Wall clock time and date at job start Tue Mar 31 2020 15:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21250 * 119.99624 * 2 1 4 4 C 1.47182 * 119.99892 * 179.97438 * 2 1 3 5 5 C 1.39890 * 120.14246 * 359.97438 * 4 2 1 6 6 C 1.37907 * 119.97124 * 180.02562 * 5 4 2 7 7 C 1.38293 * 120.25181 * 359.73667 * 6 5 4 8 8 C 1.38998 * 120.28250 * 0.51987 * 7 6 5 9 9 N 1.39902 * 119.99098 * 179.75990 * 8 7 6 10 10 C 1.34770 * 119.99933 * 146.33774 * 9 8 7 11 11 O 1.21621 * 120.00311 * 354.72190 * 10 9 8 12 12 C 1.47412 * 120.00283 * 174.72028 * 10 9 8 13 13 C 1.41296 * 126.41221 * 0.04648 * 12 10 9 14 14 N 1.30446 * 108.02302 * 179.68024 * 13 12 10 15 15 N 1.39932 * 108.89922 * 0.44313 * 14 13 12 16 16 C 1.46504 * 125.75061 * 179.81455 * 15 14 13 17 17 C 1.50699 * 109.46509 * 269.68757 * 16 15 14 18 18 H 1.08001 * 120.00631 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99510 * 179.72714 * 17 16 15 20 20 N 1.31513 * 120.00165 * 0.27776 * 19 17 16 21 21 Si 1.86804 * 119.99973 * 180.27485 * 19 17 16 22 22 H 1.48505 * 109.46785 * 89.99898 * 21 19 17 23 23 H 1.48495 * 109.47240 * 209.99857 * 21 19 17 24 24 H 1.48499 * 109.47056 * 330.00261 * 21 19 17 25 25 C 1.34260 * 108.49505 * 359.54465 * 15 14 13 26 26 C 1.50698 * 126.29655 * 180.28664 * 25 15 14 27 27 C 1.38581 * 120.02014 * 359.48578 * 8 7 6 28 28 H 1.09003 * 109.47096 * 269.99488 * 1 2 3 29 29 H 1.08999 * 109.47540 * 30.00087 * 1 2 3 30 30 H 1.09001 * 109.46855 * 149.99918 * 1 2 3 31 31 H 1.07999 * 120.01137 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.87077 * 180.02562 * 6 5 4 33 33 H 1.08010 * 119.85694 * 180.27949 * 7 6 5 34 34 H 0.96998 * 119.99856 * 326.33925 * 9 8 7 35 35 H 1.08006 * 125.98955 * 359.96197 * 13 12 10 36 36 H 1.09003 * 109.46958 * 149.69237 * 16 15 14 37 37 H 1.08994 * 109.47220 * 29.68748 * 16 15 14 38 38 H 0.97004 * 119.99940 * 180.02562 * 20 19 17 39 39 H 1.08994 * 109.47423 * 90.00204 * 26 25 15 40 40 H 1.09003 * 109.47298 * 210.00394 * 26 25 15 41 41 H 1.08997 * 109.47228 * 329.99760 * 26 25 15 42 42 H 1.07999 * 120.12469 * 180.23501 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5464 -2.4879 0.0017 6 6 2.2395 -3.6801 0.0027 7 6 3.6224 -3.6821 -0.0028 8 6 4.3251 -2.4828 0.0015 9 7 5.7241 -2.4919 0.0010 10 6 6.4040 -1.5225 -0.6426 11 8 5.8050 -0.6950 -1.3025 12 6 7.8739 -1.4650 -0.5466 13 6 8.7025 -2.3518 0.1769 14 7 9.9401 -1.9749 0.0098 15 7 9.9616 -0.8397 -0.8081 16 6 11.1606 -0.1101 -1.2284 17 6 11.4649 0.9746 -0.2276 18 1 10.8288 1.1077 0.6350 19 6 12.5586 1.7941 -0.4105 20 7 13.3330 1.6326 -1.4612 21 14 12.9405 3.1338 0.8340 22 1 13.8356 2.5906 1.8871 23 1 13.6122 4.2679 0.1501 24 1 11.6772 3.6078 1.4543 25 6 8.6988 -0.5353 -1.1476 26 6 8.2621 0.6102 -2.0240 27 6 3.6403 -1.2780 0.0005 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 0.4665 -2.4907 0.0025 32 1 1.7002 -4.6158 0.0031 33 1 4.1588 -4.6196 -0.0065 34 1 6.2046 -3.1960 0.4638 35 1 8.3699 -3.1966 0.7618 36 1 10.9893 0.3367 -2.2078 37 1 12.0035 -0.7987 -1.2856 38 1 14.1027 2.2089 -1.5896 39 1 8.2337 0.2824 -3.0631 40 1 7.2691 0.9419 -1.7204 41 1 8.9674 1.4349 -1.9222 42 1 4.1846 -0.3452 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887610326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:53 Heat of formation + Delta-G solvation = -0.773558 kcal Electronic energy + Delta-G solvation = -26350.807555 eV Core-core repulsion = 22489.399286 eV Total energy + Delta-G solvation = -3861.408269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46890 -41.37934 -40.33486 -38.84509 -35.98164 -35.74098 -33.89391 -32.90792 -32.56928 -31.41092 -30.07215 -28.98019 -28.17512 -25.51899 -24.81760 -24.31293 -22.92892 -21.41964 -20.94776 -20.45966 -18.91420 -18.73589 -18.29732 -17.17314 -16.99621 -16.71335 -16.36040 -16.25846 -16.22797 -16.00168 -15.60898 -15.49703 -14.90227 -14.83613 -14.49829 -14.32210 -14.16863 -13.71671 -13.69953 -13.60946 -13.22828 -13.14366 -13.03625 -13.00799 -12.75108 -12.71567 -12.44791 -12.33813 -11.89794 -11.79688 -11.46020 -10.87528 -10.79569 -10.77672 -10.32823 -9.93758 -9.66547 -9.09888 -8.41523 -6.58024 -0.32070 0.25877 0.67153 1.24507 1.34640 1.35609 1.45611 1.46381 1.57428 2.14488 2.29714 2.39145 2.89766 2.90664 3.11470 3.65344 3.66664 3.93775 4.00106 4.09058 4.13139 4.17029 4.30655 4.41114 4.49597 4.53178 4.57763 4.68419 4.72912 4.74513 4.85155 4.95266 5.02574 5.08168 5.14342 5.33723 5.37783 5.41880 5.45160 5.52361 5.60771 5.70783 5.96582 6.00427 6.43381 6.50595 6.57035 6.77018 7.13235 7.17325 8.66413 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.002613 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.003451 B =10711.378479 C =11700.571514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.385 3.615 3 O -0.515 6.515 4 C -0.178 4.178 5 C -0.077 4.077 6 C -0.105 4.105 7 C -0.107 4.107 8 C 0.124 3.876 9 N -0.659 5.659 10 C 0.603 3.397 11 O -0.564 6.564 12 C -0.333 4.333 13 C 0.084 3.916 14 N -0.332 5.332 15 N -0.336 5.336 16 C 0.267 3.733 17 C -0.558 4.558 18 H 0.050 0.950 19 C 0.025 3.975 20 N -0.915 5.915 21 Si 0.970 3.030 22 H -0.271 1.271 23 H -0.270 1.270 24 H -0.272 1.272 25 C 0.150 3.850 26 C -0.092 4.092 27 C -0.101 4.101 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.427 0.573 35 H 0.233 0.767 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.275 0.725 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.582 -14.200 3.512 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.267 3.733 3 O -0.395 6.395 4 C -0.179 4.179 5 C -0.096 4.096 6 C -0.123 4.123 7 C -0.127 4.127 8 C 0.030 3.970 9 N -0.305 5.305 10 C 0.394 3.606 11 O -0.444 6.444 12 C -0.348 4.348 13 C -0.103 4.103 14 N -0.151 5.151 15 N -0.113 5.113 16 C 0.149 3.851 17 C -0.596 4.596 18 H 0.069 0.931 19 C -0.176 4.176 20 N -0.553 5.553 21 Si 0.794 3.206 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.197 1.197 25 C 0.014 3.986 26 C -0.150 4.150 27 C -0.122 4.122 28 H 0.138 0.862 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.192 0.808 32 H 0.194 0.806 33 H 0.180 0.820 34 H 0.266 0.734 35 H 0.249 0.751 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.041 -13.175 3.201 28.476 hybrid contribution 0.671 0.988 0.397 1.258 sum -24.370 -12.188 3.598 27.484 Atomic orbital electron populations 1.22268 0.89363 1.06451 1.06499 1.23428 0.94021 0.86898 0.68934 1.90565 1.73726 1.36237 1.38926 1.20620 0.93064 0.96612 1.07632 1.21866 1.02029 0.89905 0.95777 1.21462 0.92839 0.99674 0.98298 1.21582 0.95653 0.96294 0.99184 1.17861 0.82710 0.94384 1.02090 1.43063 1.04349 1.29257 1.53816 1.17303 0.85606 0.80212 0.77448 1.90747 1.70436 1.40860 1.42310 1.19774 0.93148 1.05480 1.16399 1.24571 0.88717 0.99442 0.97586 1.77102 1.22693 1.01527 1.13804 1.49134 1.06738 1.20601 1.34839 1.19390 0.79574 0.90256 0.95921 1.21392 1.12733 1.16355 1.09141 0.93135 1.25714 0.94834 0.99508 0.97587 1.69988 1.16502 1.40118 1.28671 0.85366 0.78479 0.78155 0.78601 1.19591 1.19494 1.19686 1.21923 0.84804 0.96390 0.95484 1.20585 1.02742 0.93537 0.98126 1.21360 0.94686 0.97749 0.98358 0.86201 0.89625 0.86178 0.80779 0.80625 0.82021 0.73361 0.75120 0.93183 0.94702 0.91577 0.88818 0.88805 0.91020 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 9.75 71.24 0.69 -1.23 16 2 C 0.39 8.83 7.23 28.04 0.20 9.03 16 3 O -0.52 -17.76 17.09 -2.94 -0.05 -17.81 16 4 C -0.18 -3.86 5.87 -20.17 -0.12 -3.98 16 5 C -0.08 -0.87 9.36 22.59 0.21 -0.66 16 6 C -0.10 -0.94 10.02 22.20 0.22 -0.72 16 7 C -0.11 -1.43 9.95 22.47 0.22 -1.21 16 8 C 0.12 2.83 6.27 38.12 0.24 3.07 16 9 N -0.66 -15.58 5.33 -306.56 -1.63 -17.21 16 10 C 0.60 20.15 7.55 86.66 0.65 20.80 16 11 O -0.56 -22.70 12.52 -4.10 -0.05 -22.76 16 12 C -0.33 -12.00 6.13 -20.15 -0.12 -12.12 16 13 C 0.08 2.71 11.51 85.65 0.99 3.70 16 14 N -0.33 -14.12 12.50 -56.27 -0.70 -14.82 16 15 N -0.34 -15.67 3.56 -336.69 -1.20 -16.87 16 16 C 0.27 13.93 5.78 85.63 0.50 14.43 16 17 C -0.56 -31.21 9.39 25.60 0.24 -30.97 16 18 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 19 C 0.03 1.38 5.46 84.66 0.46 1.84 16 20 N -0.92 -51.62 13.29 21.45 0.28 -51.34 16 21 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 C 0.15 6.32 7.01 42.14 0.30 6.62 16 26 C -0.09 -3.56 9.34 71.24 0.67 -2.90 16 27 C -0.10 -2.92 8.20 22.72 0.19 -2.73 16 28 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.12 0.39 6.47 -2.39 -0.02 0.38 16 31 H 0.17 0.42 6.35 -2.91 -0.02 0.40 16 32 H 0.18 0.15 8.06 -2.91 -0.02 0.12 16 33 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 34 H 0.43 6.61 7.79 -92.71 -0.72 5.89 16 35 H 0.23 4.45 7.51 -2.91 -0.02 4.43 16 36 H 0.05 2.62 7.62 -2.39 -0.02 2.60 16 37 H 0.03 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.09 3.66 6.50 -2.39 -0.02 3.65 16 41 H 0.07 2.92 7.70 -2.39 -0.02 2.90 16 42 H 0.10 3.83 6.00 -2.91 -0.02 3.81 16 Total: -1.00 -81.61 364.70 4.57 -77.04 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.36 Total: 15.36 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.54 Total: 2.97 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -3.25 Total: -100.24 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.10 Total: -40.56 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -81.61 4.57 -77.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887610326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.268 kcal (2) G-P(sol) polarization free energy of solvation -81.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds