0.132 4.132 7 C -0.143 4.143 8 C 0.057 3.943 9 N -0.323 5.323 10 C 0.395 3.605 11 O -0.408 6.408 12 C -0.352 4.352 13 C -0.128 4.128 14 N -0.112 5.112 15 N -0.088 5.088 16 C 0.133 3.867 17 C -0.581 4.581 18 H 0.084 0.916 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.195 1.195 25 C 0.035 3.965 26 C -0.158 4.158 27 C -0.085 4.085 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.247 0.753 35 H 0.194 0.806 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.676 -10.049 2.006 23.976 hybrid contribution -0.149 0.196 0.743 0.783 sum -21.825 -9.853 2.750 24.103 Atomic orbital electron populations 1.22225 0.93759 1.04885 1.04668 1.22514 0.91594 0.87685 0.71347 1.90585 1.72079 1.34256 1.35554 1.20402 0.93936 0.94938 1.06333 1.21367 0.99962 0.91412 0.99091 1.20871 0.93395 0.98157 1.00735 1.21169 0.94680 0.96731 1.01688 1.17662 0.83254 0.93631 0.99751 1.43382 1.03800 1.30192 1.54884 1.17465 0.86220 0.79618 0.77159 1.90751 1.70070 1.39364 1.40652 1.19515 0.92247 1.06123 1.17272 1.23732 0.90528 0.99295 0.99271 1.77152 1.20306 1.01196 1.12556 1.49421 1.06993 1.19435 1.32994 1.19892 0.79048 0.91119 0.96600 1.21249 1.12499 1.15230 1.09089 0.91607 1.24925 0.95187 0.97600 0.95891 1.69911 1.16105 1.39204 1.27391 0.86317 0.78810 0.80608 0.80788 1.20226 1.20742 1.19525 1.21494 0.84955 0.95297 0.94744 1.20652 1.03551 0.94259 0.97376 1.21534 0.93083 0.98699 0.95215 0.88517 0.89437 0.89519 0.85076 0.85137 0.85211 0.75332 0.80638 0.92458 0.92395 0.92058 0.90316 0.88529 0.89679 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 9.75 36.01 0.35 -0.92 16 2 C 0.39 4.46 7.23 -30.68 -0.22 4.23 16 3 O -0.45 -7.12 17.09 5.58 0.10 -7.03 16 4 C -0.15 -1.75 5.87 -105.09 -0.62 -2.36 16 5 C -0.10 -0.78 9.36 -39.08 -0.37 -1.15 16 6 C -0.11 -0.83 10.02 -39.68 -0.40 -1.23 16 7 C -0.12 -1.08 9.95 -39.28 -0.39 -1.47 16 8 C 0.15 1.84 6.27 -83.77 -0.53 1.31 16 9 N -0.68 -8.39 5.33 -10.87 -0.06 -8.44 16 10 C 0.60 9.90 7.55 -12.53 -0.09 9.80 16 11 O -0.53 -10.10 12.52 5.26 0.07 -10.03 16 12 C -0.34 -6.00 6.13 -105.07 -0.64 -6.64 16 13 C 0.06 0.99 11.51 -16.98 -0.20 0.79 16 14 N -0.29 -6.14 12.50 30.86 0.39 -5.76 16 15 N -0.31 -6.96 3.56 -57.77 -0.21 -7.16 16 16 C 0.25 6.18 5.78 -5.19 -0.03 6.15 16 17 C -0.54 -14.54 9.39 -34.44 -0.32 -14.87 16 18 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 20 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 21 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.17 3.48 7.01 -81.60 -0.57 2.91 16 26 C -0.10 -1.82 9.34 36.00 0.34 -1.48 16 27 C -0.06 -0.91 8.20 -38.89 -0.32 -1.22 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.35 6.47 -51.93 -0.34 0.02 16 31 H 0.13 0.60 6.35 -52.49 -0.33 0.27 16 32 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 34 H 0.41 3.73 7.79 -40.82 -0.32 3.42 16 35 H 0.18 2.01 7.51 -52.48 -0.39 1.62 16 36 H 0.06 1.40 7.62 -51.93 -0.40 1.01 16 37 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.10 1.74 6.50 -51.93 -0.34 1.40 16 41 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 42 H 0.15 2.54 6.00 -52.49 -0.32 2.22 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -33.48 364.70 -7.52 -41.00 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.91 Total: 4.29 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -4.11 Total: -4.43 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.86 Total: -45.12 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.16 Total: -17.06 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.48 -7.52 -41.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887610326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.384 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds